SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Helicobacter hepaticus ATCC 51449 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter hepaticus; Helicobacter hepaticus ATCC 51449

Downloads
Fasta format sequences
Domain assignments


Jump to [ Top of page · Domain assignments ]

Assignment statistics

Sequences: 1876 total
1170 (62 %) with assignment
298 average length
60 % amino acid coverage
Domains: 1656 total
562 unique superfamilies
339 unique families
286 average length
2.9 average superfamily size
66 % formed by duplication
Domain combinations: 300 domain pairs
719 unique architectures

Jump to [ Top of page · Assignment statistics ]

Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

118 107 47 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
45 45 16 5 SCOP 51735 NAD(P)-binding Rossmann-fold domains
38 37 10 3 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
23 17 14 2 SCOP 50249 Nucleic acid-binding proteins
20 20 2 3 SCOP 53383 PLP-dependent transferases
19 18 6 4 SCOP 53448 Nucleotide-diphospho-sugar transferases
18 15 12 5 SCOP 54211 Ribosomal protein S5 domain 2-like
16 9 7 4 SCOP 53067 Actin-like ATPase domain
16 16 9 0 SCOP 46785 "Winged helix" DNA-binding domain
15 15 11 3 SCOP 52374 Nucleotidylyl transferase
15 15 3 3 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
14 14 2 3 SCOP 102114 Radical SAM enzymes
14 13 6 0 SCOP 48403 Ankyrin repeat
13 13 4 1 SCOP 53850 Periplasmic binding protein-like II
12 12 9 1 SCOP 55681 Class II aaRS and biotin synthetases
12 10 10 0 SCOP 55021 ACT-like
11 10 7 1 SCOP 56059 Glutathione synthetase ATP-binding domain-like
11 10 6 2 SCOP 52317 Class I glutamine amidotransferase-like
11 11 4 0 SCOP 54862 4Fe-4S ferredoxins
11 11 7 0 SCOP 52172 CheY-like
10 10 3 1 SCOP 161098 MetI-like
10 10 3 1 SCOP 52833 Thioredoxin-like
10 7 5 4 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
10 10 4 4 SCOP 51161 Trimeric LpxA-like enzymes
10 7 6 0 SCOP 48452 TPR-like
10 7 5 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
10 7 4 1 SCOP 46626 Cytochrome c
10 10 3 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
9 9 5 7 SCOP 51569 Aldolase
9 9 3 1 SCOP 51905 FAD/NAD(P)-binding domain
9 9 4 0 SCOP 103473 MFS general substrate transporter
9 6 5 1 SCOP 81901 HCP-like
9 6 4 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
9 9 2 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
9 3 3 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
8 7 2 4 SCOP 51366 Ribulose-phoshate binding barrel
8 8 5 1 SCOP 53098 Ribonuclease H-like
8 8 4 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
8 8 3 1 SCOP 53649 Alkaline phosphatase-like
8 7 7 2 SCOP 50447 Translation proteins
8 8 6 3 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
8 6 2 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
7 7 4 1 SCOP 56784 HAD-like
7 7 4 3 SCOP 55120 Pseudouridine synthase
7 7 4 0 SCOP 51261 Duplicated hybrid motif
7 7 3 1 SCOP 64518 Phase 1 flagellin
7 6 5 2 SCOP 109604 HD-domain/PDEase-like
7 7 2 0 SCOP 56925 OMPA-like
7 6 4 1 SCOP 52440 PreATP-grasp domain
6 6 1 0 SCOP 53474 alpha/beta-Hydrolases
6 6 3 2 SCOP 53271 PRTase-like
6 6 3 0 SCOP 56300 Metallo-dependent phosphatases
6 6 4 1 SCOP 55174 Alpha-L RNA-binding motif
6 6 4 1 SCOP 56935 Porins
6 6 4 1 SCOP 51419 PLP-binding barrel
6 5 3 1 SCOP 50475 FMN-binding split barrel
6 6 5 1 SCOP 53955 Lysozyme-like
6 4 4 1 SCOP 56024 Phospholipase D/nuclease
6 6 2 1 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 3 3 1 SCOP 54980 EF-G C-terminal domain-like
6 5 4 0 SCOP 82185 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
6 5 2 1 SCOP 56042 PurM C-terminal domain-like
6 5 2 1 SCOP 55326 PurM N-terminal domain-like
6 2 1 1 SCOP 53738 Phosphoglucomutase, first 3 domains
