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Candidatus Rickettsia amblyommii str. GAT-30V superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia amblyommatis; Rickettsia amblyommatis str. GAT-30V

Downloads
Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 1390 total
777 (56 %) with assignment
259 average length
58 % amino acid coverage
Domains: 1110 total
453 unique superfamilies
231 unique families
269 average length
2.5 average superfamily size
59 % formed by duplication
Domain combinations: 214 domain pairs
497 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

107 94 44 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
24 18 15 2 SCOP 50249 Nucleic acid-binding proteins
24 24 4 1 SCOP 103473 MFS general substrate transporter
19 19 5 4 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
19 17 6 0 SCOP 48452 TPR-like
18 18 13 5 SCOP 51735 NAD(P)-binding Rossmann-fold domains
15 13 12 5 SCOP 54211 Ribosomal protein S5 domain 2-like
15 15 4 1 SCOP 109604 HD-domain/PDEase-like
13 13 3 1 SCOP 52833 Thioredoxin-like
13 7 4 1 SCOP 53067 Actin-like ATPase domain
11 11 8 1 SCOP 52374 Nucleotidylyl transferase
11 11 2 2 SCOP 53098 Ribonuclease H-like
11 11 7 2 SCOP 55681 Class II aaRS and biotin synthetases
10 10 7 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
10 10 5 0 SCOP 81301 Nucleotidyltransferase
9 9 4 2 SCOP 53474 alpha/beta-Hydrolases
9 9 3 1 SCOP 48403 Ankyrin repeat
9 8 7 2 SCOP 50447 Translation proteins
9 9 2 0 SCOP 47413 lambda repressor-like DNA-binding domains
8 8 1 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
8 8 4 1 SCOP 56601 beta-lactamase/transpeptidase-like
8 3 3 0 SCOP 141571 Pentapeptide repeat-like
7 6 2 1 SCOP 53448 Nucleotide-diphospho-sugar transferases
7 7 4 2 SCOP 51905 FAD/NAD(P)-binding domain
7 6 4 3 SCOP 52096 ClpP/crotonase
6 6 4 1 SCOP 55174 Alpha-L RNA-binding motif
6 6 2 2 SCOP 51161 Trimeric LpxA-like enzymes
6 6 2 0 SCOP 143120 YefM-like
6 6 3 1 SCOP 90123 ABC transporter transmembrane region
6 6 5 0 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 3 2 1 SCOP 54980 EF-G C-terminal domain-like
6 6 3 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
5 5 4 2 SCOP 50104 Translation proteins SH3-like domain
5 5 3 3 SCOP 55120 Pseudouridine synthase
5 5 4 0 SCOP 46785 "Winged helix" DNA-binding domain
5 5 1 3 SCOP 53383 PLP-dependent transferases
5 5 2 0 SCOP 102114 Radical SAM enzymes
5 5 2 1 SCOP 88723 PIN domain-like
5 5 2 0 SCOP 52047 RNI-like
5 5 3 1 SCOP 52151 FabD/lysophospholipase-like
5 4 4 1 SCOP 52172 CheY-like
5 5 5 0 SCOP 57783 Zinc beta-ribbon
5 5 5 1 SCOP 53955 Lysozyme-like
5 3 2 2 SCOP 53901 Thiolase-like
5 5 2 0 SCOP 103515 Autotransporter
5 5 4 1 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
5 5 4 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
4 4 4 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
4 4 4 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
4 3 3 2 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
4 4 4 2 SCOP 75217 alpha/beta knot
4 4 2 0 SCOP 52402 Adenine nucleotide alpha hydrolases-like
4 4 3 0 SCOP 46689 Homeodomain-like
4 4 2 0 SCOP 49764 HSP20-like chaperones
4 4 1 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
4 4 3 0 SCOP 54534 FKBP-like
4 3 3 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 4 2 0 SCOP 56925 OMPA-like
4 4 4 0 SCOP 47781 RuvA domain 2-like
4 3 3 0 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
4 3 2 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
4 4 4 1 SCOP 56719 Type II DNA topoisomerase
4 1 1 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
3 3 3 1 SCOP 56731 DNA primase core
3 3 1 3 SCOP 51569 Aldolase
3 2 2 0 SCOP 53271 PRTase-like
3 3 1 1 SCOP 47240 Ferritin-like
3 3 1 2 SCOP 100950 NagB/RpiA/CoA transferase-like
3 3 1 0 SCOP 47729 IHF-like DNA-binding proteins
