SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YLR048W from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YLR048W
Domain Number 1 Region: 12-190
Classification Level Classification E-value
Superfamily Ribosomal protein S2 2.75e-63
Family Ribosomal protein S2 2.06e-05
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
extracellular matrix binding 1.943 21.65
structural constituent of ribosome 1.982 4.01
Cellular Component IC (bits) H-Score
ribosomal subunit 2.011 34.95
ribonucleoprotein complex 1.418 20.25
mitochondrial matrix 1.707 8.57
organellar ribosome 2.15 8.5
cytosol 1.307 8.39
cytosolic ribosome 2.218 3.84
Biological Process IC (bits) H-Score
translation 1.521 21.92
ribosome biogenesis 2.067 8.77
cytoplasmic transport 1.348 6.57
protein localization to organelle 1.463 4.45

Protein sequence

External link(s) Locus: YLR048W   Protein: S000004038
Sequence length 252
Comment RPS0B SGDID:S000004038, Chr XII from 242233-242322,242682-243350, Verified ORF, "Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Ap; required for maturation of 18S rRNA along with Rps0Ap; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal"
Sequence
MSLPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLA
ARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRL
VIVTDPRLDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLARE
VLRLRGALVDRTQPWSIMPDLYFYRNPEEVEQVAEEAAAAEEGEEEEVKEEVTEGQAEAT
EWAEENADNVEW
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Identical sequences A7A0V3 B3LT19 C8ZD20 G2WIP1 N1NZ34 P46654 W7PCS1 W7QVJ5
YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W 4932.YLR048W YLR048W SCRT_05035 YLR048W YLR048W sp|A7A0V3|RSSA2_YEAS7 YLR048W YLR048W YLR048W YLR048W YLR048W

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