6 3 3 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
5 5 3 3 SCOP 51556 Metallo-dependent hydrolases
5 5 4 1 SCOP 50104 Translation proteins SH3-like domain
5 5 2 2 SCOP 47240 Ferritin-like
5 5 2 5 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
5 5 3 1 SCOP 75217 alpha/beta knot
5 5 3 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
5 5 2 3 SCOP 52096 ClpP/crotonase
5 5 4 2 SCOP 53187 Zn-dependent exopeptidases
5 5 4 1 SCOP 50341 CheW-like
5 4 4 1 SCOP 116734 DNA methylase specificity domain
5 3 2 1 SCOP 63411 LuxS/MPP-like metallohydrolase
5 5 5 1 SCOP 46548 alpha-helical ferredoxin
5 5 3 1 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
5 4 3 0 SCOP 50156 PDZ domain-like
5 5 4 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
5 5 3 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
5 5 3 1 SCOP 50621 Alanine racemase C-terminal domain-like
5 5 3 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
4 4 2 3 SCOP 53697 SIS domain
4 4 1 1 SCOP 52218 Flavoproteins
4 4 4 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
4 4 2 2 SCOP 53633 Carbamate kinase-like
4 4 3 4 SCOP 48150 DNA-glycosylase
4 4 3 3 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
4 4 1 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
4 4 2 0 SCOP 117143 Flagellar hook protein flgE
4 4 2 1 SCOP 51430 NAD(P)-linked oxidoreductase
4 4 2 1 SCOP 56801 Acetyl-CoA synthetase-like
4 4 4 1 SCOP 53328 Formyltransferase
4 4 4 1 SCOP 54534 FKBP-like
4 4 2 0 SCOP 56317 Carbon-nitrogen hydrolase
4 4 2 1 SCOP 51182 RmlC-like cupins
4 4 3 0 SCOP 55008 HMA, heavy metal-associated domain
4 4 3 1 SCOP 81342 Transmembrane di-heme cytochromes
4 4 3 1 SCOP 54631 CBS-domain pair
4 4 4 0 SCOP 56601 beta-lactamase/transpeptidase-like
4 4 2 0 SCOP 46955 Putative DNA-binding domain
4 4 4 0 SCOP 47413 lambda repressor-like DNA-binding domains
4 2 2 0 SCOP 57783 Zinc beta-ribbon
4 4 4 3 SCOP 81301 Nucleotidyltransferase
4 4 3 2 SCOP 50692 ADC-like
4 4 2 1 SCOP 56954 Outer membrane efflux proteins (OEP)
4 4 2 1 SCOP 111369 HlyD-like secretion proteins
4 3 2 1 SCOP 51338 Composite domain of metallo-dependent hydrolases
4 2 2 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
4 3 3 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 4 2 1 SCOP 48695 Multiheme cytochromes
4 4 4 0 SCOP 56176 FAD-binding/transporter-associated domain-like
4 4 1 3 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
4 4 3 0 SCOP 52922 TK C-terminal domain-like
4 2 1 1 SCOP 53681 Aspartate/glutamate racemase
4 2 2 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
3 3 3 1 SCOP 53927 Cytidine deaminase-like
3 3 1 1 SCOP 52141 Uracil-DNA glycosylase-like
3 3 2 0 SCOP 100950 NagB/RpiA/CoA transferase-like
3 3 1 1 SCOP 52980 Restriction endonuclease-like
3 3 2 0 SCOP 51730 FAD-linked oxidoreductase
3 3 1 1 SCOP 48557 L-aspartase-like
3 3 3 1 SCOP 55821 YrdC/RibB
3 3 2 2 SCOP 53720 ALDH-like
3 3 2 2 SCOP 56770 HydA/Nqo6-like
3 3 3 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
3 3 1 1 SCOP 56655 Carbohydrate phosphatase
3 3 3 0 SCOP 46689 Homeodomain-like
3 3 3 2 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
3 2 2 2 SCOP 51726 UROD/MetE-like
3 3 2 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
3 3 3 0 SCOP 88723 PIN domain-like
3 3 1 0 SCOP 88713 Glycoside hydrolase/deacetylase
3 3 3 0 SCOP 52954 Class II aaRS ABD-related
3 3 2 0 SCOP 69118 AhpD-like
3 3 3 1 SCOP 52016 LeuD/IlvD-like
3 3 3 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
3 3 1 0 SCOP 51206 cAMP-binding domain-like
3 3 1 0 SCOP 109854 DinB/YfiT-like putative metalloenzymes
3 3 3 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
3 3 3 0 SCOP 88697 PUA domain-like
3 3 1 0 SCOP 103088 OmpA-like