3 3 2 1 SCOP 53850 Periplasmic binding protein-like II
3 3 2 0 SCOP 51261 Duplicated hybrid motif
3 3 2 0 SCOP 54862 4Fe-4S ferredoxins
3 3 3 0 SCOP 54292 2Fe-2S ferredoxin-like
3 3 1 1 SCOP 55811 Nudix
3 3 2 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
3 3 1 0 SCOP 48371 ARM repeat
3 3 1 0 SCOP 54427 NTF2-like
3 3 2 1 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
3 3 2 0 SCOP 52954 Class II aaRS ABD-related
3 3 2 0 SCOP 54631 CBS-domain pair
3 3 2 0 SCOP 47598 Ribbon-helix-helix
3 3 1 0 SCOP 143011 RelE-like
3 3 2 0 SCOP 51230 Single hybrid motif
3 3 3 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
3 3 3 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
3 3 2 0 SCOP 111369 HlyD-like secretion proteins
3 2 2 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
3 3 2 1 SCOP 53041 Resolvase-like
3 3 3 0 SCOP 50156 PDZ domain-like
3 1 1 0 SCOP 55979 DNA clamp
3 3 2 0 SCOP 56176 FAD-binding/transporter-associated domain-like
3 3 3 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
3 3 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
3 3 2 0 SCOP 117892 Band 7/SPFH domain
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 1 1 1 SCOP 53738 Phosphoglucomutase, first 3 domains
3 2 2 1 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 0 SCOP 52317 Class I glutamine amidotransferase-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 1 1 SCOP 56420 Peptide deformylase
2 2 2 0 SCOP 56112 Protein kinase-like (PK-like)
2 2 1 0 SCOP 56784 HAD-like
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 2 1 SCOP 46946 S13-like H2TH domain
2 2 2 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 2 2 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
2 2 2 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
2 2 1 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
2 2 2 1 SCOP 53633 Carbamate kinase-like
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
2 2 1 1 SCOP 51283 dUTPase-like
2 2 1 0 SCOP 89360 HesB-like domain
2 2 1 0 SCOP 56655 Carbohydrate phosphatase
2 2 1 1 SCOP 51395 FMN-linked oxidoreductases
2 2 1 0 SCOP 82657 BolA-like
2 2 2 2 SCOP 53187 Zn-dependent exopeptidases
2 2 2 1 SCOP 50475 FMN-binding split barrel
2 2 2 1 SCOP 46626 Cytochrome c
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 1 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
2 2 1 1 SCOP 81442 Cytochrome c oxidase subunit I-like
2 2 2 1 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 2 0 SCOP 46955 Putative DNA-binding domain
2 2 2 0 SCOP 82771 GIY-YIG endonuclease
2 2 1 1 SCOP 56349 DNA breaking-rejoining enzymes
2 2 2 1 SCOP 49503 Cupredoxins
2 2 1 0 SCOP 56954 Outer membrane efflux proteins (OEP)
2 2 1 0 SCOP 50118 Cell growth inhibitor/plasmid maintenance toxic component
2 2 1 0 SCOP 53822 Periplasmic binding protein-like I
2 2 1 1 SCOP 56219 DNase I-like
2 2 2 0 SCOP 88697 PUA domain-like
2 1 1 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
2 1 1 1 SCOP 63411 LuxS/MPP-like metallohydrolase
2 2 2 0 SCOP 50486 FMT C-terminal domain-like
2 2 1 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
2 2 2 1 SCOP 55846 N-acetylmuramoyl-L-alanine amidase-like
2 2 2 0 SCOP 46565 Chaperone J-domain
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 1 1 SCOP 52777 CoA-dependent acyltransferases
2 2 1 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
2 2 1 0 SCOP 46589 tRNA-binding arm
2 2 2 0 SCOP 48019 post-AAA+ oligomerization domain-like
2 2 2 1 SCOP 52440 PreATP-grasp domain
2 2 2 1 SCOP 52210 Succinyl-CoA synthetase domains
2 2 1 1 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
2 2 2 1 SCOP 101904 GyrA/ParC C-terminal domain-like
2 2 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 0 SCOP 63418 MurE/MurF N-terminal domain
2 2 2 1 SCOP 51984 MurCD N-terminal domain
