SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for YFR031C-A from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  YFR031C-A
Domain Number 1 Region: 99-245
Classification Level Classification E-value
Superfamily Translation proteins SH3-like domain 3.01e-50
Family C-terminal domain of ribosomal protein L2 0.0000113
Further Details:      
 
Domain Number 2 Region: 1-97
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 6.51e-18
Family Cold shock DNA-binding domain-like 0.0044
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
exosome (RNase complex) 2.182 53.06
replication fork 2.213 37.25
nucleoplasm part 1.369 33.64
chromosomal region 1.996 30.26
protein-DNA complex 1.923 25.92
aminoacyl-tRNA synthetase multienzyme complex 2.213 25.16
nuclear chromosome part 1.842 24
ribosomal subunit 1.983 22.4
chromosomal part 1.512 22.28
intracellular ribonucleoprotein complex 1.368 20.13

Protein sequence

External link(s) Locus: YFR031C-A   Protein: S000002104
Sequence length 254
Comment RPL2A SGDID:S000002104, Chr VI from 221406-221403,221255-220495, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and has similarity to E. coli L2 and rat L8 ribosomal proteins"
Sequence
MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAK
VVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKP
GDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLL
KAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAA
RRTGLLRGSQKTQD
Download sequence
Identical sequences A0A0L8VR97 A6ZVP9 B3LUP0 C8Z7W6 G2WGC6 N1P6U2 P0CX45 P0CX46
001393001|e3izsB1|4.1.1.443|B:1-254 001436117|e4v6iBB1|4.1.1.443|BB:1-254 YFR031C-A YIL018W tr|A6ZVP9|A6ZVP9_YEAS7 YFR031C-A YIL018W YFR031C-A YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A YFR031C-A YFR031C-A SCRT_05580 4932.YFR031C-A 4932.YIL018W YFR031C-A NP_012246.1 NP_116688.3 3j6x.L2 3j6y.L2 3j77.L2 3j78.L2 3jct.A 4v6i.BB 4v7f.B 4v7r.BB 4v7r.DB 4v88.BA 4v88.DA 4v8t.A 4v91.A 5apn.A 5apo.A 5fl8.A 5gak.E 5jcs.A 5juo.F 5jup.F 5jus.F 5jut.F 5juu.F 5mc6.AW 5t62.D 5t6r.D YFR031C-A YIL018W YIL018w___KOG2309 YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]