SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Chlamydia psittaci 01DC11 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; PVC group; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia; Chlamydia psittaci; Chlamydia psittaci 01DC11

Downloads
Fasta format sequences
Domain assignments


Jump to [ Top of page · Domain assignments ]

Assignment statistics

Sequences: 975 total
628 (64 %) with assignment
358 average length
55 % amino acid coverage
Domains: 947 total
408 unique superfamilies
208 unique families
305 average length
2.3 average superfamily size
57 % formed by duplication
Domain combinations: 207 domain pairs
455 unique architectures

Jump to [ Top of page · Assignment statistics ]

Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

91 75 40 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
26 19 15 2 SCOP 50249 Nucleic acid-binding proteins
18 18 4 0 SCOP 103515 Autotransporter
15 15 10 6 SCOP 51735 NAD(P)-binding Rossmann-fold domains
14 12 11 5 SCOP 54211 Ribosomal protein S5 domain 2-like
13 13 10 1 SCOP 55681 Class II aaRS and biotin synthetases
12 12 3 2 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
12 12 4 1 SCOP 53850 Periplasmic binding protein-like II
10 10 10 1 SCOP 52374 Nucleotidylyl transferase
10 6 5 4 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
10 10 2 3 SCOP 53383 PLP-dependent transferases
10 8 4 0 SCOP 48452 TPR-like
9 3 2 1 SCOP 63411 LuxS/MPP-like metallohydrolase
8 8 2 2 SCOP 102114 Radical SAM enzymes
7 7 2 3 SCOP 51569 Aldolase
7 7 3 1 SCOP 161098 MetI-like
7 7 4 1 SCOP 52833 Thioredoxin-like
7 7 2 1 SCOP 53098 Ribonuclease H-like
7 7 3 2 SCOP 52096 ClpP/crotonase
7 6 6 2 SCOP 50447 Translation proteins
6 6 5 2 SCOP 51905 FAD/NAD(P)-binding domain
6 6 4 1 SCOP 50104 Translation proteins SH3-like domain
6 4 4 1 SCOP 53067 Actin-like ATPase domain
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 2 2 0 SCOP 53738 Phosphoglucomutase, first 3 domains
5 5 1 0 SCOP 53474 alpha/beta-Hydrolases
5 5 4 3 SCOP 53448 Nucleotide-diphospho-sugar transferases
5 5 2 3 SCOP 55120 Pseudouridine synthase
5 5 4 1 SCOP 103473 MFS general substrate transporter
5 5 3 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
5 5 5 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
5 5 5 0 SCOP 51230 Single hybrid motif
5 4 4 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
5 5 5 0 SCOP 47781 RuvA domain 2-like
5 5 3 3 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
4 3 3 1 SCOP 52317 Class I glutamine amidotransferase-like
4 4 2 0 SCOP 56784 HAD-like
4 4 4 0 SCOP 46785 "Winged helix" DNA-binding domain
4 4 3 1 SCOP 55174 Alpha-L RNA-binding motif
4 4 3 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
4 4 3 1 SCOP 51161 Trimeric LpxA-like enzymes
4 4 2 0 SCOP 48371 ARM repeat
4 4 2 0 SCOP 52949 Macro domain-like
4 4 2 0 SCOP 54631 CBS-domain pair
4 3 3 0 SCOP 56601 beta-lactamase/transpeptidase-like
4 2 2 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
4 2 1 0 SCOP 56024 Phospholipase D/nuclease
4 4 3 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
4 3 3 0 SCOP 50156 PDZ domain-like
4 4 2 0 SCOP 56176 FAD-binding/transporter-associated domain-like
4 2 2 1 SCOP 54980 EF-G C-terminal domain-like
4 3 3 0 SCOP 54106 LysM domain
4 2 2 0 SCOP 82185 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
4 4 4 1 SCOP 56719 Type II DNA topoisomerase
4 4 3 0 SCOP 52922 TK C-terminal domain-like
4 4 3 1 SCOP 53623 MurD-like peptide ligases, catalytic domain
4 3 3 0 SCOP 63380 Riboflavin synthase domain-like
3 3 2 1 SCOP 51556 Metallo-dependent hydrolases
3 3 3 2 SCOP 56059 Glutathione synthetase ATP-binding domain-like
3 3 2 1 SCOP 53167 Purine and uridine phosphorylases
3 3 3 1 SCOP 56112 Protein kinase-like (PK-like)
3 3 3 2 SCOP 53697 SIS domain
3 3 3 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
3 3 2 0 SCOP 56300 Metallo-dependent phosphatases
3 3 1 1 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
3 3 2 0 SCOP 100950 NagB/RpiA/CoA transferase-like
3 3 3 2 SCOP 75217 alpha/beta knot
3 3 3 0 SCOP 54292 2Fe-2S ferredoxin-like
3 3 1 1 SCOP 56281 Metallo-hydrolase/oxidoreductase
3 3 2 0 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
3 3 3 2 SCOP 53187 Zn-dependent exopeptidases
3 2 2 0 SCOP 81296 E set domains
3 3 2 0 SCOP 54001 Cysteine proteinases
3 3 3 1 SCOP 51445 (Trans)glycosidases
3 3 3 0 SCOP 52954 Class II aaRS ABD-related
3 3 2 0 SCOP 52091 SpoIIaa-like
3 3 1 0 SCOP 69635 Type III secretory system chaperone-like
3 3 2 1 SCOP 81301 Nucleotidyltransferase
3 2 2 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
3 2 2 2 SCOP 53901 Thiolase-like
