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Nanoarchaeum equitans Kin4-M superfamily assignments

Taxonomy
Taxonomy browser entry

Archaea; DPANN group; Nanoarchaeota; Nanoarchaeales; Nanoarchaeaceae; Nanoarchaeum; Nanoarchaeum equitans; Nanoarchaeum equitans Kin4-M

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 540 total
348 (64 %) with assignment
280 average length
56 % amino acid coverage
Domains: 466 total
228 unique superfamilies
82 unique families
241 average length
2 average superfamily size
51 % formed by duplication
Domain combinations: 90 domain pairs
258 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

42 39 21 5 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
13 13 10 1 SCOP 50249 Nucleic acid-binding proteins
12 12 8 1 SCOP 46785 "Winged helix" DNA-binding domain
12 12 3 3 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
11 11 9 1 SCOP 52374 Nucleotidylyl transferase
10 10 8 2 SCOP 54211 Ribosomal protein S5 domain 2-like
9 9 8 1 SCOP 55681 Class II aaRS and biotin synthetases
7 7 2 0 SCOP 102114 Radical SAM enzymes
7 7 6 2 SCOP 50447 Translation proteins
6 6 4 1 SCOP 50104 Translation proteins SH3-like domain
6 6 3 2 SCOP 56281 Metallo-hydrolase/oxidoreductase
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
5 5 4 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
5 5 5 0 SCOP 88697 PUA domain-like
4 4 1 0 SCOP 57829 Zn-binding ribosomal proteins
4 4 2 1 SCOP 52833 Thioredoxin-like
4 4 2 0 SCOP 56300 Metallo-dependent phosphatases
4 3 2 0 SCOP 51658 Xylose isomerase-like
4 4 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
4 4 3 1 SCOP 88723 PIN domain-like
4 4 3 1 SCOP 52954 Class II aaRS ABD-related
4 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 2 2 0 SCOP 51905 FAD/NAD(P)-binding domain
3 3 2 0 SCOP 56112 Protein kinase-like (PK-like)
3 3 3 2 SCOP 51735 NAD(P)-binding Rossmann-fold domains
3 3 1 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
3 3 2 1 SCOP 53137 Translational machinery components
3 3 3 1 SCOP 55120 Pseudouridine synthase
3 3 2 1 SCOP 53187 Zn-dependent exopeptidases
3 3 2 0 SCOP 50182 Sm-like ribonucleoproteins
3 3 2 1 SCOP 55315 L30e-like
3 3 1 0 SCOP 63393 RNA polymerase subunits
3 3 3 1 SCOP 55931 Glutamine synthetase/guanido kinase
3 3 3 0 SCOP 81301 Nucleotidyltransferase
3 3 3 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
3 3 2 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
3 2 2 0 SCOP 54980 EF-G C-terminal domain-like
2 2 1 0 SCOP 56059 Glutathione synthetase ATP-binding domain-like
2 2 1 0 SCOP 53448 Nucleotide-diphospho-sugar transferases
2 2 1 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 0 SCOP 54197 HIT-like
2 2 1 1 SCOP 55282 RL5-like
2 2 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
2 2 1 0 SCOP 53067 Actin-like ATPase domain
2 2 2 2 SCOP 53098 Ribonuclease H-like
2 2 2 0 SCOP 55174 Alpha-L RNA-binding motif
2 2 2 0 SCOP 52980 Restriction endonuclease-like
2 2 1 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 0 SCOP 54862 4Fe-4S ferredoxins
2 2 1 1 SCOP 48150 DNA-glycosylase
2 2 1 0 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
2 2 1 1 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
2 2 1 0 SCOP 47113 Histone-fold
2 2 2 1 SCOP 56672 DNA/RNA polymerases
2 2 1 0 SCOP 46579 Prefoldin
2 2 2 0 SCOP 49899 Concanavalin A-like lectins/glucanases
2 2 2 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
2 2 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 2 1 0 SCOP 52768 Arginase/deacetylase
2 2 2 0 SCOP 54631 CBS-domain pair
2 1 1 0 SCOP 46955 Putative DNA-binding domain
2 2 2 0 SCOP 54909 Dimeric alpha+beta barrel
2 2 2 0 SCOP 47413 lambda repressor-like DNA-binding domains
2 2 2 0 SCOP 57783 Zinc beta-ribbon
2 2 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
2 1 1 0 SCOP 63411 LuxS/MPP-like metallohydrolase
2 2 1 0 SCOP 50346 PRC-barrel domain
2 2 2 0 SCOP 143437 THUMP domain-like
2 2 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 1 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
2 1 1 0 SCOP 55979 DNA clamp
2 2 1 1 SCOP 55307 Tubulin C-terminal domain-like
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 1 1 0 SCOP 47954 Cyclin-like
2 1 1 0 SCOP 55945 TATA-box binding protein-like
2 2 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 81271 TGS-like
2 2 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 0 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 1 SCOP 51556 Metallo-dependent hydrolases
1 1 1 0 SCOP 56731 DNA primase core
1 1 1 0 SCOP 52317 Class I glutamine amidotransferase-like
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 56784 HAD-like
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 0 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 1 SCOP 55920 Creatinase/aminopeptidase
1 1 1 0 SCOP 46946 S13-like H2TH domain
1 1 1 0 SCOP 64182 DHH phosphoesterases
1 1 1 0 SCOP 103473 MFS general substrate transporter
1 1 1 0 SCOP 75217 alpha/beta knot
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 0 SCOP 53850 Periplasmic binding protein-like II
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 52096 ClpP/crotonase
1 1 1 1 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 49764 HSP20-like chaperones
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 0 SCOP 52042 Ribosomal protein L32e
1 1 1 1 SCOP 109604 HD-domain/PDEase-like
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 0 SCOP 54534 FKBP-like
1 1 1 0 SCOP 53649 Alkaline phosphatase-like
1 1 1 0 SCOP 111278 SSo0622-like
1 1 1 0 SCOP 49785 Galactose-binding domain-like
1 1 1 0 SCOP 55144 LigT-like
1 1 1 0 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 57997 Tropomyosin
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
1 1 1 0 SCOP 49777 PEBP-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 0 SCOP 55909 Pentein
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 101960 Stabilizer of iron transporter SufD
1 1 1 1 SCOP 111038 YjbQ-like
1 1 1 0 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
1 1 1 0 SCOP 75712 Rad50 coiled-coil Zn hook
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 50692 ADC-like
1 1 1 0 SCOP 53300 vWA-like
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 1 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 143430 TTP0101/SSO1404-like
1 1 1 0 SCOP 55021 ACT-like
1 1 1 0 SCOP 51219 TRAP-like
1 1 1 0 SCOP 53146 Nitrogenase accessory factor-like
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 47781 RuvA domain 2-like
1 1 1 0 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 82704 AlbA-like
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 0 SCOP 74784 Translin
1 1 1 1 SCOP 89124 Nop domain
1 1 1 1 SCOP 160975 AF1531-like
1 1 1 1 SCOP 49367 Superoxide reductase-like
1 1 1 0 SCOP 54984 eEF-1beta-like
1 1 1 0 SCOP 55186 ThrRS/AlaRS common domain
1 1 1 0 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 101756 Hypothetical protein YgiW
1 1 1 0 SCOP 50199 Staphylococcal nuclease
1 1 1 0 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
1 1 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 0 SCOP 52743 Subtilisin-like
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 56176 FAD-binding/transporter-associated domain-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
1 1 1 0 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 90257 Myosin rod fragments
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 63380 Riboflavin synthase domain-like
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 49299 PKD domain
1 1 1 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
1 1 1 0 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 0 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 0 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 0 SCOP 88802 Pre-PUA domain
1 1 1 1 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 54585 Cdc48 domain 2-like
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 141300 GatD N-terminal domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 55267 tRNA-intron endonuclease N-terminal domain-like

