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Domain assignment for YFR031C-A from Saccharomyces cerevisiae SGD

Domain architecture

Domain assignment details

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Strong hits

Sequence:  YFR031C-A
Domain Number 1 Region: 99-245
Classification Level Classification E-value
Superfamily Translation proteins SH3-like domain 3.01e-50
Family C-terminal domain of ribosomal protein L2 0.0000113
Further Details:      
Domain Number 2 Region: 1-97
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 6.51e-18
Family Cold shock DNA-binding domain-like 0.0044
Further Details:      

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
exosome (RNase complex) 2.182 53.06
replication fork 2.213 37.25
nucleoplasm part 1.369 33.64
chromosomal region 1.996 30.26
protein-DNA complex 1.923 25.92
aminoacyl-tRNA synthetase multienzyme complex 2.213 25.16
nuclear chromosome part 1.842 24
ribosomal subunit 1.983 22.4
chromosomal part 1.512 22.28
intracellular ribonucleoprotein complex 1.368 20.13

Protein sequence

External link(s) Locus: YFR031C-A   Protein: S000002104
Sequence length 254
Comment RPL2A SGDID:S000002104, Chr VI from 221406-221403,221255-220495, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and has similarity to E. coli L2 and rat L8 ribosomal proteins"
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Identical sequences A0A0L8VR97 A6ZVP9 B3LUP0 C8Z7W6 G2WGC6 N1P6U2 P0CX45 P0CX46
YFR031C-A YIL018W YFR031C-A YIL018W 4932.YFR031C-A 4932.YIL018W YFR031C-A YIL018W YFR031C-A YIL018W YIL018w___KOG2309 YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A YFR031C-A tr|A6ZVP9|A6ZVP9_YEAS7 YFR031C-A YIL018W YFR031C-A YFR031C-A YIL018W 001393001|e3izsB1||B:1-254 001436117|e4v6iBB1||BB:1-254 3j6x.L2 3j6y.L2 3j77.L2 3j78.L2 3jct.A 4v6i.BB 4v7f.B 4v7r.BB 4v7r.DB 4v88.BA 4v88.DA 4v8t.A 4v91.A 5apn.A 5apo.A 5fl8.A 5gak.E 5jcs.A 5juo.F 5jup.F 5jus.F 5jut.F 5juu.F 5mc6.AW 5t62.D 5t6r.D YFR031C-A SCRT_05580 YFR031C-A YIL018W YFR031C-A YFR031C-A YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A YIL018W

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