3 3 3 1 SCOP 52777 CoA-dependent acyltransferases
3 3 2 0 SCOP 46589 tRNA-binding arm
3 3 3 1 SCOP 48592 GroEL equatorial domain-like
3 1 1 0 SCOP 55979 DNA clamp
3 3 2 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
3 3 3 1 SCOP 52029 GroEL apical domain-like
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 2 2 0 SCOP 54849 GroEL-intermediate domain like
2 2 2 1 SCOP 53927 Cytidine deaminase-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 1 1 SCOP 53613 Ribokinase-like
2 2 2 1 SCOP 81606 PP2C-like
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 1 1 SCOP 53784 Phosphofructokinase
2 2 2 1 SCOP 53597 Dihydrofolate reductase-like
2 2 1 1 SCOP 47240 Ferritin-like
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 2 0 SCOP 82649 SufE/NifU
2 2 2 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
2 2 2 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
2 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
2 2 2 1 SCOP 53633 Carbamate kinase-like
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 1 SCOP 55821 YrdC/RibB
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 1 SCOP 48150 DNA-glycosylase
2 2 2 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
2 2 2 0 SCOP 55811 Nudix
2 2 1 0 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
2 2 1 1 SCOP 55205 EPT/RTPC-like
2 2 2 1 SCOP 88723 PIN domain-like
2 2 2 1 SCOP 54534 FKBP-like
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 1 2 SCOP 52972 ITPase-like
2 2 2 0 SCOP 51126 Pectin lyase-like
2 2 1 0 SCOP 101960 Stabilizer of iron transporter SufD
2 2 2 1 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 2 0 SCOP 52172 CheY-like
2 2 2 0 SCOP 102405 MCP/YpsA-like
2 2 2 0 SCOP 103642 Sec-C motif
2 2 2 0 SCOP 46955 Putative DNA-binding domain
2 2 2 0 SCOP 57783 Zinc beta-ribbon
2 2 1 0 SCOP 53807 "Helical backbone" metal receptor
2 2 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 2 2 1 SCOP 56349 DNA breaking-rejoining enzymes
2 1 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
2 1 1 0 SCOP 49879 SMAD/FHA domain
2 2 1 1 SCOP 118215 Proton glutamate symport protein
2 2 2 0 SCOP 55804 Phoshotransferase/anion transport protein
2 2 1 0 SCOP 48295 TrpR-like
2 2 2 0 SCOP 50486 FMT C-terminal domain-like
2 2 2 0 SCOP 47592 SWIB/MDM2 domain
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 2 1 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
2 2 2 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
2 1 1 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
2 2 1 0 SCOP 81923 Double Clp-N motif
2 2 2 0 SCOP 48019 post-AAA+ oligomerization domain-like
2 2 2 1 SCOP 52440 PreATP-grasp domain
2 2 2 1 SCOP 52210 Succinyl-CoA synthetase domains
2 2 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 0 SCOP 63418 MurE/MurF N-terminal domain
2 2 2 0 SCOP 51984 MurCD N-terminal domain
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 2 2 0 SCOP 54373 FAD-linked reductases, C-terminal domain
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
2 2 2 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 48013 NusB-like
1 1 1 0 SCOP 53271 PRTase-like
1 1 1 0 SCOP 55594 HPr-like
1 1 1 1 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 0 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 1 SCOP 143597 YojJ-like
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 1 SCOP 51366 Ribulose-phoshate binding barrel
1 1 1 0 SCOP 54197 HIT-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 1 SCOP 64182 DHH phosphoesterases
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 51658 Xylose isomerase-like
1 1 1 0 SCOP 47336 ACP-like
1 1 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 52980 Restriction endonuclease-like
1 1 1 0 SCOP 47729 IHF-like DNA-binding proteins
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 50129 GroES-like
1 1 1 0 SCOP 109755 PhoU-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 69765 IpsF-like
1 1 1 1 SCOP 48557 L-aspartase-like
1 1 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 54285 MoaD/ThiS
1 1 1 1 SCOP 142695 RibA-like
1 1 1 0 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 53254 Phosphoglycerate mutase-like
1 1 1 1 SCOP 51395 FMN-linked oxidoreductases
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 1 SCOP 48576 Terpenoid synthases
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 1 SCOP 56796 Dehydroquinate synthase-like
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1 1 1 1 SCOP 50475 FMN-binding split barrel
1 1 1 1 SCOP 56801 Acetyl-CoA synthetase-like
1 1 1 0 SCOP 109604 HD-domain/PDEase-like
1 1 1 0 SCOP 55315 L30e-like
1 1 1 1 SCOP 56672 DNA/RNA polymerases
