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Thermococcus barophilus MP superfamily assignments

Taxonomy
Taxonomy browser entry

Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus barophilus; Thermococcus barophilus MP

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 2265 total
1464 (65 %) with assignment
279 average length
62 % amino acid coverage
Domains: 1964 total
517 unique superfamilies
375 unique families
266 average length
3.8 average superfamily size
74 % formed by duplication
Domain combinations: 270 domain pairs
705 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

171 157 47 9 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
82 78 21 5 SCOP 46785 "Winged helix" DNA-binding domain
43 41 13 5 SCOP 51735 NAD(P)-binding Rossmann-fold domains
43 42 10 13 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
31 29 20 4 SCOP 50249 Nucleic acid-binding proteins
29 29 5 0 SCOP 102114 Radical SAM enzymes
25 24 8 0 SCOP 54862 4Fe-4S ferredoxins
25 25 4 1 SCOP 88723 PIN domain-like
24 21 5 1 SCOP 161098 MetI-like
21 21 2 0 SCOP 103473 MFS general substrate transporter
21 21 2 4 SCOP 53383 PLP-dependent transferases
21 20 8 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
20 20 5 4 SCOP 56784 HAD-like
20 20 4 1 SCOP 81301 Nucleotidyltransferase
19 19 6 1 SCOP 53448 Nucleotide-diphospho-sugar transferases
19 19 3 1 SCOP 47240 Ferritin-like
17 16 10 5 SCOP 54211 Ribosomal protein S5 domain 2-like
17 17 2 3 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
17 17 5 3 SCOP 56281 Metallo-hydrolase/oxidoreductase
17 17 10 4 SCOP 88697 PUA domain-like
16 14 7 1 SCOP 51905 FAD/NAD(P)-binding domain
16 14 4 0 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
16 14 5 1 SCOP 53850 Periplasmic binding protein-like II
15 14 6 3 SCOP 56300 Metallo-dependent phosphatases
15 15 11 4 SCOP 55681 Class II aaRS and biotin synthetases
15 8 3 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
14 14 9 3 SCOP 52374 Nucleotidylyl transferase
14 14 2 1 SCOP 54909 Dimeric alpha+beta barrel
12 11 4 0 SCOP 48452 TPR-like
11 11 8 5 SCOP 50447 Translation proteins
11 9 7 1 SCOP 54631 CBS-domain pair
11 4 2 0 SCOP 53738 Phosphoglucomutase, first 3 domains
10 10 6 2 SCOP 52317 Class I glutamine amidotransferase-like
10 10 4 4 SCOP 53613 Ribokinase-like
10 10 5 2 SCOP 52980 Restriction endonuclease-like
10 10 6 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
10 5 1 1 SCOP 52210 Succinyl-CoA synthetase domains
9 8 4 2 SCOP 52833 Thioredoxin-like
9 9 4 1 SCOP 53187 Zn-dependent exopeptidases
9 9 4 3 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
9 9 7 3 SCOP 88713 Glycoside hydrolase/deacetylase
8 8 3 4 SCOP 51556 Metallo-dependent hydrolases
8 8 2 3 SCOP 51569 Aldolase
8 7 3 4 SCOP 100950 NagB/RpiA/CoA transferase-like
8 8 2 3 SCOP 51182 RmlC-like cupins
8 8 8 0 SCOP 47413 lambda repressor-like DNA-binding domains
8 8 3 0 SCOP 52922 TK C-terminal domain-like
8 8 1 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
7 7 4 2 SCOP 56059 Glutathione synthetase ATP-binding domain-like
7 7 4 1 SCOP 53271 PRTase-like
7 7 2 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
7 7 1 0 SCOP 53649 Alkaline phosphatase-like
7 5 5 0 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
7 6 6 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
7 6 5 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
7 6 6 0 SCOP 55608 Homing endonucleases
7 6 6 0 SCOP 51294 Hedgehog/intein (Hint) domain
7 6 2 1 SCOP 56042 PurM C-terminal domain-like
7 6 2 1 SCOP 55326 PurM N-terminal domain-like
