SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YGR118W from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YGR118W
Domain Number 1 Region: 22-143
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 8.14e-35
Family Cold shock DNA-binding domain-like 0.0018
Further Details:      
 

Protein sequence

External link(s) Locus: YGR118W   Protein: S000003350
Sequence length 145
Comment RPS23A SGDID:S000003350, Chr VII from 726978-727042,727363-727735, Verified ORF, "Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Bp and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal"
Sequence
MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIE
SKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGV
RFKVVKVSGVSLLALWKEKKEKPRS
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Identical sequences A6ZUD1 B3LIB1 C8ZJF4 G2WEK0 G8ZX19 H2ANL8 N1P5W3 P0CX29 P0CX30 P0CY39 P0CY40 Q6FLA8 Q6YIA3 W7PJ85 W7QUI5
YGR118W YPR132W YGR118W YPR132W gnl|GLV|CAGL0L04840g YGR118W YPR132W YGR118W YPR132W YPR132W YGR118W YPR132W YGR118W YPR132W YGR118W YPR132W YGR118W YGR118W YPR132W YGR118W YPR132W YPR132W YGR118W YPR132W YGR118W YPR132W 4932.YGR118W 4932.YPR132W YGR118W YPR132W SCRT_00901 SCRT_02607 YGR118W YPR132W YGR118W tr|A6ZUD1|A6ZUD1_YEAS7 YPR132W 3izb.L 3o2z.P 3o30.P 3u5c.X 3u5g.X YGR118W YPR132W YGR118W YPR132W YGR118W YPR132W YPR132W YGR118W YPR132W YGR118W YPR132W YPR132W

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