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Domain assignment for YMR044W from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YMR044W
Domain Number 1 Region: 6-43,107-163
Classification Level Classification E-value
Superfamily Tudor/PWWP/MBT 6.02e-23
Family PWWP domain 0.013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
nucleoplasm part 1.424 59.4
nuclear body 1.842 59.4
cytoplasmic ribonucleoprotein granule 1.909 36.2
intracellular ribonucleoprotein complex 1.323 21.16
cullin-RING ubiquitin ligase complex 2.089 13.91
organelle inner membrane 1.692 11.31
nuclear envelope 1.869 11.31
cell body 1.528 10.88
somatodendritic compartment 1.407 10.88
chromosomal part 1.471 9.02

Protein sequence

External link(s) Locus: YMR044W   Protein: S000004647
Sequence length 475
Comment IOC4 SGDID:S000004647, Chr XIII from 355383-356810, Verified ORF, "Member of a complex (Isw1b) with Isw1p and Ioc2p that exhibits nucleosome-stimulated ATPase activity and acts within coding regions to coordinate transcription elongation with termination and processing, contains a PWWP motif"
Sequence
MSEAIFQPTDIVLAKVKGFSAWPAMIIPNELIPDNILKTKPVSVHKGKSGSDKKANEDID
ADMESEARDREQSEEEEDIEDFGESEANPEKFIIYTPVLKFRKNDTLKSTYCVKFFCDDS
YIWVKPMDMKILTSEDCRKWLSGKQRKNKKLIPAYEMAMRGKNGIDIWEFVEYGSYGKPD
EEEYVEEEEEENEPEKKAIRPTRSSSRQRQKRASETEKSEGGNSNKRKRVTRSTRQQAID
ASEEEEEEEEEKVQEAVRKRPQRTKTKKVVVSKTKPNPKTKAKKEKPKPPKPIKYHFEDD
EDWSIVGLGPQDLSIEKTMDPIAKKLSQKKNLEKHVEIKLDLEDKLAGINKLLCDVLCSA
INQAVSIKDDFEIILDELQIALDTRGSRNEFITIFQSNNSLLLNFRILFNLRKRELNKWD
LWDRFQDIFKHIYSYQFIPDTEDWQLEQNMEIEEMDREKPSFSEDVKEEESKVGA
Download sequence
Identical sequences C7GL75 Q04213
4932.YMR044W YMR044W YMR044W YMR044W YMR044W YMR044W YMR044W

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