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Plasmodium yoelii ssp. yoelii 1 family assignments

Taxonomy
Taxonomy browser entry

Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Vinckeia); Plasmodium yoelii; Plasmodium yoelii yoelii

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 7861 total
2624 (33 %) with assignment
432 average length
22 % amino acid coverage
Domains: 3671 total
642 unique superfamilies
309 unique families
280 average length
5.7 average superfamily size
83 % formed by duplication
Domain combinations: 370 domain pairs
1303 unique architectures

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Family assignments

Domains

Proteins

SCOP link

Families
34 34 SCOP 88854 Protein kinases, catalytic subunit
33 33 SCOP 52592 G proteins
31 25 SCOP 81269 Extended AAA-ATPase domain
20 16 SCOP 81268 Tandem AAA-ATPase domain
15 15 SCOP 52641 Motor proteins
15 15 SCOP 56251 Proteasome subunits
14 8 SCOP 53068 Actin/HSP70
14 14 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
13 13 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
10 9 SCOP 52686 ABC transporter ATPase domain-like
9 9 SCOP 56310 Protein serine/threonine phosphatase
8 8 SCOP 54496 UBC-related
8 8 SCOP 50892 Cyclophilin (peptidylprolyl isomerase)
7 7 SCOP 50448 Elongation factors
6 3 SCOP 63412 MPP-like
6 6 SCOP 52670 RecA protein-like (ATPase-domain)
6 3 SCOP 54237 Ubiquitin-related
6 6 SCOP 47114 Nucleosome core histones
5 5 SCOP 74771 Clathrin adaptor core protein
5 5 SCOP 102755 Hsp90 middle domain
5 5 SCOP 52901 Glutathione peroxidase-like
5 5 SCOP 52652 Nitrogenase iron protein-like
5 5 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
5 5 SCOP 52491 Tubulin, GTPase domain
4 4 SCOP 89125 Nop domain
4 4 SCOP 50646 Pepsin-like
4 4 SCOP 64490 RNA-polymerase beta-prime
4 4 SCOP 53417 GABA-aminotransferase-like
4 3 SCOP 64485 RNA-polymerase beta
4 2 SCOP 53785 Phosphofructokinase
4 4 SCOP 56673 DNA polymerase I
4 4 SCOP 75521 Clathrin coat assembly domain
4 4 SCOP 55875 Heat shock protein 90, HSP90, N-terminal domain
4 4 SCOP 47253 Ribonucleotide reductase-like
4 4 SCOP 47502 Calmodulin-like
4 3 SCOP 56236 Class II glutamine amidotransferases
4 4 SCOP 50979 WD40-repeat
3 3 SCOP 52318 Class I glutamine amidotransferases (GAT)
3 3 SCOP 81642 Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
3 3 SCOP 54002 Papain-like
3 3 SCOP 52441 BC N-terminal domain-like
3 3 SCOP 52211 Succinyl-CoA synthetase domains
3 3 SCOP 52541 Nucleotide and nucleoside kinases
3 3 SCOP 75621 Release factor
3 3 SCOP 53351 Arginine methyltransferase
3 3 SCOP 51751 Tyrosine-dependent oxidoreductases
3 3 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
3 3 SCOP 82388 Predicted hydrolases Cof
3 3 SCOP 56067 BC ATP-binding domain-like
3 3 SCOP 55425 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
3 3 SCOP 48548 PDEase
3 3 SCOP 140991 FtsH protease domain-like
3 3 SCOP 48372 Armadillo repeat
3 3 SCOP 55308 Tubulin, C-terminal domain
3 3 SCOP 48246 Protein prenyltransferases
3 3 SCOP 56205 Hect, E3 ligase catalytic domain
3 3 SCOP 49448 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
3 1 SCOP 55974 S-adenosylmethionine synthetase
3 3 SCOP 56220 DNase I-like
3 3 SCOP 50461 Ribosomal protein L3
3 3 SCOP 55879 DNA gyrase/MutL, N-terminal domain
3 3 SCOP 50282 Cold shock DNA-binding domain-like
3 3 SCOP 55921 Creatinase/aminopeptidase
2 1 SCOP 52300 S-adenosylhomocystein hydrolase
2 2 SCOP 52778 CAT-like
2 1 SCOP 54981 EF-G/eEF-2 domains III and V
2 2 SCOP 52744 Subtilases
2 2 SCOP 81441 Cytochrome c oxidase subunit I-like
2 2 SCOP 55368 Dihydrodipicolinate reductase-like
2 1 SCOP 53902 Thiolase-related
2 2 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
2 2 SCOP 52403 N-type ATP pyrophosphatases
2 2 SCOP 55730 N-acetyl transferase, NAT
2 1 SCOP 55748 N-myristoyl transferase, NMT
2 2 SCOP 52769 Arginase-like amidino hydrolases
2 2 SCOP 63611 Pumilio repeat
2 2 SCOP 57799 Casein kinase II beta subunit
2 2 SCOP 53402 Cystathionine synthase-like
2 2 SCOP 56816 Sec1/munc18-like (SM) proteins
2 2 SCOP 56802 Acetyl-CoA synthetase-like
2 2 SCOP 53224 Aminoacid dehydrogenases
2 2 SCOP 53201 Leucine aminopeptidase, C-terminal domain
2 2 SCOP 53168 Purine and uridine phosphorylases
2 2 SCOP 56720 Type II DNA topoisomerase
2 1 SCOP 53089 Glycerol kinase
2 1 SCOP 53083 Hexokinase
2 2 SCOP 54212 Translational machinery components
2 2 SCOP 56328 Lactate & malate dehydrogenases, C-terminal domain
2 2 SCOP 54720 Fe,Mn superoxide dismutase (SOD), C-terminal domain
2 2 SCOP 56288 Glyoxalase II (hydroxyacylglutathione hydrolase)