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 2 2 0 SCOP 141259 CarD-like
2 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
2 1 1 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 81271 TGS-like
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
2 2 2 1 SCOP 81767 Pre-protein crosslinking domain of SecA
2 2 1 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 51556 Metallo-dependent hydrolases
1 1 1 0 SCOP 48013 NusB-like
1 1 1 0 SCOP 161098 MetI-like
1 1 1 1 SCOP 53927 Cytidine deaminase-like
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 53697 SIS domain
1 1 1 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 54197 HIT-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 1 SCOP 64182 DHH phosphoesterases
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 0 SCOP 89447 AbrB/MazE/MraZ-like
1 1 1 0 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 47336 ACP-like
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 52980 Restriction endonuclease-like
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 50129 GroES-like
1 1 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 48557 L-aspartase-like
1 1 1 0 SCOP 54611 SecB-like
1 1 1 0 SCOP 55821 YrdC/RibB
1 1 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
1 1 1 1 SCOP 53720 ALDH-like
1 1 1 1 SCOP 48150 DNA-glycosylase
1 1 1 1 SCOP 111337 QueA-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 56770 HydA/Nqo6-like
1 1 1 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 0 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 1 0 SCOP 56935 Porins
1 1 1 0 SCOP 50685 Barwin-like endoglucanases
1 1 1 1 SCOP 48576 Terpenoid synthases
1 1 1 1 SCOP 81452 Cytochrome c oxidase subunit III-like
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 51419 PLP-binding barrel
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1 1 1 0 SCOP 55387 Frataxin/Nqo15-like
1 1 1 0 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 50182 Sm-like ribonucleoproteins
1 1 1 0 SCOP 52949 Macro domain-like
1 1 1 1 SCOP 56801 Acetyl-CoA synthetase-like
1 1 1 0 SCOP 55315 L30e-like
1 1 1 1 SCOP 56672 DNA/RNA polymerases
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 0 SCOP 48613 Heme oxygenase-like
1 1 1 1 SCOP 102886 Coproporphyrinogen III oxidase
1 1 1 1 SCOP 51726 UROD/MetE-like
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 1 SCOP 53328 Formyltransferase
1 1 1 0 SCOP 53649 Alkaline phosphatase-like
1 1 1 0 SCOP 54001 Cysteine proteinases
1 1 1 0 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
1 1 1 0 SCOP 50630 Acid proteases
1 1 1 1 SCOP 51445 (Trans)glycosidases
1 1 1 0 SCOP 55248 PCD-like
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 56317 Carbon-nitrogen hydrolase
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 0 SCOP 48439 Protein prenylyltransferase
1 1 1 1 SCOP 52972 ITPase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 0 SCOP 49777 PEBP-like
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 55961 Bet v1-like
1 1 1 0 SCOP 69618 HemD-like
1 1 1 0 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 53800 Chelatase
1 1 1 1 SCOP 81342 Transmembrane di-heme cytochromes
1 1 1 1 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 1 SCOP 55073 Nucleotide cyclase
1 1 1 0 SCOP 141868 EAL domain-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 54909 Dimeric alpha+beta barrel
1 1 1 1 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 0 SCOP 50494 Trypsin-like serine proteases
1 1 1 1 SCOP 52016 LeuD/IlvD-like
1 1 1 0 SCOP 143100 TTHA1013/TTHA0281-like
1 1 1 0 SCOP 49482 Aromatic compound dioxygenase
1 1 1 0 SCOP 53807 "Helical backbone" metal receptor
1 1 1 1 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 1 SCOP 50022 ISP domain
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 0 SCOP 55166 Hedgehog/DD-peptidase
