SUPERFAMILY 1.75 HMM library and genome assignments server


Porphyromonas asaccharolytica DSM 20707 family assignments

Taxonomy
Taxonomy browser entry

Bacteria; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; Porphyromonas asaccharolytica; Porphyromonas asaccharolytica DSM 20707

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 1699 total
1156 (68 %) with assignment
372 average length
56 % amino acid coverage
Domains: 1705 total
525 unique superfamilies
308 unique families
309 average length
3.2 average superfamily size
69 % formed by duplication
Domain combinations: 289 domain pairs
696 unique architectures

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Family assignments

Domains

Proteins

SCOP link

Families

14 14 SCOP 52686 ABC transporter ATPase domain-like
11 7 SCOP 81268 Tandem AAA-ATPase domain
10 8 SCOP 81269 Extended AAA-ATPase domain
10 10 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
10 10 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
9 9 SCOP 52592 G proteins
8 7 SCOP 52652 Nitrogenase iron protein-like
6 6 SCOP 53417 GABA-aminotransferase-like
6 6 SCOP 51751 Tyrosine-dependent oxidoreductases
5 3 SCOP 82867 Multidrug efflux transporter AcrB transmembrane domain
5 5 SCOP 52318 Class I glutamine amidotransferases (GAT)
4 4 SCOP 54002 Papain-like
3 3 SCOP 51868 6-phosphogluconate dehydrogenase-like, N-terminal domain
3 3 SCOP 52541 Nucleotide and nucleoside kinases
3 3 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
3 3 SCOP 54535 FKBP immunophilin/proline isomerase
3 3 SCOP 52243 Cobalamin (vitamin B12)-binding domain
3 1 SCOP 52484 Transhydrogenase domain III (dIII)
3 3 SCOP 56802 Acetyl-CoA synthetase-like
3 3 SCOP 51570 Class I aldolase
3 3 SCOP 50448 Elongation factors
3 3 SCOP 53168 Purine and uridine phosphorylases
3 2 SCOP 53068 Actin/HSP70
3 2 SCOP 56067 BC ATP-binding domain-like
3 2 SCOP 74656 CoA transferase alpha subunit-like
3 1 SCOP 55974 S-adenosylmethionine synthetase
3 3 SCOP 55879 DNA gyrase/MutL, N-terminal domain
3 3 SCOP 52901 Glutathione peroxidase-like
2 2 SCOP 52100 Tail specific protease, catalytic domain
2 2 SCOP 54815 Prokaryotic type KH domain (KH-domain type II)
2 2 SCOP 52103 Crotonase-like
2 2 SCOP 53624 MurCDEF
2 2 SCOP 54827 Enolase N-terminal domain-like
2 2 SCOP 51943 FAD/NAD-linked reductases, N-terminal and central domains
2 2 SCOP 75648 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 SCOP 53272 Phosphoribosyltransferases (PRTases)
2 2 SCOP 102663 Phosphotransacetylase
2 2 SCOP 52670 RecA protein-like (ATPase-domain)
2 2 SCOP 53138 Ribosomal protein L18 and S11
2 1 SCOP 54229 Ribonuclease PH domain 1-like
2 2 SCOP 53329 Formyltransferase
2 2 SCOP 53804 Cobalt chelatase CbiK
2 1 SCOP 52441 BC N-terminal domain-like
2 2 SCOP 52414 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
2 1 SCOP 53902 Thiolase-related
2 2 SCOP 53402 Cystathionine synthase-like
2 1 SCOP 53080 Acetokinase-like
2 1 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
2 2 SCOP 54212 Translational machinery components
2 2 SCOP 75621 Release factor
2 2 SCOP 64372 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
2 2 SCOP 56713 Prokaryotic type I DNA topoisomerase
2 2 SCOP 48191 UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
2 2 SCOP 56646 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
2 2 SCOP 51396 FMN-linked oxidoreductases
2 2 SCOP 111338 QueA-like
2 2 SCOP 53099 Ribonuclease H
2 2 SCOP 55505 Neurolysin-like
2 2 SCOP 140754 PG0816-like
2 2 SCOP 48558 L-aspartase/fumarase
2 1 SCOP 143860 Polyphosphate kinase C-terminal domain
2 2 SCOP 50678 ValRS/IleRS/LeuRS editing domain
2 1 SCOP 142678 Glycine dehydrogenase subunits (GDC-P)
2 1 SCOP 55327 PurM N-terminal domain-like
2 2 SCOP 142721 PyrH-like
2 2 SCOP 50282 Cold shock DNA-binding domain-like
2 2 SCOP 56720 Type II DNA topoisomerase
2 2 SCOP 55348 GAPDH-like