6 6 3 1 SCOP 53474 alpha/beta-Hydrolases
6 6 1 0 SCOP 57829 Zn-binding ribosomal proteins
6 6 4 2 SCOP 50104 Translation proteins SH3-like domain
6 5 3 1 SCOP 53067 Actin-like ATPase domain
6 6 4 4 SCOP 75217 alpha/beta knot
6 6 2 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
6 6 2 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
6 6 1 0 SCOP 56770 HydA/Nqo6-like
6 6 2 0 SCOP 55469 FMN-dependent nitroreductase-like
6 6 3 0 SCOP 47598 Ribbon-helix-helix
6 6 2 1 SCOP 56762 HydB/Nqo4-like
6 5 2 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
6 6 2 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
6 6 1 0 SCOP 50331 MOP-like
6 3 1 1 SCOP 47954 Cyclin-like
5 5 4 1 SCOP 56112 Protein kinase-like (PK-like)
5 5 2 2 SCOP 51366 Ribulose-phoshate binding barrel
5 5 4 0 SCOP 64182 DHH phosphoesterases
5 5 3 1 SCOP 109755 PhoU-like
5 5 1 0 SCOP 54285 MoaD/ThiS
5 4 3 1 SCOP 52096 ClpP/crotonase
5 5 2 1 SCOP 109604 HD-domain/PDEase-like
5 1 1 0 SCOP 51126 Pectin lyase-like
5 5 5 1 SCOP 52954 Class II aaRS ABD-related
5 4 2 0 SCOP 57783 Zinc beta-ribbon
5 3 2 0 SCOP 53807 "Helical backbone" metal receptor
5 5 3 0 SCOP 50692 ADC-like
5 5 4 1 SCOP 143437 THUMP domain-like
5 5 3 0 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
5 5 2 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
5 2 2 0 SCOP 49344 CBD9-like
5 5 2 0 SCOP 63380 Riboflavin synthase domain-like
4 4 1 1 SCOP 53167 Purine and uridine phosphorylases
4 3 2 0 SCOP 54197 HIT-like
4 4 3 1 SCOP 53137 Translational machinery components
4 4 4 2 SCOP 55120 Pseudouridine synthase
4 4 2 1 SCOP 52218 Flavoproteins
4 4 1 0 SCOP 51658 Xylose isomerase-like
4 4 1 0 SCOP 50129 GroES-like
4 4 2 2 SCOP 53633 Carbamate kinase-like
4 4 2 1 SCOP 51161 Trimeric LpxA-like enzymes
4 4 4 2 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
4 4 3 1 SCOP 55315 L30e-like
4 4 3 2 SCOP 51445 (Trans)glycosidases
4 4 4 1 SCOP 74650 Galactose mutarotase-like
4 4 2 1 SCOP 48208 Six-hairpin glycosidases
4 3 3 0 SCOP 55008 HMA, heavy metal-associated domain
4 4 1 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
4 4 2 0 SCOP 143243 Nqo5-like
4 4 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
4 4 3 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
4 4 1 0 SCOP 141694 AF2212/PG0164-like
4 4 2 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
4 4 3 0 SCOP 101386 all-alpha NTP pyrophosphatases
4 2 1 0 SCOP 53901 Thiolase-like
4 4 2 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
4 4 2 0 SCOP 53146 Nitrogenase accessory factor-like
4 4 4 1 SCOP 55186 ThrRS/AlaRS common domain
4 3 2 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
4 3 3 0 SCOP 54980 EF-G C-terminal domain-like
4 3 3 0 SCOP 51971 Nucleotide-binding domain
4 4 2 2 SCOP 52440 PreATP-grasp domain
4 2 1 1 SCOP 53681 Aspartate/glutamate racemase
4 4 3 1 SCOP 116726 TrkA C-terminal domain-like
4 4 1 1 SCOP 48310 Aldehyde ferredoxin oxidoreductase, C-terminal domains
4 2 1 1 SCOP 55945 TATA-box binding protein-like
4 4 1 1 SCOP 55031 Bacterial exopeptidase dimerisation domain
4 4 4 1 SCOP 88688 Families 57/38 glycoside transferase middle domain
4 4 1 1 SCOP 56228 Aldehyde ferredoxin oxidoreductase, N-terminal domain
4 4 2 1 SCOP 159071 TrmB C-terminal domain-like
3 3 3 2 SCOP 52141 Uracil-DNA glycosylase-like
3 3 1 2 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
3 3 1 2 SCOP 55282 RL5-like
3 3 2 1 SCOP 55920 Creatinase/aminopeptidase
3 3 3 2 SCOP 53098 Ribonuclease H-like
3 3 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
