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Domain assignment for YLR048W from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YLR048W
Domain Number 1 Region: 12-190
Classification Level Classification E-value
Superfamily Ribosomal protein S2 2.75e-63
Family Ribosomal protein S2 0.0000206
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
laminin binding 2.063 20.53
structural constituent of ribosome 1.959 4.28
Cellular Component IC (bits) H-Score
ribosomal subunit 1.983 40.21
intracellular ribonucleoprotein complex 1.368 22.58
organellar ribosome 2.107 14.03
cytosol 1.295 9.56
mitochondrial matrix 1.611 8.27
cytosolic ribosome 2.235 4.03
Biological Process IC (bits) H-Score
translation 1.514 26.02
ribosome biogenesis 1.853 16.68
ribonucleoprotein complex biogenesis 1.7 14.25
ncRNA metabolic process 1.491 6.58
rRNA metabolic process 2.071 6.58
ribonucleoprotein complex assembly 1.922 5.65
mitochondrial gene expression 2.033 5.33
RNA processing 1.499 4.67
ncRNA processing 1.837 4.67

Protein sequence

External link(s) Locus: YLR048W   Protein: S000004038
Sequence length 252
Comment RPS0B SGDID:S000004038, Chr XII from 242233-242322,242682-243350, Verified ORF, "Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Ap; required for maturation of 18S rRNA along with Rps0Ap; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal"
Sequence
MSLPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLA
ARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRL
VIVTDPRLDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLARE
VLRLRGALVDRTQPWSIMPDLYFYRNPEEVEQVAEEAAAAEEGEEEEVKEEVTEGQAEAT
EWAEENADNVEW
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Identical sequences A0A0L8VKK2 A7A0V3 B3LT19 C8ZD20 G2WIP1 N1NZ34 P46654
YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W 4932.YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W YLR048W SCRT_05035 sp|A7A0V3|RSSA2_YEAS7

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