2 2 SCOP 54827 Enolase N-terminal domain-like
2 2 SCOP 52773 Histone deacetylase, HDAC
2 2 SCOP 53660 Dimeric isocitrate & isopropylmalate dehydrogenases
2 2 SCOP 50114 C-terminal domain of ribosomal protein L2
2 2 SCOP 51622 Pyruvate kinase
2 2 SCOP 51605 Enolase
2 2 SCOP 51570 Class I aldolase
2 1 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
2 2 SCOP 51557 Adenosine/AMP deaminase
2 2 SCOP 51431 Aldo-keto reductases (NADP)
2 2 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 1 SCOP 47924 Ypt/Rab-GAP domain of gyp1p
2 2 SCOP 51396 FMN-linked oxidoreductases
2 2 SCOP 51352 Triosephosphate isomerase (TIM)
2 2 SCOP 101448 Formin homology 2 domain (FH2 domain)
2 2 SCOP 48404 Ankyrin repeat
2 2 SCOP 48446 14-3-3 protein
2 2 SCOP 102575 NOL1/NOP2/sun
2 2 SCOP 103366 Hypothetical protein PH1602
2 2 SCOP 88741 Branched-chain alpha-keto acid dehydrogenase Pyr module
2 2 SCOP 51714 tRNA-guanine transglycosylase
2 2 SCOP 82458 Trunk domain of Sec23/24
2 2 SCOP 52097 Clp protease, ClpP subunit
2 2 SCOP 88766 Branched-chain alpha-keto acid dehydrogenase PP module
2 2 SCOP 143114 NAP-like
2 2 SCOP 51848 LDH N-terminal domain-like
2 2 SCOP 143927 beta-CASP RNA-metabolising hydrolases
2 2 SCOP 82568 Ubiquitin carboxyl-terminal hydrolase, UCH
2 2 SCOP 52030 GroEL-like chaperone, apical domain
2 2 SCOP 81605 PP2C-like
2 2 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
1 1 SCOP 55932 Glutamine synthetase catalytic domain
1 1 SCOP 56323 ADC synthase
1 1 SCOP 110902 FabZ-like
1 1 SCOP 117002 Exportin HEAT-like repeat
1 1 SCOP 56361 Eukaryotic DNA topoisomerase I, catalytic core
1 1 SCOP 56691 T7 RNA polymerase
1 1 SCOP 56686 Reverse transcriptase
1 1 SCOP 103492 Preprotein translocase SecY subunit
1 1 SCOP 56426 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 SCOP 103507 Mitochondrial carrier
1 1 SCOP 159704 SepSecS-like
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 110112 Ctag/Cox11
1 1 SCOP 82767 Sedlin (SEDL)
1 1 SCOP 117019 ATP-dependent DNA ligase DNA-binding domain
1 1 SCOP 141679 MAL13P1.257-like
1 1 SCOP 55983 DNA polymerase processivity factor
1 1 SCOP 141436 SSRP1-like
1 1 SCOP 141755 PdxS-like
1 1 SCOP 159112 RNB domain-like
1 1 SCOP 56081 Succinyl-CoA synthetase, beta-chain, N-terminal domain
1 1 SCOP 140985 PTPA-like
1 1 SCOP 56092 ATP-dependent DNA ligase catalytic domain
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 140925 Duffy binding domain
1 1 SCOP 56171 Phoshoinositide 3-kinase (PI3K), catalytic domain
1 1 SCOP 143642 LplA-like
1 1 SCOP 56108 Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
1 1 SCOP 118204 Vacuolar ATP synthase subunit C
1 1 SCOP 159638 Prp8 beta-finger domain-like
1 1 SCOP 118076 TRAPP components
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 103264 Chorismate synthase, AroC
1 1 SCOP 56742 Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
1 1 SCOP 88760 TK-like PP module
1 1 SCOP 81589 Poly(A) polymerase, PAP, N-terminal domain
1 1 SCOP 75305 Amidase signature (AS) enzymes
1 1 SCOP 69766 IpsF-like
1 1 SCOP 69746 Pseudouridine synthase II TruB
1 1 SCOP 69557 Spermidine synthase
1 1 SCOP 69337 Alpha subunit of glutamate synthase, C-terminal domain
1 1 SCOP 88784 rRNA adenine dimethylase-like
1 1 SCOP 88735 TK-like Pyr module
1 1 SCOP 82911 Apical membrane antigen 1
1 1 SCOP 81656 Meta-cation ATPase, catalytic domain P
1 1 SCOP 81664 Calcium ATPase, transmembrane domain M
1 1 SCOP 81380 Skp1 dimerisation domain-like
1 1 SCOP 81812 Helical domain of Sec23/24
1 1 SCOP 81838 BEACH domain
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 82755 C-terminal, gelsolin-like domain of Sec23/24
1 1 SCOP 68924 PEP carboxykinase N-terminal domain
1 1 SCOP 64388 Phoshatidylinositol transfer protein, PITP
1 1 SCOP 111233 YfcE-like
1 1 SCOP 63571 PABC (PABP) domain
1 1 SCOP 57851 RING finger domain, C3HC4
1 1 SCOP 102887 Coproporphyrinogen III oxidase
1 1 SCOP 56895 Aquaporin-like
1 1 SCOP 102928 NifU/IscU domain
1 1 SCOP 103026 Aminomethyltransferase folate-binding domain
1 1 SCOP 103197 Roadblock/LC7 domain
1 1 SCOP 102492 CAF1-like ribonuclease
1 1 SCOP 63873 Translationally controlled tumor protein TCTP (histamine-releasing factor)
1 1 SCOP 89818 Mago nashi protein
1 1 SCOP 64422 Inositol polyphosphate 5-phosphatase (IPP5)
1 1 SCOP 89943 eEF1-gamma domain
1 1 SCOP 100908 MIF4G domain-like
1 1 SCOP 64154 YjeF N-terminal domain-like
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 63984 Sir2 family of transcriptional regulators
1 1 SCOP 63917 Dihydroorotase
1 1 SCOP 81630 Poly(A) polymerase, PAP, middle domain
1 1 SCOP 52034 Group II chaperonin (CCT, TRIC), apical domain