3 3 1 1 SCOP 161070 SNF-like
3 3 3 0 SCOP 101801 Surface presentation of antigens (SPOA)
3 3 2 0 SCOP 101874 YceI-like
3 2 2 2 SCOP 53901 Thiolase-like
3 3 3 0 SCOP 47781 RuvA domain 2-like
3 3 3 0 SCOP 103039 CheC-like
3 3 1 0 SCOP 74653 TolA/TonB C-terminal domain
3 3 3 0 SCOP 69349 Phage fibre proteins
3 3 3 0 SCOP 46565 Chaperone J-domain
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 0 SCOP 55979 DNA clamp
3 3 1 1 SCOP 51246 Rudiment single hybrid motif
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 2 0 SCOP 81665 Calcium ATPase, transmembrane domain M
3 3 3 0 SCOP 110997 Sporulation related repeat
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
3 3 2 0 SCOP 81653 Calcium ATPase, transduction domain A
2 2 1 1 SCOP 53167 Purine and uridine phosphorylases
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 0 SCOP 53613 Ribokinase-like
2 2 1 0 SCOP 54197 HIT-like
2 2 2 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 2 1 SCOP 64182 DHH phosphoesterases
2 2 2 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 1 0 SCOP 47336 ACP-like
2 2 2 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
2 2 2 1 SCOP 50129 GroES-like
2 1 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 1 SCOP 54292 2Fe-2S ferredoxin-like
2 2 1 0 SCOP 55811 Nudix
2 2 2 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
2 2 1 0 SCOP 54285 MoaD/ThiS
2 2 2 1 SCOP 142695 RibA-like
2 2 1 1 SCOP 55205 EPT/RTPC-like
2 2 1 1 SCOP 51395 FMN-linked oxidoreductases
2 2 2 1 SCOP 64307 SirA-like
2 2 1 1 SCOP 48576 Terpenoid synthases
2 2 2 0 SCOP 50182 Sm-like ribonucleoproteins
2 2 1 0 SCOP 50978 WD40 repeat-like
2 2 1 1 SCOP 48256 Citrate synthase
2 2 1 0 SCOP 50891 Cyclophilin-like
2 2 1 1 SCOP 56634 Heme-dependent catalase-like
2 2 2 1 SCOP 56322 ADC synthase
2 2 2 0 SCOP 54001 Cysteine proteinases
2 2 1 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 2 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
2 2 2 0 SCOP 51306 LexA/Signal peptidase
2 2 1 0 SCOP 52266 SGNH hydrolase
2 2 2 0 SCOP 52058 L domain-like
2 2 2 0 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
2 2 1 1 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
2 2 2 2 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 2 1 SCOP 51717 Dihydropteroate synthetase-like
2 2 1 0 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
2 2 2 0 SCOP 51230 Single hybrid motif
2 2 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 2 2 1 SCOP 51679 Bacterial luciferase-like
2 2 2 0 SCOP 56349 DNA breaking-rejoining enzymes
2 2 2 0 SCOP 89550 PHP domain-like
2 2 2 0 SCOP 55166 Hedgehog/DD-peptidase
2 2 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 2 2 SCOP 56762 HydB/Nqo4-like
2 2 2 2 SCOP 52467 DHS-like NAD/FAD-binding domain
2 2 1 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
2 2 2 1 SCOP 54736 ClpS-like
2 2 2 1 SCOP 53732 Aconitase iron-sulfur domain
2 2 1 1 SCOP 56219 DNase I-like
2 2 2 0 SCOP 54975 Acylphosphatase/BLUF domain-like
2 2 1 0 SCOP 51391 Thiamin phosphate synthase
2 2 2 1 SCOP 52335 Methylglyoxal synthase-like
2 2 1 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
2 2 1 0 SCOP 141457 BH3618-like
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 2 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
2 2 2 0 SCOP 50370 Ricin B-like lectins
2 2 2 0 SCOP 81923 Double Clp-N motif
2 2 2 0 SCOP 160544 EscU C-terminal domain-like
2 2 1 0 SCOP 47188 Hemerythrin-like
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 2 0 SCOP 52009 Phosphohistidine domain
2 1 1 0 SCOP 49265 Fibronectin type III
2 2 2 0 SCOP 116726 TrkA C-terminal domain-like
2 1 1 1 SCOP 48029 FliG
2 2 1 1 SCOP 140990 FtsH protease domain-like
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