2 2 SCOP 55822 YrdC-like
2 2 SCOP 55209 Enolpyruvate transferase, EPT
2 2 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
2 2 SCOP 51704 Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain
2 2 SCOP 47204 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
2 2 SCOP 47241 Ferritin
1 1 SCOP 74657 CoA transferase beta subunit-like
1 1 SCOP 56797 Dehydroquinate synthase, DHQS
1 1 SCOP 56350 Lambda integrase-like, catalytic core
1 1 SCOP 56323 ADC synthase
1 1 SCOP 56195 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 SCOP 56673 DNA polymerase I
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 75073 Hydantoinase (dihydropyrimidinase), catalytic domain
1 1 SCOP 56575 Serpins
1 1 SCOP 56426 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 SCOP 75218 SpoU-like RNA 2'-O ribose methyltransferase
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 75041 SelR domain
1 1 SCOP 75292 YjeF C-terminal domain-like
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75323 Exonuclease RecJ
1 1 SCOP 69912 Clc chloride channel
1 1 SCOP 69892 Iron-containing alcohol dehydrogenase
1 1 SCOP 56948 Ligand-gated protein channel
1 1 SCOP 63412 MPP-like
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 63971 Inosicase
1 1 SCOP 64264 Prokaryotic ribosomal protein L17
1 1 SCOP 64198 AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
1 1 SCOP 63976 Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
1 1 SCOP 63984 Sir2 family of transcriptional regulators
1 1 SCOP 64168 SurE-like
1 1 SCOP 64511 Phosphoserine phosphatase
1 1 SCOP 68924 PEP carboxykinase N-terminal domain
1 1 SCOP 63966 Precorrin-8X methylmutase CbiC/CobH
1 1 SCOP 69766 IpsF-like
1 1 SCOP 56732 DNA primase DnaG catalytic core
1 1 SCOP 56753 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 SCOP 69746 Pseudouridine synthase II TruB
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 63893 Pyridoxine 5'-phosphate synthase
1 1 SCOP 69501 DTD-like
1 1 SCOP 142696 RibA-like
1 1 SCOP 56822 Hybrid cluster protein (prismane protein)
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 75459 Pseudouridine synthase RsuA/RluD
1 1 SCOP 160449 PG1857-like
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 117458 FumA C-terminal domain-like
1 1 SCOP 117392 D-lysine 5,6-aminomutase alpha subunit, KamD
1 1 SCOP 111332 NAD kinase-like
1 1 SCOP 111327 Urocanase
1 1 SCOP 111305 Recombination protein RecR
1 1 SCOP 111155 Porphyromonas-type peptidylarginine deiminase
1 1 SCOP 110520 Methenyltetrahydrofolate synthetase
1 1 SCOP 110400 ThiG-like
1 1 SCOP 110396 CutC-like
1 1 SCOP 103264 Chorismate synthase, AroC
1 1 SCOP 103026 Aminomethyltransferase folate-binding domain
1 1 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 102755 Hsp90 middle domain
1 1 SCOP 140479 LemA-like
1 1 SCOP 140932 Fic-like
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 159832 PBP transglycosylase domain-like
1 1 SCOP 159720 mannose-1-phosphate guanylyl transferase
1 1 SCOP 159400 Imidazolonepropionase-like
1 1 SCOP 159112 RNB domain-like
1 1 SCOP 158600 MgsA/YrvN C-terminal domain-like
1 1 SCOP 158495 PG0775 C-terminal domain-like
1 1 SCOP 143916 RNase Z-like
1 1 SCOP 143728 PPK middle domain-like
1 1 SCOP 143642 LplA-like
1 1 SCOP 143598 YojJ-like
1 1 SCOP 142824 ComB-like
1 1 SCOP 142755 NadA-like
1 1 SCOP 142635 hypothetical RNA methyltransferase
1 1 SCOP 141245 Ribosomal protein L19
1 1 SCOP 102706 NIF3 (NGG1p interacting factor 3)-like
1 1 SCOP 102656 PdxA-like
1 1 SCOP 88788 N6 adenine-specific DNA methylase, DAM
1 1 SCOP 88771 PFOR PP module
1 1 SCOP 88760 TK-like PP module
1 1 SCOP 88746 PFOR Pyr module
1 1 SCOP 88735 TK-like Pyr module
1 1 SCOP 82749 FemXAB nonribosomal peptidyltransferases
1 1 SCOP 82661 Poly A polymerase head domain-like
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 82497 DPP6 catalytic domain-like
