SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for ENSRNOP00000008909 from Rattus norvegicus 76_5.0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000008909
Domain Number 1 Region: 282-471
Classification Level Classification E-value
Superfamily Hemopexin-like domain 2.22e-56
Family Hemopexin-like domain 0.0001
Further Details:      
 
Domain Number 2 Region: 82-256
Classification Level Classification E-value
Superfamily Metalloproteases ("zincins"), catalytic domain 2.94e-44
Family Matrix metalloproteases, catalytic domain 0.0000343
Further Details:      
 
Domain Number 3 Region: 24-90
Classification Level Classification E-value
Superfamily PGBD-like 0.0000000000000135
Family MMP N-terminal domain 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
endopeptidase activity 1.536 148.91
metalloendopeptidase activity 2.043 148.91
zinc ion binding 1.65 43.49
integrin binding 1.779 17.72
growth factor receptor binding 1.998 15.09
cytokine receptor binding 2.036 15.09
enzyme activator activity 1.376 14.48
amide binding 1.716 13.08
cell adhesion molecule binding 1.514 11.59
collagen binding 1.844 5.54
Cellular Component IC (bits) H-Score
brush border 1.477 22.56
Golgi lumen 2.24 12.25
secretory granule 1.818 10.6
neuron projection terminus 2.132 10.38
lysosomal membrane 1.986 8.14
trans-Golgi network 1.793 7.96
lytic vacuole 1.571 7.43
vacuolar part 1.621 7.24
dendrite 1.585 7.21
transferase complex 1.423 5.58

Protein sequence

External link(s) Protein: ENSRNOP00000008909   Gene: ENSRNOG00000006778   Transcript: ENSRNOT00000008909
Sequence length 517
Comment pep:known chromosome:Rnor_5.0:7:3187862:3195640:1 gene:ENSRNOG00000006778 transcript:ENSRNOT00000008909 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MDWQQLWLAFLLPVTVSGRALGPAEKEAVVDYLLQYGYLQKPLEGADDFRLEDITEALRT
FQEASELPVSGQMDDATRARMKQPRCGLEDPFNQKTLKYLLLGHWRKKHLTFRILNVPST
LSPSRVRAALHQAFKYWSNVAPLTFREVKAGWADIRLSFHGRQSPYCSNSFDGPGKVLAH
ADVPELGSVHFDNDEFWTEGTYQGVNLRIIAAHEVGHALGLGHSRYTQALMAPVYAGYQP
YFRLHPDDVAGIQALYGKRRPEPEDEEEEVEMHTVSTVTTKPSPMPNPCSSEVDAMMLGP
RGKTYAFKGDYVWTVTDSGPGPLFRVSALWEGLPGNLDAAVYSPRTQRTHFFKGNKVWRY
VDFKLSPGFPMKLNRVEPNLDAALYWPVNQKVFLFKGSGYWQWDELTRTDLSRYPKPIKE
LFTGVPDQPSAAMSWQDGQVYFFKGKEYWRLNQQLRVAKGYPRNTTHWMHCSPRTPDTNS
LTGDVTTPATVESVLDVPSATDAASLSSSANVTLLGA
Download sequence
Identical sequences C0M4B0
ENSRNOP00000008909 ENSRNOP00000008909 10116.ENSRNOP00000008909

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