1 1 SCOP 51632 Phosphoenolpyruvate carboxylase
1 1 SCOP 51594 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
1 1 SCOP 51521 Family 1 of glycosyl hydrolase
1 1 SCOP 51420 Alanine racemase-like, N-terminal domain
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51375 Decarboxylase
1 1 SCOP 51372 D-ribulose-5-phosphate 3-epimerase
1 1 SCOP 51284 dUTPase-like
1 1 SCOP 51247 BC C-terminal domain-like
1 1 SCOP 51231 Biotinyl/lipoyl-carrier proteins and domains
1 1 SCOP 50999 Quinoprotein alcohol dehydrogenase-like
1 1 SCOP 50990 Clathrin heavy-chain terminal domain
1 1 SCOP 51659 Endonuclease IV
1 1 SCOP 51691 NadC C-terminal domain-like
1 1 SCOP 52022 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 SCOP 52017 LeuD-like
1 1 SCOP 52002 R1 subunit of ribonucleotide reductase, C-terminal domain
1 1 SCOP 51943 FAD/NAD-linked reductases, N-terminal and central domains
1 1 SCOP 51934 Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
1 1 SCOP 51931 GDI-like N domain
1 1 SCOP 51868 6-phosphogluconate dehydrogenase-like, N-terminal domain
1 1 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
1 1 SCOP 46549 Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
1 1 SCOP 51727 Uroporphyrinogen decarboxylase, UROD
1 1 SCOP 51718 Dihydropteroate synthetase
1 1 SCOP 51696 Mammalian PLC
1 1 SCOP 50986 Regulator of chromosome condensation RCC1
1 1 SCOP 50764 Ran-binding domain
1 1 SCOP 50719 Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 47808 5' to 3' exonuclease, C-terminal subdomain
1 1 SCOP 47617 Glutathione S-transferase (GST), C-terminal domain
1 1 SCOP 47577 Calponin-homology domain, CH-domain
1 1 SCOP 47447 Signal peptide-binding domain
1 1 SCOP 47371 Bromodomain
1 1 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
1 1 SCOP 47217 Proteasome activator
1 1 SCOP 47028 Acyl-CoA binding protein
1 1 SCOP 46978 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 SCOP 46676 Cytochrome bc1 domain
1 1 SCOP 46627 monodomain cytochrome c
1 1 SCOP 48180 Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
1 1 SCOP 48243 Terpene synthases
1 1 SCOP 50678 ValRS/IleRS/LeuRS editing domain
1 1 SCOP 50325 Inorganic pyrophosphatase
1 1 SCOP 50307 DNA ligase/mRNA capping enzyme postcatalytic domain
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50183 Sm motif of small nuclear ribonucleoproteins, SNRNP
1 1 SCOP 50023 Rieske iron-sulfur protein (ISP)
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 48558 L-aspartase/fumarase
1 1 SCOP 48453 Tetratricopeptide repeat (TPR)
1 1 SCOP 48393 Clathrin heavy-chain linker domain
1 1 SCOP 48390 Clathrin heavy chain proximal leg segment
1 1 SCOP 48257 Citrate synthase
1 1 SCOP 46610 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 SCOP 52142 Uracil-DNA glycosylase
1 1 SCOP 55910 Ribosome anti-association factor eIF6 (aIF6)
1 1 SCOP 54687 Ribosomal protein L10e
1 1 SCOP 54649 DLC
1 1 SCOP 54586 Cdc48 domain 2-like
1 1 SCOP 54535 FKBP immunophilin/proline isomerase
1 1 SCOP 54293 2Fe-2S ferredoxin-related
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54198 HIT (HINT, histidine triad) family of protein kinase-interacting proteins
1 1 SCOP 54193 L15e
1 1 SCOP 54054 Adenain-like
1 1 SCOP 52895 spliceosomal protein U5-15Kd
1 1 SCOP 53851 Phosphate binding protein-like
1 1 SCOP 53796 PEP carboxykinase C-terminal domain
1 1 SCOP 54748 Ribosomal L11/L12e N-terminal domain
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 55832 Thymidylate synthase/dCMP hydroxymethylase
1 1 SCOP 55621 GTP cyclohydrolase I
1 1 SCOP 55505 Neurolysin-like
1 1 SCOP 55482 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 SCOP 55376 Glucose 6-phosphate dehydrogenase-like
1 1 SCOP 55348 GAPDH-like
1 1 SCOP 55323 ERF1/Dom34 C-terminal domain-like
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55160 eIF1-like
1 1 SCOP 54929 Canonical RBD
1 1 SCOP 54920 Nucleoside diphosphate kinase, NDK
1 1 SCOP 53791 Tetrapyrrole methylase
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53733 Aconitase iron-sulfur domain
1 1 SCOP 52976 Maf-like
1 1 SCOP 52973 ITPase (Ham1)
1 1 SCOP 52955 Anticodon-binding domain of Class II aaRS
1 1 SCOP 52944 ATP synthase (F1-ATPase), gamma subunit
1 1 SCOP 52926 Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
1 1 SCOP 52862 Glutathione S-transferase (GST), N-terminal domain
1 1 SCOP 52834 Thioltransferase
1 1 SCOP 52800 Dual specificity phosphatase-like
1 1 SCOP 52484 Transhydrogenase domain III (dIII)
1 1 SCOP 52468 Deoxyhypusine synthase, DHS
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 53045 5' to 3' exonuclease catalytic domain