1 1 SCOP 82475 MraW-like putative methyltransferases
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82172 DPP6 N-terminal domain-like
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 75626 YebC-like
1 1 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
1 1 SCOP 89032 Cobalamin adenosyltransferase
1 1 SCOP 89494 HMGL-like
1 1 SCOP 102646 CoaB-like
1 1 SCOP 102581 (Uracil-5-)-methyltransferase
1 1 SCOP 102517 N-acetylmuramoyl-L-alanine amidase-like
1 1 SCOP 102115 Biotin synthase
1 1 SCOP 102079 Putative alpha-L-fucosidase, catalytic domain
1 1 SCOP 101961 Stabilizer of iron transporter SufD
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101340 HD domain
1 1 SCOP 101263 Methenyltetrahydrofolate cyclohydrolase-like
1 1 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 89624 Ribose/Galactose isomerase RpiB/AlsB
1 1 SCOP 89503 Ketopantoate hydroxymethyltransferase PanB
1 1 SCOP 89800 Deoxycytidylate deaminase-like
1 1 SCOP 52584 Phosphoribulokinase/pantothenate kinase
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52010 Pyruvate phosphate dikinase, central domain
1 1 SCOP 52005 Class III anaerobic ribonucleotide reductase NRDD subunit
1 1 SCOP 51934 Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
1 1 SCOP 51913 FAD-linked reductases, N-terminal domain
1 1 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
1 1 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
1 1 SCOP 51718 Dihydropteroate synthetase
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 51707 Glutamate mutase, large subunit
1 1 SCOP 51691 NadC C-terminal domain-like
1 1 SCOP 51659 Endonuclease IV
1 1 SCOP 51629 Pyruvate phosphate dikinase, C-terminal domain
1 1 SCOP 52081 Ribosomal proteins L15p and L18e
1 1 SCOP 52097 Clp protease, ClpP subunit
1 1 SCOP 52122 Lumazine synthase
1 1 SCOP 52513 NagB-like
1 1 SCOP 52491 Tubulin, GTPase domain
1 1 SCOP 52471 C-terminal domain of the electron transfer flavoprotein alpha subunit
1 1 SCOP 52403 N-type ATP pyrophosphatases
1 1 SCOP 52331 Aspartyl dipeptidase PepE
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52305 Type II 3-dehydroquinate dehydratase
1 1 SCOP 52256 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 SCOP 52219 Flavodoxin-related
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52152 FabD-like
1 1 SCOP 52142 Uracil-DNA glycosylase
1 1 SCOP 51609 D-glucarate dehydratase-like
1 1 SCOP 51605 Enolase
1 1 SCOP 51599 Class I DAHP synthetase
1 1 SCOP 50250 Anticodon-binding domain
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 48577 Isoprenyl diphosphate synthases
1 1 SCOP 48572 HAL/PAL-like
1 1 SCOP 48335 DNA repair protein MutS, domain III
1 1 SCOP 48154 Mismatch glycosylase
1 1 SCOP 48151 Endonuclease III
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 47447 Signal peptide-binding domain
1 1 SCOP 46947 Ribosomal protein S13
1 1 SCOP 46610 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 SCOP 50476 PNP-oxidase like
1 1 SCOP 51553 NagZ-like
1 1 SCOP 51446 Amylase, catalytic domain
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51392 Thiamin phosphate synthase
1 1 SCOP 51372 D-ribulose-5-phosphate 3-epimerase
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51284 dUTPase-like
1 1 SCOP 51231 Biotinyl/lipoyl-carrier proteins and domains
1 1 SCOP 51191 Type I phosphomannose isomerase
1 1 SCOP 51183 dTDP-sugar isomerase
1 1 SCOP 51162 UDP N-acetylglucosamine acyltransferase
1 1 SCOP 50719 Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
1 1 SCOP 50495 Prokaryotic proteases
1 1 SCOP 46566 Chaperone J-domain
1 1 SCOP 56184 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
1 1 SCOP 55272 DNA repair protein MutS, domain I
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55121 Pseudouridine synthase I TruA
1 1 SCOP 55117 Formiminotransferase domain of formiminotransferase-cyclodeaminase.