1 1 1 1 SCOP 48613 Heme oxygenase-like
1 1 1 1 SCOP 51726 UROD/MetE-like
1 1 1 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
1 1 1 1 SCOP 53328 Formyltransferase
1 1 1 0 SCOP 57997 Tropomyosin
1 1 1 0 SCOP 56317 Carbon-nitrogen hydrolase
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 0 SCOP 48208 Six-hairpin glycosidases
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 55781 GAF domain-like
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
1 1 1 0 SCOP 49777 PEBP-like
1 1 1 0 SCOP 88713 Glycoside hydrolase/deacetylase
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 52151 FabD/lysophospholipase-like
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 53800 Chelatase
1 1 1 0 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
1 1 1 1 SCOP 51717 Dihydropteroate synthetase-like
1 1 1 1 SCOP 53795 PEP carboxykinase-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
1 1 1 0 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 1 SCOP 50494 Trypsin-like serine proteases
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 54523 Pili subunits
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 0 SCOP 160246 EspE N-terminal domain-like
1 1 1 0 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 103256 Hypothetical protein TM0160
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 81901 HCP-like
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 1 SCOP 64167 SurE-like
1 1 1 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 1 0 SCOP 51206 cAMP-binding domain-like
1 1 1 0 SCOP 54913 GlnB-like
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 53822 Periplasmic binding protein-like I
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 158442 DsbB-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 143456 VC0467-like
1 1 1 0 SCOP 88697 PUA domain-like
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 103088 OmpA-like
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 1 SCOP 143631 ApbE-like
1 1 1 0 SCOP 57802 Rubredoxin-like
1 1 1 0 SCOP 55785 PYP-like sensor domain (PAS domain)
1 1 1 0 SCOP 144010 CofE-like
1 1 1 0 SCOP 55021 ACT-like
1 1 1 0 SCOP 111384 OmpH-like
1 1 1 1 SCOP 161070 SNF-like
1 1 1 0 SCOP 101801 Surface presentation of antigens (SPOA)
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 82199 SET domain
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 50939 Sialidases
1 1 1 0 SCOP 56271 Pyruvoyl-dependent histidine and arginine decarboxylases
1 1 1 0 SCOP 56534 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 109709 KorB DNA-binding domain-like
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 1 SCOP 46565 Chaperone J-domain
1 1 1 0 SCOP 46548 alpha-helical ferredoxin
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 0 SCOP 90123 ABC transporter transmembrane region
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 1 SCOP 51246 Rudiment single hybrid motif
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
1 1 1 0 SCOP 160544 EscU C-terminal domain-like
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51971 Nucleotide-binding domain
1 1 1 0 SCOP 90257 Myosin rod fragments
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 81665 Calcium ATPase, transmembrane domain M
1 1 1 1 SCOP 68923 PEP carboxykinase N-terminal domain
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 1 SCOP 56436 C-type lectin-like
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 0 SCOP 56037 PheT/TilS domain
1 1 1 1 SCOP 48334 DNA repair protein MutS, domain III
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 51011 Glycosyl hydrolase domain
1 1 1 1 SCOP 161093 MgtE membrane domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 143968 UbiD C-terminal domain-like
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 0 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 57863 ArfGap/RecO-like zinc finger
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 55252 C-terminal domain of arginine repressor
1 1 1 0 SCOP 46934 UBA-like
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 47823 lambda integrase-like, N-terminal domain
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 140591 Type III secretion system domain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 1 SCOP 81271 TGS-like
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 82109 MIR domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 0 SCOP 81653 Calcium ATPase, transduction domain A
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 47655 STAT
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 0 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain

