SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for ENSRNOP00000037549 from Rattus norvegicus 76_5.0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000037549
Domain Number 1 Region: 334-528
Classification Level Classification E-value
Superfamily Hemopexin-like domain 7.85e-63
Family Hemopexin-like domain 0.00000533
Further Details:      
 
Domain Number 2 Region: 101-293
Classification Level Classification E-value
Superfamily Metalloproteases ("zincins"), catalytic domain 2.45e-44
Family Matrix metalloproteases, catalytic domain 0.0000495
Further Details:      
 
Domain Number 3 Region: 41-114
Classification Level Classification E-value
Superfamily PGBD-like 4.71e-17
Family MMP N-terminal domain 0.0037
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
brush border 1.477 22.56
Golgi lumen 2.24 12.25
secretory granule 1.818 10.6
neuron projection terminus 2.132 10.38
lysosomal membrane 1.986 8.14
trans-Golgi network 1.793 7.96
lytic vacuole 1.571 7.43
vacuolar part 1.621 7.24
dendrite 1.585 7.21
transferase complex 1.423 5.58
Molecular Function IC (bits) H-Score
endopeptidase activity 1.536 148.91
metalloendopeptidase activity 2.043 148.91
zinc ion binding 1.65 43.49
integrin binding 1.779 17.72
growth factor receptor binding 1.998 15.09
cytokine receptor binding 2.036 15.09
enzyme activator activity 1.376 14.48
amide binding 1.716 13.08
cell adhesion molecule binding 1.514 11.59
collagen binding 1.844 5.54

Protein sequence

External link(s) Protein: ENSRNOP00000037549   Gene: ENSRNOG00000023643   Transcript: ENSRNOT00000035881
Sequence length 587
Comment pep:known chromosome:Rnor_5.0:12:32636907:32663678:-1 gene:ENSRNOG00000023643 transcript:ENSRNOT00000035881 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MGRRPRGPGSPRGPGPPRPGPGLPPLLLMLALAAHGGCAAPAPRAEDLSLGVEWLSKFGY
LPPADPATGQLQTQEELSKAITAMQQFGGLETTGILDEATLALMKTPRCSLPDLPLGAQS
RRRRQTPLPTKWSKRNLSWRVRTFPRDSPLGRDTVRALMYYALKVWSDITPLNFHEVAGN
MADIQIDFSKADHNDGYPFDGPGGTVAHAFFPGDHHTAGDTHFDDDEAWTFRSSDAHGMD
LFAVAVHEFGHAIGLSHVAAPSSIMQPYYQGPVGDPLRYGLPYEDRVRVWQLYGVRESVS
PTAQLDTPEPEEPPLLPEPPNNRSSTPPQKDVPHRCTAHFDAVAQIRGEAFFFKGKYFWR
LTRDRHLVSLQPAQMHRFWRGLPLHLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEG
YPRPVSDFSLPPGGIDAVFSWAHNDRTYFFKDQLYWRYDDHTRRMDPGYPAQGPLWRGVP
SVLDDAMRWSDGASYFFRGQEYWKVLDGELEAAPGYPQSTARDWLVCGEQLADAEDVGPG
PQGRSGAQDGLAVCSCTSDAHRSALPPLLLLPPLLWGLWTSVSSTAS
Download sequence
Identical sequences D3ZXJ0
ENSRNOP00000037549 10116.ENSRNOP00000037549 ENSRNOP00000037549

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