1 1 SCOP 55084 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 SCOP 55069 Peptide methionine sulfoxide reductase
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 54981 EF-G/eEF-2 domains III and V
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 54748 Ribosomal L11/L12e N-terminal domain
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55299 YjgF/L-PSP
1 1 SCOP 55368 Dihydrodipicolinate reductase-like
1 1 SCOP 56105 SAICAR synthase
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56085 Pyruvate phosphate dikinase, N-terminal domain
1 1 SCOP 56054 Ribosomal protein L6
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56043 PurM C-terminal domain-like
1 1 SCOP 56038 B3/B4 domain of PheRS, PheT
1 1 SCOP 55921 Creatinase/aminopeptidase
1 1 SCOP 55832 Thymidylate synthase/dCMP hydroxymethylase
1 1 SCOP 55667 Ribonuclease PH domain 2-like
1 1 SCOP 55621 GTP cyclohydrolase I
1 1 SCOP 55502 Neutral endopeptidase (neprilysin)
1 1 SCOP 55425 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 SCOP 54720 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 53255 Cofactor-dependent phosphoglycerate mutase
1 1 SCOP 53240 Malic enzyme N-domain
1 1 SCOP 53235 Tetrahydrofolate dehydrogenase/cyclohydrolase
1 1 SCOP 53224 Aminoacid dehydrogenases
1 1 SCOP 53204 Bacterial dinuclear zinc exopeptidases
1 1 SCOP 53183 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 SCOP 53179 Peptidyl-tRNA hydrolase-like
1 1 SCOP 53134 RuvC resolvase
1 1 SCOP 52976 Maf-like
1 1 SCOP 52973 ITPase (Ham1)
1 1 SCOP 52955 Anticodon-binding domain of Class II aaRS
1 1 SCOP 52931 Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
1 1 SCOP 52789 Low-molecular-weight phosphotyrosine protein phosphatases
1 1 SCOP 53296 Phosphoribosylpyrophosphate synthetase-like
1 1 SCOP 53324 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
1 1 SCOP 53397 Beta-eliminating lyases
1 1 SCOP 53914 Chalcone synthase-like
1 1 SCOP 53851 Phosphate binding protein-like
1 1 SCOP 53796 PEP carboxykinase C-terminal domain
1 1 SCOP 53791 Tetrapyrrole methylase
1 1 SCOP 53785 Phosphofructokinase
1 1 SCOP 53775 Glutaminase/Asparaginase
1 1 SCOP 53760 Peptidoglycan biosynthesis glycosyltransferase MurG
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53672 Aspartate/ornithine carbamoyltransferase
1 1 SCOP 53629 Folylpolyglutamate synthetase
1 1 SCOP 53598 Dihydrofolate reductases
1 1 SCOP 53464 glucose-1-phosphate thymidylyltransferase
1 1 SCOP 52734 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)

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The following families have one or more weak hits:

SCOP family Cation efflux protein transmembrane domain-like
SCOP family MetI-like
SCOP family Diacylglycerol kinase-like
SCOP family GpdQ-like
SCOP family CorC/HlyC domain-like
SCOP family Ribosomal protein L10-like
SCOP family Cation efflux protein cytoplasmic domain-like
SCOP family PG0945 N-terminal domain-like
SCOP family CbiG N-terminal domain-like
SCOP family CobE/GbiG C-terminal domain-like
SCOP family Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
SCOP family Smr-associated domain
SCOP family IVS-encoded protein-like
SCOP family Ribosomal protein L33p
SCOP family Ribosomal protein L32p
SCOP family Rhomboid-like
SCOP family Magnesium transport protein CorA, transmembrane region
SCOP family Dac-like
SCOP family Sulfatase-modifying factor-like
SCOP family Ribosomal protein L31p
SCOP family Ribosomal protein L28
SCOP family ApbE-like
SCOP family Serine dehydratase beta chain-like
SCOP family TRCF domain
SCOP family TTP0101/SSO1404-like
SCOP family Transposase IS200-like