3 3 2 1 SCOP 48150 DNA-glycosylase
3 2 2 2 SCOP 55205 EPT/RTPC-like
3 3 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
3 3 1 1 SCOP 51395 FMN-linked oxidoreductases
3 3 3 0 SCOP 46689 Homeodomain-like
3 3 1 2 SCOP 56796 Dehydroquinate synthase-like
3 3 1 0 SCOP 47113 Histone-fold
3 3 2 1 SCOP 50182 Sm-like ribonucleoproteins
3 3 2 0 SCOP 50475 FMN-binding split barrel
3 2 2 0 SCOP 81296 E set domains
3 3 2 0 SCOP 54001 Cysteine proteinases
3 3 3 1 SCOP 53639 AraD/HMP-PK domain-like
3 3 1 2 SCOP 52768 Arginase/deacetylase
3 3 3 1 SCOP 51230 Single hybrid motif
3 3 3 1 SCOP 56349 DNA breaking-rejoining enzymes
3 3 2 1 SCOP 89550 PHP domain-like
3 3 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
3 3 1 1 SCOP 54913 GlnB-like
3 3 2 0 SCOP 53822 Periplasmic binding protein-like I
3 3 2 1 SCOP 55021 ACT-like
3 3 1 1 SCOP 161070 SNF-like
3 3 2 1 SCOP 56024 Phospholipase D/nuclease
3 3 2 0 SCOP 103247 TT1751-like
3 3 3 0 SCOP 46548 alpha-helical ferredoxin
3 3 2 1 SCOP 52490 Tubulin nucleotide-binding domain-like
3 3 2 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
3 3 2 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
3 3 1 3 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
3 3 3 0 SCOP 81665 Calcium ATPase, transmembrane domain M
3 3 2 1 SCOP 55307 Tubulin C-terminal domain-like
3 3 1 1 SCOP 55060 GHMP Kinase, C-terminal domain
3 3 2 0 SCOP 141322 NfeD domain-like
3 1 1 0 SCOP 49299 PKD domain
3 3 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
3 3 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
3 3 3 0 SCOP 81653 Calcium ATPase, transduction domain A
3 3 2 0 SCOP 54585 Cdc48 domain 2-like
3 3 1 1 SCOP 101821 Aminopeptidase/glucanase lid domain
2 2 2 2 SCOP 53697 SIS domain
2 2 2 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
2 2 2 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
2 2 2 0 SCOP 46946 S13-like H2TH domain
2 2 2 0 SCOP 110324 Ribosomal L27 protein-like
2 2 1 1 SCOP 51695 PLC-like phosphodiesterases
2 2 2 0 SCOP 55174 Alpha-L RNA-binding motif
2 2 2 0 SCOP 82649 SufE/NifU
2 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
2 2 1 0 SCOP 82784 OsmC-like
2 2 2 1 SCOP 55821 YrdC/RibB
2 2 2 1 SCOP 51713 tRNA-guanine transglycosylase
2 2 2 0 SCOP 54292 2Fe-2S ferredoxin-like
2 2 1 1 SCOP 56276 S-adenosylmethionine decarboxylase
2 2 2 0 SCOP 64307 SirA-like
2 2 1 0 SCOP 48371 ARM repeat
2 2 1 0 SCOP 89957 MTH1187/YkoF-like
2 2 2 0 SCOP 63829 Calcium-dependent phosphotriesterase
2 2 1 0 SCOP 56801 Acetyl-CoA synthetase-like
2 1 1 1 SCOP 56672 DNA/RNA polymerases
2 2 2 1 SCOP 50891 Cyclophilin-like
2 2 2 1 SCOP 54534 FKBP-like
2 2 1 0 SCOP 46579 Prefoldin
2 2 1 1 SCOP 111278 SSo0622-like
2 2 1 1 SCOP 63393 RNA polymerase subunits
2 2 1 0 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
2 1 1 0 SCOP 57997 Tropomyosin
2 2 1 1 SCOP 56317 Carbon-nitrogen hydrolase
2 2 2 0 SCOP 51306 LexA/Signal peptidase
2 2 1 2 SCOP 52972 ITPase-like
2 2 1 1 SCOP 110849 ParB/Sulfiredoxin
2 2 2 0 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
2 2 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 2 1 0 SCOP 101960 Stabilizer of iron transporter SufD
2 2 1 0 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
2 2 2 2 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 2 1 SCOP 51717 Dihydropteroate synthetase-like
2 2 1 0 SCOP 102712 JAB1/MPN domain
2 1 1 0 SCOP 46955 Putative DNA-binding domain
2 2 1 1 SCOP 118196 YaeB-like
2 2 1 0 SCOP 143100 TTHA1013/TTHA0281-like
2 2 2 0 SCOP 75712 Rad50 coiled-coil Zn hook
2 2 2 0 SCOP 53300 vWA-like
