SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YMR051C from Saccharomyces cerevisiae SGD

Domain architecture

Domain assignment details

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No Significant Hits.

Weak hits

Sequence:  YMR051C
Domain Number - Region: 68-176
Classification Level Classification E-value
Superfamily beta-sandwich domain of Sec23/24 0.0175
Family beta-sandwich domain of Sec23/24 0.053
Further Details:      
Domain Number - Region: 222-302
Classification Level Classification E-value
Superfamily Bacterial hemolysins 0.0654
Family HBL-like 0.054
Further Details:      

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Locus: YMR051C   Protein: S000004654
Sequence length 440
Comment YMR051C SGDID:S000004654, Chr XIII from 378324-377002, reverse complement, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag"
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Identical sequences A6ZLP7 E7NP66 P0CX65 P0CX66 P0CX67 P0CX68 P0CX69
YBR012W-A YDR098C-A YDR261C-C YDR316W-A YER159C-A YGR027W-A YGR161C-C YJR026W YLR157C-A YLR227W-A YML045W-A YMR051C YOL103W-A YPR158C-C YBR012W-A YER159C-A YER159C-A YGR027W-A YJR028W YOR142W-A YPR137C-A 4932.YDR316W-A 4932.YER159C-A 4932.YGR161C-C 4932.YMR051C YDR316W-A YER159C-A YGR161C-C YMR051C YDR316W-A YER159C-A YGR161C-C YMR051C YDR316W-A YER159C-A YGR161C-C YMR051C tr|A6ZLP7|A6ZLP7_YEAS7

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