SCOP family Ribosomal protein L35p
SCOP family YjbR-like
SCOP family RibD C-terminal domain-like
SCOP family TrmB-like
SCOP family YhhF-like
SCOP family Glutaminyl-peptide cyclotransferase-like
SCOP family CoaX-like
SCOP family CinA-like
SCOP family Nqo1 FMN-binding domain-like
SCOP family LON domain-like
SCOP family YdhA-like
SCOP family NfeD domain-like
SCOP family CarD-like
SCOP family Ribosomal protein L21p
SCOP family SP0561-like
SCOP family PPK N-terminal domain-like
SCOP family FtsK C-terminal domain-like
SCOP family DNA mismatch repair protein MutL
SCOP family CYTH domain
SCOP family PaaD-like
SCOP family NifU C-terminal domain-like
SCOP family Band 7/SPFH domain
SCOP family D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
SCOP family MazG-like
SCOP family ProC C-terminal domain-like
SCOP family TrmE connector domain
SCOP family XseB-like
SCOP family TrkA C-terminal domain-like
SCOP family OmpH-like
SCOP family HlyD-like secretion proteins
SCOP family CbiD-like
SCOP family YfcE-like
SCOP family FGAM synthase PurL, PurS-like domain
SCOP family Sporulation related repeat
SCOP family FabZ-like
SCOP family ParB-like nuclease domain
SCOP family Glycosyl transferases group 1
SCOP family ROK
SCOP family YeaZ-like
SCOP family Ppx/GppA phosphatase
SCOP family MoCo biosynthesis proteins
SCOP family Ribosomal L27 protein
SCOP family PhoU-like
SCOP family FGAM synthase PurL, linker domain
SCOP family Conserved carboxylase domain
SCOP family KorB DNA-binding domain-like
SCOP family DnaK suppressor protein DksA, alpha-hairpin domain
SCOP family Preprotein translocase SecY subunit
SCOP family Multidrug resistance efflux transporter EmrE
SCOP family Predicted metal-dependent hydrolase
SCOP family OmpA-like
SCOP family RelA/SpoT domain
SCOP family YigZ N-terminal domain-like
SCOP family Trigger factor ribosome-binding domain
SCOP family JAB1/MPN domain
SCOP family Ribosomal protein L11 methyltransferase PrmA
SCOP family NOL1/NOP2/sun
SCOP family Putative Holliday junction resolvase RuvX
SCOP family Oxygen-independent coproporphyrinogen III oxidase HemN
SCOP family Peptidoglycan hydrolase LytM
SCOP family Aminomethyltransferase beta-barrel domain
SCOP family ADP-ribosylglycohydrolase
SCOP family RecQ helicase DNA-binding domain-like
SCOP family Penicillinase repressor
SCOP family Heat shock protein 70kD (HSP70), C-terminal subdomain
SCOP family ABC transporter transmembrane region
SCOP family Arginine decarboxylase
SCOP family Ribosome-binding factor A, RbfA
SCOP family PaaI/YdiI-like
SCOP family UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
SCOP family N5-glutamine methyltransferase, HemK
SCOP family Macro domain
SCOP family Polygalacturonase inhibiting protein PGIP
SCOP family 4-alpha-glucanotransferase, N-terminal domain
SCOP family PHP domain
SCOP family rRNA adenine dimethylase-like
SCOP family Pyruvate oxidase and decarboxylase Pyr module
SCOP family Eukaryotic ODC-like
SCOP family Alanine racemase
SCOP family Sigma4 domain
SCOP family Mechanosensitive channel protein MscS (YggB), transmembrane region
SCOP family GIY-YIG endonuclease
SCOP family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
SCOP family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
SCOP family Mechanosensitive channel protein MscS (YggB), C-terminal domain
SCOP family N-utilization substance G protein NusG, N-terminal domain
SCOP family SufE-like
SCOP family Predicted hydrolases Cof
SCOP family YbeA-like
SCOP family PP-loop ATPase
SCOP family Shikimate dehydrogenase-like
SCOP family SAH/MTA deaminase-like
SCOP family SAH/MTA deaminase-like
