SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YDR062W from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  YDR062W
Domain Number 1 Region: 105-524
Classification Level Classification E-value
Superfamily PLP-dependent transferases 5.32e-93
Family GABA-aminotransferase-like 9.17e-06
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
nuclear outer membrane-endoplasmic reticulum membrane network 1.559 41.9
endoplasmic reticulum part 1.433 41.9
mitochondrial matrix 1.707 9.9
mitochondrial envelope 1.571 5.13
mitochondrial inner membrane 1.752 5.13
organelle inner membrane 1.673 4.91
microbody 1.956 4.39
plastid 1.598 3.87

Protein sequence

External link(s) Locus: YDR062W   Protein: S000002469
Sequence length 561
Comment LCB2 SGDID:S000002469, Chr IV from 576472-578157, Verified ORF, "Component of serine palmitoyltransferase, responsible along with Lcb1p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine"
Sequence
MSTPANYTRVPLCEPEELPDDIQKENEYGTLDSPGHLYQVKSRHGKPLPEPVVDTPPYYI
SLLTYLNYLILIILGHVHDFLGMTFQKNKHLDLLEHDGLAPWFSNFESFYVRRIKMRIDD
CFSRPTTGVPGRFIRCIDRISHNINEYFTYSGAVYPCMNLSSYNYLGFAQSKGQCTDAAL
ESVDKYSIQSGGPRAQIGTTDLHIKAEKLVARFIGKEDALVFSMGYGTNANLFNAFLDKK
CLVISDELNHTSIRTGVRLSGAAVRTFKHGDMVGLEKLIREQIVLGQPKTNRPWKKILIC
AEGLFSMEGTLCNLPKLVELKKKYKCYLFIDEAHSIGAMGPTGRGVCEIFGVDPKDVDIL
MGTFTKSFGAAGGYIAADQWIIDRLRLDLTTVSYSESMPAPVLAQTISSLQTISGEICPG
QGTERLQRIAFNSRYLRLALQRLGFIVYGVADSPVIPLLLYCPSKMPAFSRMMLQRRIAV
VVVAYPATPLIESRVRFCMSASLTKEDIDYLLRHVSEVGDKLNLKSNSGKSSYDGKRQRW
DIEEVIRRTPEDCKDDKYFVN
Download sequence
Identical sequences B3LGK8 B5VFW1 C7GVS4 C8Z4Y1 N1P676 P40970 W7Q692
YDR062W 4932.YDR062W YDR062W YDR062W SCRT_00453 YDR062W YDR062W YDR062W YDR062W YDR062W YDR062W

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]