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The following superfamilies have one or more weak hits:

SCOP superfamily Collagen-binding domain
SCOP superfamily Zn-finger domain of Sec23/24
SCOP superfamily GIY-YIG endonuclease
SCOP superfamily SEA domain
SCOP superfamily SufE/NifU
SCOP superfamily Calcium ATPase, transmembrane domain M
SCOP superfamily F1F0 ATP synthase subunit B, membrane domain
SCOP superfamily DsrEFH-like
SCOP superfamily Ribosome binding protein Y (YfiA homologue)
SCOP superfamily Anti-sigma factor AsiA
SCOP superfamily RecG, N-terminal domain
SCOP superfamily SirA-like
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily ArfGap/RecO-like zinc finger
SCOP superfamily RING/U-box
SCOP superfamily Rubredoxin-like
SCOP superfamily Upper collar protein gp10 (connector protein)
SCOP superfamily Prismane protein-like
SCOP superfamily Type II DNA topoisomerase
SCOP superfamily Serpins
SCOP superfamily PheT/TilS domain
SCOP superfamily Superantigen toxins, C-terminal domain
SCOP superfamily MoaD/ThiS
SCOP superfamily Cysteine proteinases
SCOP superfamily Macro domain-like
SCOP superfamily ATP synthase (F1-ATPase), gamma subunit
SCOP superfamily Phosphohistidine domain
SCOP superfamily LexA/Signal peptidase
SCOP superfamily Urease, beta-subunit
SCOP superfamily Single hybrid motif
SCOP superfamily Trimeric LpxA-like enzymes
SCOP superfamily Pectin lyase-like
SCOP superfamily Carbohydrate-binding domain
SCOP superfamily PapD-like
SCOP superfamily Transglutaminase, two C-terminal domains
SCOP superfamily Fibronectin type III
SCOP superfamily Immunoglobulin
SCOP superfamily ARM repeat
SCOP superfamily Chondroitin AC/alginate lyase
SCOP superfamily t-snare proteins
SCOP superfamily Apolipoprotein
SCOP superfamily Homeodomain-like
SCOP superfamily RILP dimerisation region
SCOP superfamily MetI-like
SCOP superfamily NMB0513-like
SCOP superfamily YdgH-like
SCOP superfamily YorP-like
SCOP superfamily Tex N-terminal region-like
SCOP superfamily YheA/YmcA-like
SCOP superfamily GINS helical bundle-like
SCOP superfamily Bacillus cereus metalloprotein-like
SCOP superfamily YqgQ-like
SCOP superfamily PRP4-like
SCOP superfamily FdhE-like
SCOP superfamily PTPA-like
SCOP superfamily TM0693-like
SCOP superfamily BSD domain-like
SCOP superfamily Hypothetical protein MPN330
SCOP superfamily Coronavirus S2 glycoprotein
SCOP superfamily Ammonium transporter
SCOP superfamily Recombination protein RecR
SCOP superfamily Triger factor/SurA peptide-binding domain-like
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Stathmin
SCOP superfamily Flagellar export chaperone FliS

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