1 1 SCOP 53099 Ribonuclease H
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53698 double-SIS domain
1 1 SCOP 53672 Aspartate/ornithine carbamoyltransferase
1 1 SCOP 53629 Folylpolyglutamate synthetase
1 1 SCOP 53620 Thiamin biosynthesis kinases
1 1 SCOP 53598 Dihydrofolate reductases
1 1 SCOP 53461 UDP-glucose pyrophosphorylase
1 1 SCOP 53384 AAT-like
1 1 SCOP 53342 Fibrillarin homologue
1 1 SCOP 53296 Phosphoribosylpyrophosphate synthetase-like
1 1 SCOP 53272 Phosphoribosyltransferases (PRTases)
1 1 SCOP 53143 ERF1/Dom34 middle domain-like
1 1 SCOP 52152 FabD-like

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The following families have one or more weak hits:

SCOP family Zinc hairpin stack
SCOP family CHY zinc finger
SCOP family Zf-UBP
SCOP family Ribosomal protein S27a
SCOP family Cation efflux protein transmembrane domain-like
SCOP family SNF-like
SCOP family Diacylglycerol kinase-like
SCOP family Taf5 N-terminal domain-like
SCOP family V-type ATPase subunit E
SCOP family Minimal THUMP
SCOP family RplX-like
SCOP family Ribosomal protein L10-like
SCOP family Autophagin-like
SCOP family TRM1-like
SCOP family Fumble-like
SCOP family EMG1/NEP1-like
SCOP family SRA domain-like
SCOP family ECR1 N-terminal domain-like
SCOP family Dom34/Pelota N-terminal domain-like
SCOP family Trm112p-like
SCOP family Sec63 C-terminal domain-like
SCOP family HAT/Suf repeat
SCOP family LanC-like
SCOP family Sec63 N-terminal domain
SCOP family MgsA/YrvN C-terminal domain-like
SCOP family PSF2 C-terminal domain-like
SCOP family Rps19E-like
SCOP family PRP4-like
SCOP family Sec2 N-terminal region
SCOP family CSL zinc finger
SCOP family Nucleolar RNA-binding protein Nop10-like
SCOP family NOB1 zinc finger-like
SCOP family Tim10/DDP
SCOP family Rhomboid-like
SCOP family Magnesium transport protein CorA, transmembrane region
SCOP family Oxysterol-binding protein
SCOP family RNase Z-like
SCOP family Sphingomyelin phosphodiesterase-like
SCOP family ERH-like
SCOP family GatB/GatE catalytic domain-like
SCOP family Ribosomal protein L28
SCOP family DUSP, domain in ubiquitin-specific proteases
SCOP family mRNA decapping enzyme-like
SCOP family LFTR-like
SCOP family GAS2 domain
SCOP family PUG domain
SCOP family VC0467-like
SCOP family AMMECR1-like
SCOP family SP1160 C-terminal domain-like
SCOP family Ribosomal protein L35p
SCOP family TIM44-like
SCOP family Methyltransferase 10 domain
SCOP family TrmB-like
SCOP family hypothetical RNA methyltransferase
SCOP family Met-10+ protein-like
SCOP family YhhF-like
SCOP family Brix domain
SCOP family Lactophage receptor-binding protein N-terminal domain
SCOP family Pentapeptide repeats
SCOP family TIP49 domain
SCOP family LSM14 N-terminal domain-like
SCOP family Ribosomal protein L19
SCOP family Ribosomal protein L21p
SCOP family ICP-like
SCOP family HspBP1 domain
SCOP family MED7 hinge region
SCOP family RNA editing terminal uridyl transferase 2, RET2, domain 2
SCOP family Hef domain-like
SCOP family EB1 dimerisation domain-like
SCOP family Dcp2 box A domain
SCOP family p25-alpha
SCOP family EDF1-like
SCOP family BSD domain
SCOP family IscX-like
SCOP family Siah interacting protein N terminal domain-like
SCOP family ISY1 N-terminal domain-like
SCOP family Expressed protein At2g23090/F21P24.15
SCOP family Putative zinc binding domain
SCOP family TrmE formyl-THF-binding domain
SCOP family PaaD-like
SCOP family NifU C-terminal domain-like
SCOP family Band 7/SPFH domain
SCOP family Ribosomal protein L16p
SCOP family C9orf74 homolog
SCOP family Formaldehyde-activating enzyme, FAE
SCOP family Ribosomal protein S24e
SCOP family Acylamino-acid-releasing enzyme, C-terminal donain
SCOP family FumA C-terminal domain-like
SCOP family LamB/YcsF-like
SCOP family Kelch motif
SCOP family Ribosomal protein L35ae
SCOP family Hypothetical protein AT3g04780/F7O18 27
SCOP family Nuclear movement domain
SCOP family COX17-like
SCOP family ProC C-terminal domain-like
SCOP family EspA chaperone CesA
SCOP family TrmE connector domain
SCOP family MIT domain
SCOP family Rps17e-like
SCOP family eIF2alpha middle domain-like
SCOP family RpoE2-like
SCOP family HkH motif-containing C2H2 finger
SCOP family NAD kinase-like
SCOP family AF1104-like
SCOP family RIO1-like kinases
SCOP family Inositol polyphosphate kinase (IPK)
SCOP family Glutamate-cysteine ligase family 2 (GCS2)
SCOP family Hypothetical protein yfbM
SCOP family eIF-2-alpha, C-terminal domain
SCOP family HSP90 C-terminal domain
SCOP family Hypothetical protein AF0491, N-terminal domain
SCOP family Glycosyl transferases group 1
