SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YDL003W from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YDL003W
Domain Number 1 Region: 485-560
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 0.0000000000000193
Family Rad21/Rec8-like 0.0000147
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
endosome 1.323 31.16
nucleoplasm part 1.496 14.89
condensed chromosome 2.187 13.57
RNA polymerase complex 1.998 12.92
chromosomal part 1.477 12.26
replication fork 2.208 12.19
dendrite 1.585 9.45
ubiquitin ligase complex 1.917 8.87
microtubule cytoskeleton 1.341 8.45
spindle 1.789 8.45

Protein sequence

External link(s) Locus: YDL003W   Protein: S000002161
Sequence length 566
Comment MCD1 SGDID:S000002161, Chr IV from 444681-446381, Verified ORF, "Essential protein required for sister chromatid cohesion in mitosis and meiosis; subunit of the cohesin complex; expression is cell cycle regulated and peaks in S phase"
Sequence
MVTENPQRLTVLRLATNKGPLAQIWLASNMSNIPRGSVIQTHIAESAKEIAKASGCDDES
GDNEYITLRTSGELLQGIVRVYSKQATFLLTDIKDTLTKISMLFKTSQKMTSTVNRLNTV
TRVHQLMLEDAVTEREVLVTPGLEFLDDTTIPVGLMAQENSMERKVQGAAPWDTSLEVGR
RFSPDEDFEHNNLSSMNLDFDIEEGPITSKSWEEGTRQSSRNFDTHENYIQDDDFPLDDA
GTIGWDLGITEKNDQNNDDDDNSVEQGRRLGESIMSEEPTDFGFDLDIEKEAPAGNIDTI
TDAMTESQPKQTGTRRNSKLLNTKSIQIDEETENSESIASSNTYKEERSNNLLTPQPTNF
TTKRLWSEITESMSYLPDPILKNFLSYESLKKRKIHNGREGSIEEPELNVSLNLTDDVIS
NAGTNDNSFNELTDNMSDFVPIDAGLNEAPFPEENIIDAKTRNEQTTIQTEKVRPTPGEV
ASKAIVQMAKILRKELSEEKEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCI
GLSQTEAFGNIKIDAKPALFERFINA
Download sequence
Identical sequences N1P4F1 Q12158
YDL003W YDL003W 4932.YDL003W 355229 YDL003W YDL003W

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