2 1 1 0 SCOP 143968 UbiD C-terminal domain-like
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
2 2 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
2 2 1 1 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
2 1 1 0 SCOP 63380 Riboflavin synthase domain-like
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 2 1 SCOP 63882 MoeA N-terminal region -like
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
2 2 2 0 SCOP 117892 Band 7/SPFH domain
2 2 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 2 0 SCOP 69255 gp5 N-terminal domain-like
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 81271 TGS-like
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 89000 post-HMGL domain-like
2 2 2 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 48013 NusB-like
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 1 SCOP 142433 CinA-like
1 1 1 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 64376 YlxR-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 0 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 0 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 47729 IHF-like DNA-binding proteins
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 51316 Mss4-like
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 111337 QueA-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 0 SCOP 53254 Phosphoglycerate mutase-like
1 1 1 0 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 1 0 SCOP 55229 Cell division protein MinE topological specificity domain
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 0 SCOP 117130 CsrA-like
1 1 1 0 SCOP 50685 Barwin-like endoglucanases
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 117991 YbeD/HP0495-like
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 75169 DsrEFH-like
1 1 1 1 SCOP 56796 Dehydroquinate synthase-like
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 48371 ARM repeat
1 1 1 0 SCOP 50985 RCC1/BLIP-II
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 52949 Macro domain-like
1 1 1 0 SCOP 55315 L30e-like
1 1 1 0 SCOP 55469 FMN-dependent nitroreductase-like
1 1 1 1 SCOP 56672 DNA/RNA polymerases
1 1 1 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
1 1 1 0 SCOP 54427 NTF2-like
1 1 1 0 SCOP 52499 Isochorismatase-like hydrolases
1 1 1 0 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
1 1 1 1 SCOP 51445 (Trans)glycosidases
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 54928 RNA-binding domain, RBD
1 1 1 0 SCOP 53639 AraD/HMP-PK domain-like
1 1 1 0 SCOP 52972 ITPase-like
1 1 1 0 SCOP 51197 Clavaminate synthase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 1 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
1 1 1 1 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 56529 FAH
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 58113 Apolipoprotein A-I
1 1 1 1 SCOP 52151 FabD/lysophospholipase-like
1 1 1 0 SCOP 69618 HemD-like
1 1 1 0 SCOP 52768 Arginase/deacetylase
1 1 1 1 SCOP 103378 2-methylcitrate dehydratase PrpD
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 81442 Cytochrome c oxidase subunit I-like
1 1 1 1 SCOP 53800 Chelatase
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 46458 Globin-like
1 1 1 1 SCOP 51069 Carbonic anhydrase
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 102405 MCP/YpsA-like
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 0 SCOP 81324 Voltage-gated potassium channels
1 1 1 0 SCOP 55073 Nucleotide cyclase
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 54909 Dimeric alpha+beta barrel
1 1 1 0 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 1 SCOP 50494 Trypsin-like serine proteases
1 1 1 0 SCOP 47598 Ribbon-helix-helix
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 54523 Pili subunits