SCOP family IF2B-like
SCOP family NLI interacting factor-like phosphatase
SCOP family Ribosomal L27 protein
SCOP family ERO1-like
SCOP family Glycolipid transfer protein, GLTP
SCOP family VPS9 domain
SCOP family Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain
SCOP family YgfY-like
SCOP family Surp module (SWAP domain)
SCOP family Alpha-hemoglobin stabilizing protein AHSP
SCOP family Hypothetical protein AF0491, middle domain
SCOP family DEK C-terminal domain
SCOP family V-type ATP synthase subunit C
SCOP family Preprotein translocase SecE subunit
SCOP family Predicted metal-dependent hydrolase
SCOP family Activator of Hsp90 ATPase, Aha1
SCOP family OmpA-like
SCOP family AlaX-like
SCOP family tRNA pseudouridine synthase TruD
SCOP family Smg-4/UPF3
SCOP family NSFL1 (p97 ATPase) cofactor p47, SEP domain
SCOP family ATP-dependent protease Lon (La), catalytic domain
SCOP family CoaB-like
SCOP family LmbE-like
SCOP family (Uracil-5-)-methyltransferase
SCOP family Leucine carboxy methyltransferase Ppm1
SCOP family Peptidyl-tRNA hydrolase II
SCOP family MoCo carrier protein-like
SCOP family DNA polymerase III chi subunit
SCOP family NagD-like
SCOP family Stabilizer of iron transporter SufD
SCOP family Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
SCOP family GyrA/ParC C-terminal domain-like
SCOP family Aminopeptidase/glucanase lid domain
SCOP family Aminomethyltransferase beta-barrel domain
SCOP family RNase P subunit p29-like
SCOP family Allantoicase repeat
SCOP family GS domain
SCOP family ASF1-like
SCOP family Coatomer appendage domain
SCOP family HD domain
SCOP family XPC-binding domain
SCOP family PWI domain
SCOP family Translation initiation factor 2 beta, aIF2beta, N-terminal domain
SCOP family Isochorismatase-like hydrolases
SCOP family Heat shock protein 70kD (HSP70), C-terminal subdomain
SCOP family Lesion bypass DNA polymerase (Y-family), catalytic domain
SCOP family Myosin rod fragments
SCOP family CCCH zinc finger
SCOP family U-box
SCOP family Ribosomal protein S27e
SCOP family Ran binding protein zinc finger-like
SCOP family ABC transporter transmembrane region
SCOP family Capz beta-1 subunit
SCOP family Primase fragment of primase-helicase protein
SCOP family Choline kinase
SCOP family SRP alpha N-terminal domain-like
SCOP family Ribosome-binding factor A, RbfA
SCOP family Doublecortin (DC)
SCOP family Deoxycytidylate deaminase-like
SCOP family Ubiquitin activating enzymes (UBA)
SCOP family Patatin
SCOP family Macro domain
SCOP family XPF/Rad1/Mus81 nuclease
SCOP family YggJ C-terminal domain-like
SCOP family PIN domain
SCOP family Glycerophosphoryl diester phosphodiesterase
SCOP family HesB-like domain
SCOP family DNA replication initiator (cdc21/cdc54) N-terminal domain
SCOP family N-terminal, heterodimerisation domain of RBP7 (RpoE)
SCOP family C5 cytosine-specific DNA methylase, DCM
SCOP family Pyruvate oxidase and decarboxylase PP module
SCOP family Pyruvate oxidase and decarboxylase Pyr module
SCOP family PUA domain
SCOP family Eukaryotic ODC-like
SCOP family Zn-finger domain of Sec23/24
SCOP family TSP-1 type 1 repeat
SCOP family Multidrug efflux transporter AcrB transmembrane domain
SCOP family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
SCOP family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
SCOP family Poly A polymerase head domain-like
SCOP family BolA-like
SCOP family SufE-like
SCOP family PfkB-like kinase
SCOP family MraW-like putative methyltransferases
SCOP family phosphatase domain of polynucleotide kinase
SCOP family Homocysteine S-methyltransferase
SCOP family TatD Mg-dependent DNase-like
SCOP family Viral histone H3 Lysine 27 Methyltransferase
SCOP family Histone lysine methyltransferases
SCOP family Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
SCOP family ATP-dependent riboflavin kinase-like
SCOP family Mechanosensitive channel protein MscS (YggB), middle domain
SCOP family beta-sandwich domain of Sec23/24
SCOP family Double Clp-N motif
SCOP family HCP-like
SCOP family Poly A polymerase C-terminal region-like
SCOP family Putative methyltransferase TM0872, insert domain
SCOP family FF domain
SCOP family Metal cation-transporting ATPase, ATP-binding domain N
SCOP family Calcium ATPase, transduction domain A
SCOP family a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP family Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP family 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP family Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP family ISP transmembrane anchor
SCOP family Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
