SUPERFAMILY 1.75 HMM library and genome assignments server

Please note: Superfamily is currently under maintenance and some functionality may be limited. Please bear with us as we fix these problems.

Domain assignment for YBR189W from Saccharomyces cerevisiae SGD

Domain architecture

Domain assignment details

show help)
Strong hits

Sequence:  YBR189W
Domain Number 1 Region: 10-164
Classification Level Classification E-value
Superfamily Alpha-L RNA-binding motif 3.34e-33
Family Ribosomal protein S4 0.007
Further Details:      

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
RNA processing 1.457 74.16
rRNA metabolic process 2.197 74.16
ncRNA processing 1.878 74.16
ribosome biogenesis 2.068 21.03
tRNA aminoacylation 2.003 17.34
RNA modification 2.179 9.99
translation 1.522 9.15
ncRNA metabolic process 1.572 6.34
mitochondrion organization 1.553 4.78
Cellular Component IC (bits) H-Score
ribosomal subunit 2.011 13.52
ribonucleoprotein complex 1.415 11.2
organellar ribosome 2.149 8
cytosol 1.305 6.57
mitochondrial matrix 1.716 4.2
cytosolic ribosome 2.218 3.98
Molecular Function IC (bits) H-Score
aminoacyl-tRNA ligase activity 1.977 89.69
intramolecular transferase activity 2.226 25.18
structural constituent of ribosome 1.983 13.8
isomerase activity 1.669 12.15
RNA binding 1.361 4.14

Protein sequence

External link(s) Locus: YBR189W   Protein: S000000393
Sequence length 195
Comment RPS9B SGDID:S000000393, Chr II from 604503-604509,604923-605503, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Ap and has similarity to E. coli S4 and rat S9 ribosomal proteins"
Download sequence
Identical sequences N1P8D7 P05755
YBR189W YBR189W YBR189W YBR189W YBR189w___KOG3301 4932.YBR189W

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]