1 1 1 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 1 1 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 54913 GlnB-like
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 1 SCOP 56762 HydB/Nqo4-like
1 1 1 0 SCOP 116842 XseB-like
1 1 1 1 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 54786 YcfA/nrd intein domain
1 1 1 0 SCOP 159894 YgaC/TfoX-N like
1 1 1 1 SCOP 69796 Thymidylate synthase-complementing protein Thy1
1 1 1 1 SCOP 53732 Aconitase iron-sulfur domain
1 1 1 0 SCOP 50993 Peptidase/esterase 'gauge' domain
1 1 1 1 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 158442 DsbB-like
1 1 1 0 SCOP 102829 Cell division protein ZapA-like
1 1 1 0 SCOP 143456 VC0467-like
1 1 1 1 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
1 1 1 0 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
1 1 1 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
1 1 1 0 SCOP 102400 DNA polymerase III chi subunit
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 109910 YgfY-like
1 1 1 0 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 110087 DR1885-like metal-binding protein
1 1 1 1 SCOP 103088 OmpA-like
1 1 1 1 SCOP 118215 Proton glutamate symport protein
1 1 1 0 SCOP 103025 Folate-binding domain
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 1 SCOP 48295 TrpR-like
1 1 1 0 SCOP 140931 Fic-like
1 1 1 0 SCOP 55021 ACT-like
1 1 1 0 SCOP 111384 OmpH-like
1 1 1 0 SCOP 101738 SspB-like
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 140319 IscX-like
1 1 1 0 SCOP 56024 Phospholipase D/nuclease
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 50939 Sialidases
1 1 1 0 SCOP 74653 TolA/TonB C-terminal domain
1 1 1 0 SCOP 82171 DPP6 N-terminal domain-like
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 109709 KorB DNA-binding domain-like
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 1 SCOP 46548 alpha-helical ferredoxin
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 47616 GST C-terminal domain-like
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
1 1 1 0 SCOP 51246 Rudiment single hybrid motif
1 1 1 0 SCOP 82093 Heme chaperone CcmE
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 81923 Double Clp-N motif
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 1 SCOP 52922 TK C-terminal domain-like
1 1 1 0 SCOP 140376 ChaB-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 1 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 51971 Nucleotide-binding domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 158472 HAMP domain-like
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 1 SCOP 56037 PheT/TilS domain
1 1 1 0 SCOP 47090 PGBD-like
1 1 1 1 SCOP 48334 DNA repair protein MutS, domain III
1 1 1 0 SCOP 47162 Apolipoprotein
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 1 0 SCOP 161093 MgtE membrane domain-like
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 0 SCOP 50621 Alanine racemase C-terminal domain-like
1 1 1 0 SCOP 52964 TolB, N-terminal domain
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 1 SCOP 110111 Ctag/Cox11
1 1 1 1 SCOP 143968 UbiD C-terminal domain-like
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 0 SCOP 57863 ArfGap/RecO-like zinc finger
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 63380 Riboflavin synthase domain-like
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 110997 Sporulation related repeat
1 1 1 0 SCOP 49354 PapD-like
1 1 1 0 SCOP 47144 HSC20 (HSCB), C-terminal oligomerisation domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 110836 Hypothetical protein SAV1430
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 74942 YhbC-like, C-terminal domain
1 1 1 0 SCOP 48435 Bacterial muramidases
1 1 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 0 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 141986 LD-carboxypeptidase A C-terminal domain-like