SCOP family Cytochrome c oxidase subunit II-like, transmembrane region
SCOP family Cytochrome c oxidase subunit III-like
SCOP family F1F0 ATP synthase subunit C
SCOP family Voltage-gated potassium channels
SCOP family Filamin repeat (rod domain)
SCOP family Zinc-binding domain of translation initiation factor 2 beta
SCOP family Cullin homology domain
SCOP family Smc hinge domain
SCOP family Pseudouridine synthase RsuA/RluD
SCOP family D-ribose-5-phosphate isomerase (RpiA), lid domain
SCOP family Plant transcriptional regulator PBF-2
SCOP family YjeF C-terminal domain-like
SCOP family Hypothetical protein MTH1 (MT0001), dimerisation domain
SCOP family SpoU-like RNA 2'-O ribose methyltransferase
SCOP family D-ribose-5-phosphate isomerase (RpiA), catalytic domain
SCOP family Dipeptidyl peptidase I (cathepsin C), exclusion domain
SCOP family Cap-Gly domain
SCOP family gamma-adaptin C-terminal appendage domain-like
SCOP family Cullin repeat
SCOP family Ribosomal protein L20
SCOP family SCF ubiquitin ligase complex WHB domain
SCOP family C-terminal domain of PLC-beta
SCOP family LCCL domain
SCOP family MTH1598-like
SCOP family Ribosome binding protein Y (YfiA homologue)
SCOP family SRP19
SCOP family Molybdenum cofactor biosynthesis protein MoeB
SCOP family DTD-like
SCOP family UDP-galactopyranose mutase, N-terminal domain
SCOP family APC10-like
SCOP family 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
SCOP family RNA polymerase II subunit RBP4 (RpoF)
SCOP family FAD-dependent thiol oxidase
SCOP family SAP domain
SCOP family Cytidylytransferase
SCOP family C-terminal domain of ProRS
SCOP family DNA double-strand break repair nuclease
SCOP family Holo-(acyl carrier protein) synthase ACPS
SCOP family Cell-division protein ZipA, C-terminal domain
SCOP family Synatpobrevin N-terminal domain
SCOP family Leukotriene A4 hydrolase catalytic domain
SCOP family RBP11/RpoL
SCOP family Splicing factor U2AF subunits
SCOP family PX domain
SCOP family Prokaryotic ribosomal protein L17
SCOP family tRNA(1-methyladenosine) methyltransferase-like
SCOP family Undecaprenyl diphosphate synthase
SCOP family Thiamin pyrophosphokinase, catalytic domain
SCOP family Thiamin pyrophosphokinase, substrate-binding domain
SCOP family SGL-like
SCOP family Tudor domain
SCOP family Leukotriene A4 hydrolase N-terminal domain
SCOP family Prokaryotic PEBP-like proteins
SCOP family Regulatory subunit H of the V-type ATPase
SCOP family Ferredoxin reductase FAD-binding domain-like
SCOP family Apolipoprotein A-I
SCOP family Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP family SNARE fusion complex
SCOP family Coiled-coil domain of nucleotide exchange factor GrpE
SCOP family Tropomyosin
SCOP family DnaJ/Hsp40 cysteine-rich domain
SCOP family Inhibitor of apoptosis (IAP) repeat
SCOP family PHD domain
SCOP family FYVE, a phosphatidylinositol-3-phosphate binding domain
SCOP family TFIIH p44 subunit cysteine-rich domain
SCOP family Pyk2-associated protein beta ARF-GAP domain
SCOP family B-box zinc-binding domain
SCOP family Ribosomal protein L37e
SCOP family Ribosomal protein L37ae
SCOP family Rubredoxin
SCOP family Transcriptional factor domain
SCOP family Microbial and mitochondrial ADK, insert "zinc finger" domain
SCOP family Retrovirus zinc finger-like domains
SCOP family Ribosomal protein S14
SCOP family Ribosomal protein L24e
SCOP family Classic zinc finger, C2H2
SCOP family TNF receptor-like
SCOP family Complement control module/SCR domain
SCOP family Plant proteinase inhibitors
SCOP family Kringle modules
SCOP family Merozoite surface protein 1 (MSP-1)
SCOP family Growth factor receptor domain
SCOP family Anthrax protective antigen
SCOP family Ribosomal protein L1
SCOP family D-aminoacid aminotransferase-like PLP-dependent enzymes
SCOP family PriA-like
SCOP family DNA topoisomerase IV, alpha subunit
SCOP family Prokaryotic type I DNA topoisomerase
SCOP family Insert subdomain of RNA polymerase alpha subunit
SCOP family Fibrinogen C-terminal domain-like
SCOP family Scavenger receptor cysteine-rich (SRCR) domain
SCOP family Lambda integrase-like, catalytic core
SCOP family Purple acid phosphatase-like
SCOP family S-adenosylmethionine decarboxylase
SCOP family mRNA capping enzyme
SCOP family Eukaryotic glutathione synthetase ATP-binding domain
SCOP family Ribosomal protein L6
SCOP family PurM C-terminal domain-like
SCOP family The spindle assembly checkpoint protein mad2
SCOP family Nitrite and sulphite reductase 4Fe-4S domain-like
SCOP family Phosphoglucomutase, C-terminal domain
SCOP family DNA repair glycosylase, N-terminal domain
