SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YFR031C-A from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YFR031C-A
Domain Number 1 Region: 99-245
Classification Level Classification E-value
Superfamily Translation proteins SH3-like domain 3.01e-50
Family C-terminal domain of ribosomal protein L2 1.13e-05
Further Details:      
 
Domain Number 2 Region: 1-97
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 6.51e-18
Family Cold shock DNA-binding domain-like 0.0044
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
exosome (RNase complex) 2.218 55.21
nucleoplasm part 1.419 33.74
replication fork 2.197 33.6
nuclear chromosome 1.723 24.38
chromosomal part 1.478 22.67
ribonucleoprotein complex 1.415 20.38
ribosomal subunit 2.011 19.53
DNA-directed RNA polymerase complex 2.004 12.27
ribonucleoprotein granule 1.998 10.37
cytosol 1.305 7.61
Biological Process IC (bits) H-Score
DNA-dependent DNA replication 2.082 68.79
DNA duplex unwinding 1.979 46.97
double-strand break repair 1.882 44.57
tRNA aminoacylation 2.003 38.45
translation 1.522 35.24
telomere organization 2.104 26.38
RNA processing 1.457 21.41
mRNA metabolic process 1.625 21.41
RNA 3'-end processing 2.028 21.41
regulation of DNA replication 2.144 20.27

Protein sequence

External link(s) Locus: YFR031C-A   Protein: S000002104
Sequence length 254
Comment RPL2A SGDID:S000002104, Chr VI from 221406-221403,221255-220495, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and has similarity to E. coli L2 and rat L8 ribosomal proteins"
Sequence
MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAK
VVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKP
GDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLL
KAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAA
RRTGLLRGSQKTQD
Download sequence
Identical sequences A6ZVP9 B3LUP0 C8Z7W6 G2WGC6 N1P6U2 P0CX45 P0CX46 W7PLF7 W7RFQ4
YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A YIL018W YFR031C-A 4932.YFR031C-A 4932.YIL018W YFR031C-A YIL018W SCRT_05580 YFR031C-A YIL018W tr|A6ZVP9|A6ZVP9_YEAS7 YFR031C-A YIL018W 1vw8.B 1vwu.B 1vxv.B 1vxy.B 3izc.B 3izs.B 3j65.B 3o58.B 3o5h.B 3u5e.A 3u5i.A 4b6a.A 4cuw.A YFR031C-A YIL018W YFR031C-A YFR031C-A YIL018w___KOG2309 YFR031C-A YFR031C-A YFR031C-A YIL018W

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