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Domain assignment for YLR048W from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YLR048W
Domain Number 1 Region: 12-190
Classification Level Classification E-value
Superfamily Ribosomal protein S2 2.75e-63
Family Ribosomal protein S2 0.0000206
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
extracellular matrix binding 1.924 19.68
structural constituent of ribosome 1.965 4.28
Biological Process IC (bits) H-Score
translation 1.516 25.22
ribosome biogenesis 1.945 10.55
ncRNA metabolic process 1.499 7.25
rRNA metabolic process 2.134 7.25
mitochondrion organization 1.534 5
RNA processing 1.497 4.9
ncRNA processing 1.821 4.9
Cellular Component IC (bits) H-Score
ribosomal subunit 1.948 37.87
intracellular ribonucleoprotein complex 1.323 21.4
mitochondrial ribosome 2.079 10.27
cytosolic part 1.678 8.64
cytosolic ribosome 2.062 7.58
mitochondrial matrix 1.568 7.52

Protein sequence

External link(s) Locus: YLR048W   Protein: S000004038
Sequence length 252
Comment RPS0B SGDID:S000004038, Chr XII from 242233-242322,242682-243350, Verified ORF, "Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Ap; required for maturation of 18S rRNA along with Rps0Ap; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal"
Sequence
MSLPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLA
ARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRL
VIVTDPRLDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLARE
VLRLRGALVDRTQPWSIMPDLYFYRNPEEVEQVAEEAAAAEEGEEEEVKEEVTEGQAEAT
EWAEENADNVEW
Download sequence
Identical sequences A7A0V3 B3LT19 C8ZD20 G2WIP1 N1NZ34 P46654 W7PCS1 W7QVJ5
YLR048W YLR048W 4932.YLR048W YLR048W YLR048W YLR048W YLR048W sp|A7A0V3|RSSA2_YEAS7 YLR048W YLR048W YLR048W SCRT_05035 YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W

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