2 2 1 1 SCOP 55154 CYTH-like phosphatases
2 2 1 1 SCOP 102215 Creatininase
2 2 2 2 SCOP 52467 DHS-like NAD/FAD-binding domain
2 1 1 1 SCOP 116734 DNA methylase specificity domain
2 2 2 1 SCOP 54975 Acylphosphatase/BLUF domain-like
2 2 2 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
2 2 2 0 SCOP 159234 FomD-like
2 2 1 2 SCOP 56821 Prismane protein-like
2 2 2 0 SCOP 57802 Rubredoxin-like
2 2 2 0 SCOP 50037 C-terminal domain of transcriptional repressors
2 2 1 0 SCOP 159659 Cgl1923-like
2 2 2 1 SCOP 141130 Acetamidase/Formamidase-like
2 2 2 0 SCOP 117070 LEA14-like
2 2 1 0 SCOP 53163 HybD-like
2 2 1 1 SCOP 51604 Enolase C-terminal domain-like
2 2 1 0 SCOP 75005 Arabinanase/levansucrase/invertase
2 2 1 0 SCOP 82171 DPP6 N-terminal domain-like
2 2 2 0 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
2 2 1 0 SCOP 50346 PRC-barrel domain
2 2 1 1 SCOP 63867 MoeA C-terminal domain-like
2 2 1 1 SCOP 53092 Creatinase/prolidase N-terminal domain
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 1 1 SCOP 48592 GroEL equatorial domain-like
2 1 1 1 SCOP 55979 DNA clamp
2 2 2 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
2 2 1 0 SCOP 51246 Rudiment single hybrid motif
2 2 2 0 SCOP 69318 Integrin alpha N-terminal domain
2 2 1 0 SCOP 49464 Carboxypeptidase regulatory domain-like
2 2 2 0 SCOP 51011 Glycosyl hydrolase domain
2 1 1 0 SCOP 161093 MgtE membrane domain-like
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 1 1 SCOP 54826 Enolase N-terminal domain-like
2 2 1 1 SCOP 52029 GroEL apical domain-like
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 1 1 SCOP 63882 MoeA N-terminal region -like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 1 SCOP 158702 Sec63 N-terminal domain-like
2 2 1 0 SCOP 117892 Band 7/SPFH domain
2 2 1 0 SCOP 53743 FucI/AraA N-terminal and middle domains
2 2 1 1 SCOP 111057 Hypothetical protein PF0899
2 2 2 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 81271 TGS-like
2 2 2 2 SCOP 55261 GAD domain-like
2 2 1 1 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 1 SCOP 54849 GroEL-intermediate domain like
2 2 2 1 SCOP 88802 Pre-PUA domain
1 1 1 0 SCOP 56731 DNA primase core
1 1 1 0 SCOP 48013 NusB-like
1 1 1 0 SCOP 53927 Cytidine deaminase-like
1 1 1 1 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 143597 YojJ-like
1 1 1 0 SCOP 81606 PP2C-like
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 89447 AbrB/MazE/MraZ-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 48557 L-aspartase-like
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 53720 ALDH-like
1 1 1 0 SCOP 51283 dUTPase-like
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 0 SCOP 55811 Nudix
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
1 1 1 1 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 53254 Phosphoglycerate mutase-like
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 1 SCOP 48576 Terpenoid synthases
1 1 1 1 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 49764 HSP20-like chaperones
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 0 SCOP 52042 Ribosomal protein L32e
1 1 1 1 SCOP 52949 Macro domain-like
1 1 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
1 1 1 0 SCOP 50978 WD40 repeat-like
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 0 SCOP 54427 NTF2-like
1 1 1 1 SCOP 52499 Isochorismatase-like hydrolases
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 55144 LigT-like
1 1 1 1 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 49777 PEBP-like
1 1 1 0 SCOP 103486 V-type ATP synthase subunit C
