SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YGR109W-A from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YGR109W-A
Domain Number 1 Region: 248-285
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 9e-06
Family Retrovirus zinc finger-like domains 0.005
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
kinase binding 1.678 22.86
DNA polymerase activity 2.238 9.99
nucleotidyltransferase activity 1.651 9.07
nuclease activity 1.721 5.99
ribonuclease activity 1.943 5.99
RNA binding 1.36 5.85
Cellular Component IC (bits) H-Score
nucleoplasm part 1.418 28.79
ribonucleoprotein complex 1.418 10.23
ribonucleoprotein granule 1.999 9.56
nuclear body 1.902 6.61
spliceosomal complex 2.025 4.98

Protein sequence

External link(s) Locus: YGR109W-A   Protein: S000007346
Sequence length 290
Comment YGR109W-A SGDID:S000007346, Chr VII from 707614-708486, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag"
Sequence
MSFMDQIPGGGNYPKLPVECLPNFPIQPSLTFRGRNDSHKLKNFISEIMLNMSMISWPND
ASRIVYCRRHLLNPAAQWANDFVQEQGILEITFDTFIQGLYQHFYKPPDINKIFNAITQL
SEAKLGIERLNQRFRKIWDRMPPDFMTEKAAIMTYTRLLTKETYNIVRMHKPETLKDAME
EAYQTTALTERFFPGFELDADGDTIIGATTHLQEEYDSDYDSEDNLTQNGYVHTVRTRRS
YNKPMSNHRNRRNNNPSREECIKNRLCFYCKKEGHRLNECRARKASSNRS
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Identical sequences Q12173
YGR109W-A 4932.YGR109W-A YGR109W-A 354941 YGR109W-A

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