SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YIL082W from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YIL082W
Domain Number 1 Region: 248-285
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 5.86e-06
Family Retrovirus zinc finger-like domains 0.005
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
kinase binding 1.686 22.83
DNA polymerase activity 2.239 9.97
nucleotidyltransferase activity 1.652 9.05
nuclease activity 1.722 5.97
ribonuclease activity 1.944 5.97
RNA binding 1.361 5.88
Cellular Component IC (bits) H-Score
nucleoplasm part 1.419 28.74
ribonucleoprotein complex 1.415 10.28
ribonucleoprotein granule 1.998 9.57
nuclear body 1.911 6.68
spliceosomal complex 2.017 4.98

Protein sequence

External link(s) Locus: YIL082W   Protein: S000001344
Sequence length 290
Comment YIL082W SGDID:S000001344, Chr IX from 205632-206504, Dubious ORF, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag"
Sequence
MSFMDQIPGGGNYPKLPVECLPNFPIQPSLTFRGRNDSHKLKNFISEIMLNMSMISWPND
ASRIVYCRRHLLNPAAQWANDFVQEQGILEITFDTFIQGLYQHFYKPPDINKIFNAITQL
SEAKLGIERLNQRFRKIWDRMPPDFMTEKAAIMTYTRLLTKETYNIVRMHKPETLKDAME
EAYQTTALTERFFPGFELDADGDTIIGATTHLQEEYDSDYDSEDNLTQNRYVHTVRTRRS
YNKPMSNHRNRRNNNASREECIKNRLCFYCKKEGHRLNECRARKASSNRS
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Identical sequences Q99219
YGR109W-A YIL082W YIL082W 4932.YIL082W YIL082W YIL082W

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