1 1 1 1 SCOP 143870 PF0523-like
1 1 1 1 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
1 1 1 0 SCOP 55856 Cytochrome b5-like heme/steroid binding domain
1 1 1 1 SCOP 56529 FAH
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 1 SCOP 56399 ADP-ribosylation
1 1 1 0 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 101478 ADP-ribosylglycohydrolase
1 1 1 1 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 1 SCOP 102405 MCP/YpsA-like
1 1 1 0 SCOP 81324 Voltage-gated potassium channels
1 1 1 1 SCOP 53795 PEP carboxykinase-like
1 1 1 0 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 1 SCOP 52016 LeuD/IlvD-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
1 1 1 0 SCOP 82697 PurS-like
1 1 1 1 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 1 SCOP 101744 Rof/RNase P subunit-like
1 1 1 1 SCOP 89733 L-sulfolactate dehydrogenase-like
1 1 1 0 SCOP 50118 Cell growth inhibitor/plasmid maintenance toxic component
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 117782 YbjQ-like
1 1 1 1 SCOP 110857 Gamma-glutamyl cyclotransferase-like
1 1 1 1 SCOP 81340 Clc chloride channel
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 117856 AF0104/ALDC/Ptd012-like
1 1 1 0 SCOP 54786 YcfA/nrd intein domain
1 1 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 50993 Peptidase/esterase 'gauge' domain
1 1 1 0 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 1 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
1 1 1 0 SCOP 117396 TM1631-like
1 1 1 1 SCOP 82544 GckA/TtuD-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 144052 Thermophilic metalloprotease-like
1 1 1 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
1 1 1 0 SCOP 89028 Cobalamin adenosyltransferase-like
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 1 SCOP 118215 Proton glutamate symport protein
1 1 1 0 SCOP 102588 LmbE-like
1 1 1 1 SCOP 103025 Folate-binding domain
1 1 1 1 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 55785 PYP-like sensor domain (PAS domain)
1 1 1 1 SCOP 143430 TTP0101/SSO1404-like
1 1 1 0 SCOP 140683 SP0561-like
1 1 1 0 SCOP 69322 Tricorn protease domain 2
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 1 SCOP 53182 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 1 1 SCOP 52242 Cobalamin (vitamin B12)-binding domain
1 1 1 1 SCOP 51703 Cobalamin (vitamin B12)-dependent enzymes
1 1 1 1 SCOP 51219 TRAP-like
1 1 1 0 SCOP 53041 Resolvase-like
1 1 1 0 SCOP 75011 3-carboxy-cis,cis-mucoante lactonizing enzyme
1 1 1 0 SCOP 69786 YggU-like
1 1 1 1 SCOP 64076 MTH938-like
1 1 1 1 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 47781 RuvA domain 2-like
1 1 1 1 SCOP 56271 Pyruvoyl-dependent histidine and arginine decarboxylases
1 1 1 0 SCOP 49452 Starch-binding domain-like
1 1 1 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 102198 Putative cyclase
1 1 1 1 SCOP 63992 Dipeptide transport protein
1 1 1 1 SCOP 82704 AlbA-like
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 0 SCOP 74784 Translin
1 1 1 1 SCOP 89124 Nop domain
1 1 1 1 SCOP 111321 AF1104-like
1 1 1 1 SCOP 142535 AF0625-like
1 1 1 1 SCOP 111249 Sulfolobus fructose-1,6-bisphosphatase-like
1 1 1 0 SCOP 158436 Ta0600-like
1 1 1 1 SCOP 160975 AF1531-like
1 1 1 1 SCOP 160350 Rnp2-like
1 1 1 1 SCOP 49367 Superoxide reductase-like
1 1 1 0 SCOP 54984 eEF-1beta-like
1 1 1 0 SCOP 57667 beta-beta-alpha zinc fingers
1 1 1 1 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 158372 AF1782-like
1 1 1 0 SCOP 69695 SRP19
1 1 1 1 SCOP 160363 MTH889-like
1 1 1 1 SCOP 103165 Ta1353-like
