SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YDL209C from Saccharomyces cerevisiae SGD

Domain architecture

Domain assignment details

show help)
Strong hits

Sequence:  YDL209C
Domain Number 1 Region: 123-232
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 0.000000000312
Family Canonical RBD 0.0072
Further Details:      
Weak hits

Sequence:  YDL209C
Domain Number - Region: 69-92
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.000135
Family CCCH zinc finger 0.0057
Further Details:      

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
spliceosomal complex 2.017 51.56
ribonucleoprotein complex 1.415 46.05
nuclear body 1.911 27.46
nucleoplasm part 1.419 27.46
ribonucleoprotein granule 1.998 25.45
nucleolus 1.651 23.57
small nuclear ribonucleoprotein complex 2.004 9.83
chromatin 1.906 7.68
nuclear chromosome 1.723 7.68
chromosomal part 1.478 7.68

Protein sequence

External link(s) Locus: YDL209C   Protein: S000002368
Sequence length 339
Comment CWC2 SGDID:S000002368, Chr IV from 87227-86208, reverse complement, Verified ORF, "Protein involved in pre-mRNA splicing, component of a complex containing Cef1p; interacts with Prp19p; contains an RNA recognition motif; has similarity to S. pombe Cwf2p"
Download sequence
Identical sequences A6ZXC4 C8Z6R0 G2WBV8 H0GS45 N1PAD9 Q12046
YDL209C YDL209C YDL209C 4932.YDL209C YDL209C YDL209C tr|A6ZXC4|A6ZXC4_YEAS7 YDL209C YDL209C YDL209C

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]