SCOP family ATP-dependent riboflavin kinase-like
SCOP family Mechanosensitive channel protein MscS (YggB), middle domain
SCOP family N-utilization substance G protein NusG, C-terminal domain
SCOP family Double Clp-N motif
SCOP family HCP-like
SCOP family Poly A polymerase C-terminal region-like
SCOP family Helical scaffold and wing domains of SecA
SCOP family Putative methyltransferase TM0872, insert domain
SCOP family Pre-protein crosslinking domain of SecA
SCOP family Chromosomal replication initiation factor DnaA C-terminal domain IV
SCOP family Calcium ATPase, transmembrane domain M
SCOP family Meta-cation ATPase, catalytic domain P
SCOP family Calcium ATPase, transduction domain A
SCOP family F1F0 ATP synthase subunit B, membrane domain
SCOP family F1F0 ATP synthase subunit C
SCOP family Gated mechanosensitive channel
SCOP family Voltage-gated potassium channels
SCOP family TGS domain
SCOP family RNA 2'-O ribose methyltransferase substrate binding domain
SCOP family Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
SCOP family YhbC-like, N-terminal domain
SCOP family Glucose-inhibited division protein B (GidB)
SCOP family YjeE-like
SCOP family Ngr ectodomain-like
SCOP family HtrA-like serine proteases
SCOP family Ribosome binding protein Y (YfiA homologue)
SCOP family Transcription factor NusA, N-terminal domain
SCOP family HemD-like
SCOP family Molybdenum cofactor biosynthesis protein MoeB
SCOP family Leucine rich effector protein YopM
SCOP family Tricorn protease N-terminal domain
SCOP family RecG "wedge" domain
SCOP family RNase III catalytic domain-like
SCOP family 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
SCOP family Cytidylytransferase
SCOP family C-terminal domain of ProRS
SCOP family Carbamilase
SCOP family Autoinducer-2 production protein LuxS
SCOP family Methylmalonyl-CoA epimerase
SCOP family YjeF N-terminal domain-like
SCOP family Potassium channel NAD-binding domain
SCOP family Riboflavin synthase
SCOP family TS-N domain
SCOP family MurE/MurF N-terminal domain
SCOP family Ferredoxin reductase FAD-binding domain-like
SCOP family MarR-like transcriptional regulators
SCOP family SNARE fusion complex
SCOP family Coiled-coil domain of nucleotide exchange factor GrpE
SCOP family DnaJ/Hsp40 cysteine-rich domain
SCOP family Ribosomal protein L36
SCOP family Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
SCOP family Rubredoxin
SCOP family DNA primase zinc finger
SCOP family Methionyl-tRNA synthetase (MetRS), Zn-domain
SCOP family Ribosomal protein S14
SCOP family Outer membrane efflux proteins (OEP)
SCOP family Outer membrane protein
SCOP family YihX-like
SCOP family beta-Lactamase/D-ala carboxypeptidase
SCOP family Insert subdomain of RNA polymerase alpha subunit
SCOP family FAH
SCOP family Penicillin binding protein dimerisation domain
SCOP family Lactate & malate dehydrogenases, C-terminal domain
SCOP family 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
SCOP family ROO N-terminal domain-like
SCOP family Glyoxalase II (hydroxyacylglutathione hydrolase)
SCOP family Class II glutamine amidotransferases
SCOP family ATP-binding domain of peptide synthetases
SCOP family Nitrite and sulphite reductase 4Fe-4S domain-like
SCOP family DNA polymerase III, beta subunit
SCOP family Phosphoglucomutase, C-terminal domain
SCOP family Histidine kinase
SCOP family Heat shock protein 90, HSP90, N-terminal domain
SCOP family N-acetylmuramoyl-L-alanine amidase-like
SCOP family 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
SCOP family Biotin holoenzyme synthetase
SCOP family N-terminal domain of RNase HI
SCOP family Ribosomal protein L9 N-domain