1 1 1 0 SCOP 52743 Subtilisin-like
1 1 1 0 SCOP 90123 ABC transporter transmembrane region
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 1 SCOP 143865 CorA soluble domain-like
1 1 1 0 SCOP 50156 PDZ domain-like
1 1 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 159713 Dhaf3308-like
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 1 SCOP 142913 YktB/PF0168-like
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 1 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 160945 PH0156-like
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 68923 PEP carboxykinase N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 81853 Family 10 polysaccharide lyase
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 1 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 143968 UbiD C-terminal domain-like
1 1 1 0 SCOP 81585 PsbU/PolX domain-like
1 1 1 0 SCOP 89915 DNA-binding protein Tfx
1 1 1 0 SCOP 160148 CPE0013-like
1 1 1 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 160964 MalF N-terminal region-like
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 0 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
1 1 1 1 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
1 1 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
1 1 1 0 SCOP 101852 Bacterial fluorinating enzyme, C-terminal domain
1 1 1 1 SCOP 159902 PH1570-like
1 1 1 1 SCOP 159612 TBP-interacting protein-like
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 1 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 102522 Bacterial fluorinating enzyme, N-terminal domain
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 1 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 0 SCOP 52025 PA domain
1 1 1 0 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 1 SCOP 51649 RuBisCo, C-terminal domain
1 1 1 1 SCOP 54966 RuBisCO, large subunit, small (N-terminal) domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 0 SCOP 75553 Smc hinge domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 1 SCOP 89000 post-HMGL domain-like
1 1 1 1 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 1 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 1 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 1 SCOP 101790 Aminomethyltransferase beta-barrel domain
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 160467 PH0987 N-terminal domain-like
1 1 1 1 SCOP 54893 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 1 1 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 141300 GatD N-terminal domain-like
1 1 1 0 SCOP 140914 PriB N-terminal domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 55267 tRNA-intron endonuclease N-terminal domain-like
1 1 1 0 SCOP 52913 RNA 3'-terminal phosphate cyclase, RPTC, insert domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Troponin coil-coiled subunits
SCOP superfamily Dodecin-like
SCOP superfamily GIY-YIG endonuclease
SCOP superfamily Probable GTPase Der, C-terminal domain
SCOP superfamily DAK1/DegV-like
SCOP superfamily Helical scaffold and wing domains of SecA
SCOP superfamily BEACH domain
SCOP superfamily beta-catenin-interacting protein ICAT
SCOP superfamily N-terminal domain of MutM-like DNA repair proteins
SCOP superfamily Cytochrome c oxidase subunit I-like
SCOP superfamily Transmembrane di-heme cytochromes
SCOP superfamily Gated mechanosensitive channel
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily Putative transcriptional regulator TM1602, C-terminal domain
SCOP superfamily Plakin repeat
SCOP superfamily Cullin repeat-like