Jump to [ Top of page · Assignment statistics ]


The following superfamilies have one or more weak hits:

SCOP superfamily Mago nashi protein
SCOP superfamily Gametocyte protein Pfg27
SCOP superfamily ssDNA viruses
SCOP superfamily Positive stranded ssRNA viruses
SCOP superfamily R3H domain
SCOP superfamily SEA domain
SCOP superfamily Subunit VIII of photosystem I reaction centre, PsaI
SCOP superfamily Chemotaxis phosphatase CheZ
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily YjeF N-terminal domain-like
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Bacterial hemolysins
SCOP superfamily Growth factor receptor domain
SCOP superfamily OMPA-like
SCOP superfamily Sec1/munc18-like (SM) proteins
SCOP superfamily TATA-box binding protein-like
SCOP superfamily Mog1p/PsbP-like
SCOP superfamily Bactericidal permeability-increasing protein, BPI
SCOP superfamily Bacterial exopeptidase dimerisation domain
SCOP superfamily RNI-like
SCOP superfamily PH domain-like
SCOP superfamily N-terminal domain of alpha and beta subunits of F1 ATP synthase
SCOP superfamily Multiheme cytochromes
SCOP superfamily Heme-dependent peroxidases
SCOP superfamily C-terminal domain of alpha and beta subunits of F1 ATP synthase
SCOP superfamily t-snare proteins
SCOP superfamily Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
SCOP superfamily lambda repressor-like DNA-binding domains
SCOP superfamily Domain of the SRP/SRP receptor G-proteins
SCOP superfamily Apolipoprotein
SCOP superfamily Spectrin repeat
SCOP superfamily Prefoldin
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily YopX-like
SCOP superfamily HAMP domain-like
SCOP superfamily Rhomboid-like
SCOP superfamily Magnesium transport protein CorA, transmembrane region
SCOP superfamily Acetamidase/Formamidase-like
SCOP superfamily Hypothetical protein PA1324
SCOP superfamily Gamma-glutamyl cyclotransferase-like
SCOP superfamily Surp module (SWAP domain)
SCOP superfamily A middle domain of Talin 1
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Formin homology 2 domain (FH2 domain)

Jump to [ Top of page · Assignment statistics ]