SCOP family Ribosomal protein L9 C-domain
SCOP family DHN aldolase/epimerase
SCOP family 6-pyruvoyl tetrahydropterin synthase
SCOP family NADH oxidase/flavin reductase
SCOP family Glucose 6-phosphate dehydrogenase-like
SCOP family Tubulin, C-terminal domain
SCOP family GAD domain
SCOP family RNA polymerase alpha subunit dimerisation domain
SCOP family C-terminal domain of arginine repressor
SCOP family Translation initiation factor IF3, C-terminal domain
SCOP family Heat shock protein 15 kD
SCOP family eIF1-like
SCOP family Ribosomal protein L30p/L7e
SCOP family Probable ACP-binding domain of malonyl-CoA ACP transacylase
SCOP family Bacterial exopeptidase dimerisation domain
SCOP family HMA, heavy metal-associated domain
SCOP family Ribosomal protein S6
SCOP family Anticodon-binding domain of PheRS
SCOP family Canonical RBD
SCOP family Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
SCOP family Ferredoxin domains from multidomain proteins
SCOP family GroEL-like chaperone, intermediate domain
SCOP family Ribosomal protein L22
SCOP family Eukaryotic type KH-domain (KH-domain type I)
SCOP family Ribosomal S5 protein, N-terminal domain
SCOP family Double-stranded RNA-binding domain (dsRBD)
SCOP family RecA protein, C-terminal domain
SCOP family Ribosomal protein L7/12, C-terminal domain
SCOP family Elongation factor Ts (EF-Ts), dimerisation domain
SCOP family NadC N-terminal domain-like
SCOP family 4HBT-like
SCOP family CBS-domain pair
SCOP family Ribosomal protein S16
SCOP family GreA transcript cleavage factor, C-terminal domain
SCOP family L-aminoacid/polyamine oxidase
SCOP family Translation initiation factor IF3, N-terminal domain
SCOP family 2Fe-2S ferredoxin domains from multidomain proteins
SCOP family ThiS
SCOP family GHMP Kinase, N-terminal domain
SCOP family RNase P protein
SCOP family HIT (HINT, histidine triad) family of protein kinase-interacting proteins
SCOP family L23p
SCOP family Penicillin-binding protein 2x (pbp-2x), c-terminal domain
SCOP family LysM domain
SCOP family DNA/RNA non-specific endonuclease
SCOP family Transglutaminase core
SCOP family Bacterial muramidase, catalytic domain
SCOP family Cytidine deaminase
SCOP family Fe-only hydrogenase
SCOP family L-arabinose binding protein-like
SCOP family TroA-like
SCOP family Ferrochelatase
SCOP family Oligosaccharide phosphorylase
SCOP family Phosphoglucomutase, first 3 domains
SCOP family ALDH-like
SCOP family Aspartate/glutamate racemase
SCOP family Arylsulfatase
SCOP family Alkaline phosphatase
SCOP family Thiamin biosynthesis kinases
SCOP family Spore coat polysaccharide biosynthesis protein SpsA
SCOP family AAT-like
SCOP family Type II DNA methylase
SCOP family COMT-like
SCOP family Integrin A (or I) domain
SCOP family MurCDEF C-terminal domain
SCOP family DNA repair protein MutS, domain II
SCOP family DnaQ-like 3'-5' exonuclease
SCOP family 5' to 3' exonuclease catalytic domain
SCOP family Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
SCOP family Transketolase C-terminal domain-like
SCOP family PDI-like
SCOP family Thioltransferase
SCOP family Shikimate kinase (AroK)
SCOP family Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
SCOP family D-Alanine ligase N-terminal domain
SCOP family Universal stress protein-like
SCOP family ETFP subunits
SCOP family Adenylyltransferase
SCOP family Dihydroorotate dehydrogenase B, PyrK subunit
SCOP family DJ-1/PfpI
SCOP family L-alanine dehydrogenase-like
SCOP family Formate/glycerate dehydrogenases, substrate-binding domain
SCOP family Quinone reductase
SCOP family CheY-related
SCOP family Initiation factor IF2/eIF5b, domain 3
