SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YDR432W from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  YDR432W
Domain Number 1 Region: 87-199
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 4.7e-23
Family Canonical RBD 0.011
Further Details:      
 
Domain Number 2 Region: 198-286
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 0.000000000000837
Family Canonical RBD 0.0042
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
spliceosomal complex 2.032 51.53
ribonucleoprotein complex 1.414 46.22
nucleoplasm part 1.496 27.05
nuclear body 1.907 27.05
nucleolus 1.641 23.59
cytoplasmic ribonucleoprotein granule 1.98 22.75
small nuclear ribonucleoprotein complex 2.005 9.37
chromosomal region 1.98 8.01
chromosomal part 1.477 7.67
nuclear chromosome 1.73 7.67

Protein sequence

External link(s) Locus: YDR432W   Protein: S000002840
Sequence length 414
Comment NPL3 SGDID:S000002840, Chr IV from 1328776-1330020, Verified ORF, "RNA-binding protein that carries poly(A)+ mRNA from the nucleus into the cytoplasm; dissociation from mRNAs is promoted by Mtr10p; phosphorylated by Sky1p in the cytoplasm"
Sequence
MSEAQETHVEQLPESVVDAPVEEQHQEPPQAPDAPQEPQVPQESAPQESAPQEPPAPQEQ
NDVPPPSNAPIYEGEESHSVQDYQEAHQHHQPPEPQPYYPPPPPGEHMHGRPPMHHRQEG
ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHG
KSFANQPLEVVYSKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGT
GALEFPSEEILVEALERLNNIEFRGSVITVERDDNPPPIRRSNRGGFRGRGGFRGGFRGG
FRGGFSRGGFGGPRGGFGGPRGGYGGYSRGGYGGYSRGGYGGSRGGYDSPRGGYDSPRGG
YSRGGYGGPRNDYGPPRGSYGGSRGGYDGPRGDYGPPRDAYRTRDAPRERSPTR
Download sequence
Identical sequences A6ZZ27 B3LFM6 C8Z5Z3 E7KBB7 E7KM65 E7QDJ5 H0GEN4 N1P7H2 Q01560 W7PN20
YDR432W YDR432W YDR432W YDR432W YDR432W YDR432W YDR432W YDR432W YDR432W SCRT_00104 YDR432W YDR432W tr|A6ZZ27|A6ZZ27_YEAS7 YDR432W YDR432W YDR432W YDR432W YDR432W YDR432W 4932.YDR432W

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]