1 1 1 0 SCOP 82697 PurS-like
1 1 1 1 SCOP 53807 "Helical backbone" metal receptor
1 1 1 0 SCOP 50022 ISP domain
1 1 1 0 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 53300 vWA-like
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 158682 TerB-like
1 1 1 0 SCOP 117782 YbjQ-like
1 1 1 1 SCOP 63892 Pyridoxine 5'-phosphate synthase
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 54913 GlnB-like
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 1 SCOP 110399 ThiG-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 159894 YgaC/TfoX-N like
1 1 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
1 1 1 0 SCOP 49879 SMAD/FHA domain
1 1 1 1 SCOP 54111 Urease, gamma-subunit
1 1 1 1 SCOP 51278 Urease, beta-subunit
1 1 1 1 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
1 1 1 0 SCOP 160719 gpW/gp25-like
1 1 1 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 0 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
1 1 1 0 SCOP 103025 Folate-binding domain
1 1 1 0 SCOP 159594 XCC0632-like
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 1 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 140931 Fic-like
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 101116 Flagellar export chaperone FliS
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 53163 HybD-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 69917 OMPT-like
1 1 1 0 SCOP 50331 MOP-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 89155 TorD-like
1 1 1 0 SCOP 161266 Gam-like
1 1 1 0 SCOP 103247 TT1751-like
1 1 1 0 SCOP 101498 Anti-sigma factor FlgM
1 1 1 0 SCOP 103515 Autotransporter
1 1 1 0 SCOP 55136 Probable bacterial effector-binding domain
1 1 1 1 SCOP 52738 Methylesterase CheB, C-terminal domain
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 109709 KorB DNA-binding domain-like
1 1 1 0 SCOP 75708 Chemotaxis phosphatase CheZ
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 0 SCOP 141452 Hcp1-like
1 1 1 1 SCOP 111321 AF1104-like
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 63867 MoeA C-terminal domain-like
1 1 1 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
1 1 1 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 90123 ABC transporter transmembrane region
1 1 1 0 SCOP 143865 CorA soluble domain-like
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 69279 Phage tail proteins
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 160214 FlaG-like
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 160443 SMR domain-like
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 0 SCOP 102645 CoaB-like
1 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
1 1 1 0 SCOP 54106 LysM domain
1 1 1 1 SCOP 56931 Outer membrane phospholipase A (OMPLA)
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 1 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 63848 Cell-division inhibitor MinC, C-terminal domain
1 1 1 0 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 158752 HP0242-like
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 1 SCOP 51971 Nucleotide-binding domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 158472 HAMP domain-like
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 48334 DNA repair protein MutS, domain III
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 0 SCOP 52964 TolB, N-terminal domain
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 140731 PA2201 C-terminal domain-like
1 1 1 0 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
1 1 1 0 SCOP 51984 MurCD N-terminal domain
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 140496 HP1531-like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
1 1 1 0 SCOP 74942 YhbC-like, C-terminal domain
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 69287 Urease metallochaperone UreE, N-terminal domain