SCOP family Gingipain R (RgpB), N-terminal domain
SCOP family Internalin LRR domain
SCOP family Carbamoyl phosphate synthetase, small subunit N-terminal domain
SCOP family R1 subunit of ribonucleotide reductase, C-terminal domain
SCOP family MurCD N-terminal domain
SCOP family N-terminal domain of adrenodoxin reductase-like
SCOP family LDH N-terminal domain-like
SCOP family Alcohol dehydrogenase-like, C-terminal domain
SCOP family "Hypothetical" protein ybl036c
SCOP family Alanine racemase-like, N-terminal domain
SCOP family Decarboxylase
SCOP family Type 1 signal peptidase
SCOP family BC C-terminal domain-like
SCOP family cAMP-binding domain
SCOP family gamma-carbonic anhydrase-like
SCOP family Galactoside acetyltransferase-like
SCOP family Head domain of nucleotide exchange factor GrpE
SCOP family alpha-Amylases, C-terminal beta-sheet domain
SCOP family Cyclophilin (peptidylprolyl isomerase)
SCOP family Ribosomal protein L25-like
SCOP family Pyruvoyl dependent aspartate decarboxylase, ADC
SCOP family Post formyltransferase domain
SCOP family DNA ligase/mRNA capping enzyme postcatalytic domain
SCOP family Myf domain
SCOP family Single strand DNA-binding domain, SSB
SCOP family DNA helicase RuvA subunit, N-terminal domain
SCOP family GroES
SCOP family eIF5a N-terminal domain-like
SCOP family Ribosomal proteins L24p and L21e
SCOP family FeoA-like
SCOP family FHA domain
SCOP family HSP20
SCOP family HSP40/DnaJ peptide-binding domain
SCOP family Invasin/intimin cell-adhesion fragments
SCOP family PKD domain
SCOP family Fibronectin type III
SCOP family Tetracyclin repressor-like, C-terminal domain
SCOP family Tetratricopeptide repeat (TPR)
SCOP family Ribosomal protein L7/12, oligomerisation (N-terminal) domain
SCOP family Glycerol-3-phosphate dehydrogenase
SCOP family HCDH C-domain-like
SCOP family C-terminal domain of glutamyl-tRNA synthetase (GluRS)
SCOP family Carbamoyl phosphate synthetase, large subunit connection domain
SCOP family N-terminal domain of DnaB helicase
SCOP family Antitermination factor NusB
SCOP family C-terminal domain of alpha and beta subunits of F1 ATP synthase
SCOP family HRDC domain from helicases
SCOP family 5' to 3' exonuclease, C-terminal subdomain
SCOP family C-terminal domain of RNA polymerase alpha subunit
SCOP family NAD+-dependent DNA ligase, domain 3
SCOP family DNA helicase RuvA subunit, middle domain
SCOP family Prokaryotic DNA-bending protein
SCOP family Homodimeric domain of signal transducing histidine kinase
SCOP family Domain of the SRP/SRP receptor G-proteins
SCOP family Acyl-carrier protein (ACP)
SCOP family Ribosomal protein S15
SCOP family Ribosomal protein S20
SCOP family Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
SCOP family Domains B1 and B5 of PheRS-beta, PheT
SCOP family DNA helicase RuvA subunit, C-terminal domain
SCOP family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
SCOP family Ribosomal protein S18
SCOP family Ribosomal protein L11, C-terminal domain
SCOP family GerE-like (LuxR/UhpA family of transcriptional regulators)
SCOP family PhoB-like
SCOP family Helicase DNA-binding domain
SCOP family Tetracyclin repressor-like, N-terminal domain
SCOP family C-terminal UvrC-binding domain of UvrB
SCOP family Phenylalanyl-tRNA synthetase (PheRS)
SCOP family Seryl-tRNA synthetase (SerRS)
SCOP family Ribosomal protein L29 (L29p)
SCOP family GreA transcript cleavage protein, N-terminal domain
SCOP family Dihydropyrimidine dehydrogenase, N-terminal domain
SCOP family Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain

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