SCOP family TATA-box binding protein (TBP), C-terminal domain
SCOP family Ornithine decarboxylase C-terminal domain
SCOP family Histidine kinase
SCOP family Cytochrome b5
SCOP family YbaK/ProRS associated domain
SCOP family YrdC-like
SCOP family MutT-like
SCOP family GAF domain
SCOP family Profilin (actin-binding protein)
SCOP family Cofilin-like
SCOP family Ran-binding protein mog1p
SCOP family Clathrin adaptor appendage, alpha and beta chain-specific domain
SCOP family Biotin holoenzyme synthetase
SCOP family CytB endotoxin-like
SCOP family Ribonuclease PH domain 2-like
SCOP family Ribosomal protein L9 N-domain
SCOP family Cell cycle regulatory proteins
SCOP family NADH oxidase/flavin reductase
SCOP family Translation initiation factor eIF4e
SCOP family MIF-related
SCOP family PurM N-terminal domain-like
SCOP family L30e/L7ae ribosomal proteins
SCOP family RPB6
SCOP family RPB5
SCOP family GYF domain
SCOP family DNA repair protein MutS, domain I
SCOP family RNA polymerase alpha subunit dimerisation domain
SCOP family Enolpyruvate transferase, EPT
SCOP family RNA 3'-terminal phosphate cyclase, RPTC
SCOP family Translation initiation factor IF3, C-terminal domain
SCOP family Ribosome recycling factor, RRF
SCOP family Ribosomal protein S4
SCOP family mRNA triphosphatase CET1
SCOP family Ribosomal protein L30p/L7e
SCOP family Pseudouridine synthase I TruA
SCOP family 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
SCOP family Adenylyl and guanylyl cyclase catalytic domain
SCOP family Poly(A) polymerase, PAP, C-terminal domain
SCOP family Ribosomal protein S10
SCOP family Ribosomal protein S6
SCOP family Anticodon-binding domain of PheRS
SCOP family eEF-1beta-like
SCOP family Group II chaperonin (CCT, TRIC), intermediate domain
SCOP family GroEL-like chaperone, intermediate domain
SCOP family Ribosomal protein L22
SCOP family Eukaryotic type KH-domain (KH-domain type I)
SCOP family Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
SCOP family Ribosomal S5 protein, N-terminal domain
SCOP family Signal recognition particle alu RNA binding heterodimer, SRP9/14
SCOP family Ribosomal protein L7/12, C-terminal domain
SCOP family Elongation factor Ts (EF-Ts), dimerisation domain
SCOP family Tetramerization domain of potassium channels
SCOP family BTB/POZ domain
SCOP family NadC N-terminal domain-like
SCOP family CBS-domain pair
SCOP family Glyoxalase I (lactoylglutathione lyase)
SCOP family Ribosomal protein L31e
SCOP family Ribosomal protein S19
SCOP family Ribosomal protein S16
SCOP family Mitochondrial glycoprotein MAM33-like
SCOP family Transcriptional factor tubby, C-terminal domain
SCOP family NTF2-like
SCOP family L-aminoacid/polyamine oxidase
SCOP family Glutamine synthetase, N-terminal domain
SCOP family 2Fe-2S ferredoxin domains from multidomain proteins
SCOP family GABARAP-like
SCOP family UBX domain
SCOP family GHMP Kinase, N-terminal domain
SCOP family Ribonuclease PH domain 1-like
SCOP family L23p
SCOP family Chromo domain
SCOP family Interleukin 8-like chemokines
SCOP family Ubiquitin carboxyl-terminal hydrolase UCH-L
SCOP family Calpain large subunit, catalytic domain (domain II)
SCOP family Fe-only hydrogenase
SCOP family TroA-like
SCOP family Ferrochelatase
SCOP family Phosphoglucomutase, first 3 domains
SCOP family Fungal lipases
SCOP family Gastric lipase
SCOP family Ornithine decarboxylase major domain
SCOP family Protein-L-isoaspartyl O-methyltransferase
SCOP family RNA methyltransferase FtsJ
SCOP family Formyltransferase
SCOP family Integrin A (or I) domain
SCOP family Cofactor-dependent phosphoglycerate mutase
SCOP family Tetrahydrofolate dehydrogenase/cyclohydrolase
SCOP family Bacterial dinuclear zinc exopeptidases
SCOP family Ribosomal protein L18 and S11
SCOP family DnaQ-like 3'-5' exonuclease
SCOP family Retroviral integrase, catalytic domain
SCOP family Creatinase/prolidase N-terminal domain
SCOP family Eukaryotic RPB5 N-terminal domain
SCOP family tRNA-intron endonuclease catalytic domain-like
SCOP family Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
SCOP family Pyruvate kinase, C-terminal domain
SCOP family Transketolase C-terminal domain-like
SCOP family Phosducin
SCOP family PDI-like
SCOP family Multidomain sulfurtransferase (rhodanese)
SCOP family NagB-like
SCOP family Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
SCOP family Adenylyltransferase
SCOP family Cytidylyltransferase
SCOP family NADPH-cytochrome p450 reductase-like
SCOP family Reductases
SCOP family DJ-1/PfpI
SCOP family L-alanine dehydrogenase-like
SCOP family Cytochrome p450 reductase N-terminal domain-like