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 51269 AFP III-like domain
1 1 1 0 SCOP 47757 Chemotaxis receptor methyltransferase CheR, N-terminal domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 110942 HSP90 C-terminal domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 1 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 1 SCOP 74778 Aconitase B, N-terminal domain
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 1 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 69737 Urease metallochaperone UreE, C-terminal domain

Jump to [ Top of page · Assignment statistics ]


The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Troponin coil-coiled subunits
SCOP superfamily Dimerization motif of sir4
SCOP superfamily eEF1-gamma domain
SCOP superfamily Positive stranded ssRNA viruses
SCOP superfamily BAH domain
SCOP superfamily BRCA2 helical domain
SCOP superfamily F1F0 ATP synthase subunit B, membrane domain
SCOP superfamily Clc chloride channel
SCOP superfamily Aquaporin-like
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily Cullin homology domain
SCOP superfamily MurE/MurF N-terminal domain
SCOP superfamily Bacterial hemolysins
SCOP superfamily Variant surface glycoprotein (N-terminal domain)
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Tropomyosin
SCOP superfamily FYVE/PHD zinc finger
SCOP superfamily Metallothionein
SCOP superfamily Insulin-like
SCOP superfamily delta-Endotoxin (insectocide), N-terminal domain
SCOP superfamily gp120 core
SCOP superfamily PYP-like sensor domain (PAS domain)
SCOP superfamily PAP/Archaeal CCA-adding enzyme, C-terminal domain
SCOP superfamily YcfA/nrd intein domain
SCOP superfamily Amine oxidase N-terminal region
SCOP superfamily CAD & PB1 domains
SCOP superfamily His-Me finger endonucleases
SCOP superfamily SpoIIaa-like
SCOP superfamily Carbohydrate binding domain
SCOP superfamily Sialidases
SCOP superfamily Hemopexin-like domain
SCOP superfamily PRC-barrel domain
SCOP superfamily SH3-domain
SCOP superfamily HSP20-like chaperones
SCOP superfamily Lipase/lipooxygenase domain (PLAT/LH2 domain)
SCOP superfamily 14-3-3 protein
SCOP superfamily Sec7 domain
SCOP superfamily A virus capsid protein alpha-helical domain
SCOP superfamily Regulator of G-protein signaling, RGS
SCOP superfamily DBL homology domain (DH-domain)
SCOP superfamily EF-hand
SCOP superfamily Cytochromes
SCOP superfamily Apolipoprotein
SCOP superfamily Kix domain of CBP (creb binding protein)
SCOP superfamily Spectrin repeat
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily YfgJ-like
SCOP superfamily BT0923-like
SCOP superfamily Cation efflux protein cytoplasmic domain-like
SCOP superfamily TM1646-like
SCOP superfamily occludin/ELL-like
SCOP superfamily CSL zinc finger
SCOP superfamily XisI-like
SCOP superfamily YwmB-like
SCOP superfamily Pentapeptide repeat-like
SCOP superfamily Duffy binding domain-like
SCOP superfamily Pseudo ankyrin repeat-like
SCOP superfamily IpaD-like
SCOP superfamily YozE-like
SCOP superfamily Dcp2 domain-like
SCOP superfamily FlgN-like
SCOP superfamily YppE-like
SCOP superfamily ISY1 domain-like
SCOP superfamily DNA mismatch repair protein MutL
SCOP superfamily Fzo-like conserved region
SCOP superfamily OmpH-like
SCOP superfamily Hypothetical protein yfbM
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Oligosaccharyltransferase subunit ost4p
SCOP superfamily Sensory domain-like
SCOP superfamily JAB1/MPN domain
SCOP superfamily Stabilizer of iron transporter SufD
SCOP superfamily NAC domain
SCOP superfamily SspB-like
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily Typo IV secretion system protein TraC

Jump to [ Top of page · Assignment statistics ]