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily Ribosome binding protein Y (YfiA homologue)
SCOP superfamily Type III secretory system chaperone-like
SCOP superfamily Recombination endonuclease VII, C-terminal and dimerization domains
SCOP superfamily Telomeric repeat binding factor (TRF) dimerisation domain
SCOP superfamily LuxS/MPP-like metallohydrolase
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily Bacterial hemolysins
SCOP superfamily Delta-sleep-inducing peptide immunoreactive peptide
SCOP superfamily XRCC4, C-terminal oligomerization domain
SCOP superfamily FYVE/PHD zinc finger
SCOP superfamily ArfGap/RecO-like zinc finger
SCOP superfamily RING/U-box
SCOP superfamily OMPA-like
SCOP superfamily Colicin
SCOP superfamily Type II DNA topoisomerase
SCOP superfamily PheT/TilS domain
SCOP superfamily S-adenosylmethionine synthetase
SCOP superfamily Bet v1-like
SCOP superfamily PR-1-like
SCOP superfamily Type II 3-dehydroquinate dehydratase
SCOP superfamily alpha-D-mannose-specific plant lectins
SCOP superfamily PH domain-like
SCOP superfamily Acid proteases
SCOP superfamily STI-like
SCOP superfamily Concanavalin A-like lectins/glucanases
SCOP superfamily Galactose-binding domain-like
SCOP superfamily Neurophysin II
SCOP superfamily TRAF domain-like
SCOP superfamily C2 domain (Calcium/lipid-binding domain, CaLB)
SCOP superfamily Carbohydrate-binding domain
SCOP superfamily Clathrin adaptor appendage domain
SCOP superfamily Multiheme cytochromes
SCOP superfamily Protein prenylyltransferase
SCOP superfamily t-snare proteins
SCOP superfamily Domain of poly(ADP-ribose) polymerase
SCOP superfamily HLH, helix-loop-helix DNA-binding domain
SCOP superfamily Spectrin repeat
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily CHY zinc finger-like
SCOP superfamily YfgJ-like
SCOP superfamily ATP synthase B chain-like
SCOP superfamily NMB0513-like
SCOP superfamily Bacterial polysaccharide co-polymerase-like
SCOP superfamily YcgL-like
SCOP superfamily WSSV envelope protein-like
SCOP superfamily TerB-like
SCOP superfamily YheA/YmcA-like
SCOP superfamily GINS helical bundle-like
SCOP superfamily HIT/MYND zinc finger-like
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily Rhomboid-like
SCOP superfamily CofE-like
SCOP superfamily MAL13P1.257-like
SCOP superfamily Atu1913-like
SCOP superfamily YfmB-like
SCOP superfamily YppE-like
SCOP superfamily Endosomal sorting complex assembly domain
SCOP superfamily HSP33 redox switch-like
SCOP superfamily YehU-like
SCOP superfamily CRISPR-associated protein
SCOP superfamily Nucleoporin domain
SCOP superfamily Hypothetical protein MPN330
SCOP superfamily EspA/CesA-like
SCOP superfamily Coronavirus S2 glycoprotein
SCOP superfamily QueA-like
SCOP superfamily Recombination protein RecR
SCOP superfamily Rbstp2229 protein
SCOP superfamily Hypothetical protein MTH677
SCOP superfamily ThiG-like
SCOP superfamily Oligoxyloglucan reducing end-specific cellobiohydrolase
SCOP superfamily Triger factor/SurA peptide-binding domain-like
SCOP superfamily VPS9 domain
SCOP superfamily DEK C-terminal domain
SCOP superfamily KorB DNA-binding domain-like
SCOP superfamily BAR/IMD domain-like
SCOP superfamily TSP type-3 repeat
SCOP superfamily Holliday junction resolvase RusA
SCOP superfamily Coproporphyrinogen III oxidase
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily GRIP domain
SCOP superfamily Flavivirus capsid protein C
SCOP superfamily Heat shock protein 70kD (HSP70), C-terminal subdomain

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