SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YDR123C from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  YDR123C
Domain Number 1 Region: 230-301
Classification Level Classification E-value
Superfamily HLH, helix-loop-helix DNA-binding domain 0.0000000048
Family HLH, helix-loop-helix DNA-binding domain 0.0067
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
transcription factor complex 1.912 49.08
ribonucleoprotein complex 1.414 23.19
chromosomal part 1.477 12.85
nuclear chromosome 1.73 12.85
chromatin 1.822 12.85
transferase complex 1.423 9.7
nucleoplasm part 1.496 9.7
methyltransferase complex 2.218 9.7
nucleolus 1.641 5.21
cytoplasmic ribonucleoprotein granule 1.98 4.48

Protein sequence

External link(s) Locus: YDR123C   Protein: S000002530
Sequence length 304
Comment INO2 SGDID:S000002530, Chr IV from 699466-698552, reverse complement, Verified ORF, "Component of the heteromeric Ino2p/Ino4p basic helix-loop-helix transcription activator that binds inositol/choline-responsive elements (ICREs), required for derepression of phospholipid biosynthetic genes in response to inositol depletion"
Sequence
MQQATGNELLGILDLDNDIDFETAYQMLSSNFDDQMSAHIHENTFSATSPPLLTHELGII
PNVATVQPSHVETIPADNQTHHAPLHTHAHYLNHNPHQPSMGFDQALGLKLSPSSSGLLS
TNESNAIEQFLDNLISQDMMSSNASMNSESHLHIRSPKKQHRYTELNQRYPETHPHSNTG
ELPTNTADVPTEFTTREGPHQPIGNDHYNPPPFSVPEIRIPDSDIPANIEDDPVKVRKWK
HVQMEKIRRINTKEAFERLIKSVRTPPKENGKRIPKHILLTCVMNDIKSIRSANEALQHI
LDDS
Download sequence
Identical sequences B3LGF3 B5VG18 C7GIN1 C8Z539 E7LSN8 E7QCV4 P26798 W7PNZ0
YDR123C YDR123C YDR123C 4932.YDR123C YDR123C YDR123C YDR123C YDR123C YDR123C YDR123C CX00022 YT392 SCRT_00395 YDR123C YDR123C

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]