SCOP family CheY-related
SCOP family Ribosomal protein L13
SCOP family Initiation factor IF2/eIF5b, domain 3
SCOP family DNA ligase
SCOP family Crotonase-like
SCOP family CRAL/TRIO domain
SCOP family Ribosomal proteins L15p and L18e
SCOP family U2A'-like
SCOP family Internalin LRR domain
SCOP family Ribosomal protein L32e
SCOP family N-terminal domain of adrenodoxin reductase-like
SCOP family FAD-linked reductases, N-terminal domain
SCOP family CoA-binding domain
SCOP family Type II chitinase
SCOP family Tryptophan biosynthesis enzymes
SCOP family Epsilon subunit of F1F0-ATP synthase N-terminal domain
SCOP family cAMP-binding domain
SCOP family Type I phosphomannose isomerase
SCOP family Insect cysteine-rich antifreeze protein
SCOP family Serralysin-like metalloprotease, C-terminal domain
SCOP family Carbonic anhydrase
SCOP family Head domain of nucleotide exchange factor GrpE
SCOP family WW domain
SCOP family Rap30/74 interaction domains
SCOP family Pyruvate kinase beta-barrel domain
SCOP family Pleckstrin-homology domain (PH domain)
SCOP family Ribosomal protein L25-like
SCOP family Cdc48 N-terminal domain-like
SCOP family N-terminal domain of alpha and beta subunits of F1 ATP synthase
SCOP family Prokaryotic proteases
SCOP family 3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
SCOP family PNP-oxidase like
SCOP family NADPH-cytochrome p450 reductase FAD-binding domain-like
SCOP family Ricin B-like
SCOP family RNA polymerase subunit RBP8
SCOP family Myf domain
SCOP family Single strand DNA-binding domain, SSB
SCOP family Anticodon-binding domain
SCOP family Staphylococcal nuclease
SCOP family Alcohol dehydrogenase-like, N-terminal domain
SCOP family GroES
SCOP family eIF5a N-terminal domain-like
SCOP family Ribosomal proteins L24p and L21e
SCOP family Myosin S1 fragment, N-terminal domain
SCOP family Baculovirus p35 protein
SCOP family FHA domain
SCOP family Phosphatidylethanolamine binding protein
SCOP family Co-chaperone p23-like
SCOP family Calpain large subunit, middle domain (domain III)
SCOP family MATH domain
SCOP family PLC-like (P variant)
SCOP family Periplasmic domain of cytochrome c oxidase subunit II
SCOP family HSP40/DnaJ peptide-binding domain
SCOP family Cellulose-binding domain family II
SCOP family MSP-like
SCOP family Alpha-adaptin ear subdomain-like
SCOP family Group II chaperonin (CCT, TRIC), ATPase domain
SCOP family Isoprenyl diphosphate synthases
SCOP family P1 nuclease
SCOP family gene 59 helicase assembly protein
SCOP family ENTH domain
SCOP family Protein prenylyltransferase
SCOP family Sec7 domain
SCOP family Phoshoinositide 3-kinase (PI3K) helical domain
SCOP family HEAT repeat
SCOP family BCR-homology GTPase activation domain (BH-domain)
SCOP family DNA repair protein MutS, domain III
SCOP family Glycerol-3-phosphate dehydrogenase
SCOP family Cryptochrome/photolyase FAD-binding domain
SCOP family R1 subunit of ribonucleotide reductase, N-terminal domain
SCOP family DNA repair glycosylase, 2 C-terminal domains
SCOP family Mismatch glycosylase
SCOP family Endonuclease III
SCOP family Ribosomal protein L19 (L19e)
SCOP family Carbamoyl phosphate synthetase, large subunit connection domain
SCOP family FliG
SCOP family DNA polymerase III clamp loader subunits, C-terminal domain
SCOP family Transcription factor IIB (TFIIB), core domain
SCOP family Cyclin
SCOP family DNA polymerase beta, N-terminal domain-like
SCOP family DNA repair protein Rad51, N-terminal domain
SCOP family Cytochrome c oxidase subunit h
SCOP family Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
SCOP family t-snare proteins
SCOP family SWIB/MDM2 domain
SCOP family Eps15 homology domain (EH domain)
SCOP family Domain of the SRP/SRP receptor G-proteins
SCOP family Acyl-carrier protein (ACP)
SCOP family TBP-associated factors, TAFs
SCOP family HMG-box
SCOP family Ribosomal protein S15
SCOP family Tubulin chaperone cofactor A
SCOP family DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain
SCOP family Domains B1 and B5 of PheRS-beta, PheT
SCOP family Double-stranded DNA-binding domain
SCOP family Ribosomal protein S13
SCOP family Elongation factor TFIIS domain 2
SCOP family UBA domain
SCOP family RNA polymerase subunit RPB10
SCOP family N-terminal Zn binding domain of HIV integrase
SCOP family Ribosomal protein S18
SCOP family Ribosomal protein L11, C-terminal domain
SCOP family Methionine aminopeptidase, insert domain
SCOP family Myb/SANT domain
SCOP family Homeodomain
SCOP family Prefoldin
SCOP family Chaperone J-domain
SCOP family Ribosomal protein L29 (L29p)

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.