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 0 SCOP 110942 HSP90 C-terminal domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 116878 TrmE connector domain
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 81496 Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 1 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily YajQ-like
SCOP superfamily Families 57/38 glycoside transferase middle domain
SCOP superfamily Polo-box domain
SCOP superfamily HCP-like
SCOP superfamily FF domain
SCOP superfamily 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP superfamily ISP transmembrane anchor
SCOP superfamily Clc chloride channel
SCOP superfamily E set domains
SCOP superfamily Rad50 coiled-coil Zn hook
SCOP superfamily Rotavirus NSP2 fragment, N-terminal domain
SCOP superfamily Cullin repeat-like
SCOP superfamily Activating enzymes of the ubiquitin-like proteins
SCOP superfamily Cell wall binding repeat
SCOP superfamily F1 ATPase inhibitor, IF1, C-terminal domain
SCOP superfamily YjeF N-terminal domain-like
SCOP superfamily Telomeric repeat binding factor (TRF) dimerisation domain
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Bacterial hemolysins
SCOP superfamily Tropomyosin
SCOP superfamily Rubredoxin-like
SCOP superfamily delta-Endotoxin (insectocide), N-terminal domain
SCOP superfamily Prim-pol domain
SCOP superfamily Methenyltetrahydromethanopterin cyclohydrolase
SCOP superfamily SCP-like
SCOP superfamily N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
SCOP superfamily Protease propeptides/inhibitors
SCOP superfamily DLC
SCOP superfamily ssDNA-binding transcriptional regulator domain
SCOP superfamily Cystatin/monellin
SCOP superfamily DNA-binding domain
SCOP superfamily Phosphofructokinase
SCOP superfamily Enolase C-terminal domain-like
SCOP superfamily Pectin lyase-like
SCOP superfamily ADC-like
SCOP superfamily FucI/AraA C-terminal domain-like
SCOP superfamily C-terminal domain of transcriptional repressors
SCOP superfamily Invasin/intimin cell-adhesion fragments
SCOP superfamily Moesin tail domain
SCOP superfamily FinO-like
SCOP superfamily Tetracyclin repressor-like, C-terminal domain
SCOP superfamily DEATH domain
SCOP superfamily Functional domain of the splicing factor Prp18
SCOP superfamily ERP29 C domain-like
SCOP superfamily Transducin (alpha subunit), insertion domain
SCOP superfamily Retroviral matrix proteins
SCOP superfamily Anaphylotoxins (complement system)
SCOP superfamily Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
SCOP superfamily STAT
SCOP superfamily Domain of poly(ADP-ribose) polymerase
SCOP superfamily HLH, helix-loop-helix DNA-binding domain
SCOP superfamily RAP domain-like
SCOP superfamily Prefoldin
SCOP superfamily CHY zinc finger-like
SCOP superfamily YehR-like
SCOP superfamily SO1590-like
SCOP superfamily RbcX-like
SCOP superfamily Ta0600-like
SCOP superfamily Bacillus cereus metalloprotein-like
SCOP superfamily Tim10-like
SCOP superfamily ORC1-binding domain
SCOP superfamily Kinetochore globular domain
SCOP superfamily WGR domain-like
SCOP superfamily SipA N-terminal domain-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily MxiH-like
SCOP superfamily GTF2I-like repeat
SCOP superfamily DNA primase DnaG, C-terminal domain
SCOP superfamily Hypothetical protein MPN330
SCOP superfamily MIT domain
SCOP superfamily DNA methylase specificity domain
SCOP superfamily Fzo-like conserved region
SCOP superfamily Hormone receptor domain
SCOP superfamily PhoU-like
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Respiratory nitrate reductase 1 gamma chain
SCOP superfamily NinB
SCOP superfamily NSFL1 (p97 ATPase) cofactor p47, SEP domain
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily C-terminal domain of Ku80
SCOP superfamily Superantigen MAM

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