SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YKR059W from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YKR059W
Domain Number 1 Region: 91-374
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 3.09e-73
Family Tandem AAA-ATPase domain 3.99e-07
Further Details:      
 
Domain Number 2 Region: 58-100
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 6.11e-07
Family Tandem AAA-ATPase domain 0.00058
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
microtubule associated complex 1.999 25.69
chromosomal part 1.477 20.41
nucleoplasm part 1.418 15.58
endosome 1.325 14.24
cilium 1.611 13.15
extrinsic to plasma membrane 1.992 12.72
internal side of plasma membrane 2.099 12.51
extracellular organelle 1.593 12.36
ribonucleoprotein complex 1.418 9.43
DNA-directed RNA polymerase complex 2.005 9.42

Protein sequence

External link(s) Locus: YKR059W   Protein: S000001767
Sequence length 395
Comment TIF1 SGDID:S000001767, Chr XI from 554629-555816, Verified ORF, "Translation initiation factor eIF4A, identical to Tif2p; DEA(D/H)-box RNA helicase that couples ATPase activity to RNA binding and unwinding; forms a dumbbell structure of two compact domains connected by a linker; interacts with eIF4G"
Sequence
MSEGITDIEESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH
DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIK
VHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGF
KEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVN
VEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERD
TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA
INFVTNEDVGAMRELEKFYSTQIEELPSDIATLLN
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Identical sequences A6ZQJ1 B3LRD4 C8ZCM2 E7KE57 E7KQ74 E7LW24 E7NK76 E7Q5E8 E7QGE4 G2WI87 H0GI72 N1P0I8 P10081 W7Q0Q6 W7RCW8
YJL138C YKR059W YKR059W YJL138C YKR059W YJL138C YKR059W YJL138C YKR059W YJL138C YKR059W YJL138C YKR059W YKR059W YKR059W YJL138C YKR059W 4932.YJL138C 4932.YKR059W YJL138C YKR059W SCRT_04075 YJL138C YJL138C YKR059W sp|A6ZQJ1|IF4A_YEAS7 2vso.A 2vso.B 2vsx.A 2vsx.B YJL138C YKR059W YJL138C YKR059W YJL138C YKR059W YKR059w___KOG0327 YJL138C YKR059W YKR059W

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