SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YMR213W from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  YMR213W
Domain Number 1 Region: 9-92
Classification Level Classification E-value
Superfamily Homeodomain-like 1.03e-17
Family Myb/SANT domain 0.013
Further Details:      
 
Weak hits

Sequence:  YMR213W
Domain Number - Region: 551-586
Classification Level Classification E-value
Superfamily GreA transcript cleavage protein, N-terminal domain 0.0759
Family GreA transcript cleavage protein, N-terminal domain 0.0075
Further Details:      
 

Protein sequence

External link(s) Locus: YMR213W   Protein: S000004826
Sequence length 590
Comment CEF1 SGDID:S000004826, Chr XIII from 693380-695152, Verified ORF, "Essential splicing factor; associated with Prp19p and the spliceosome, contains an N-terminal c-Myb DNA binding motif necessary for cell viability but not for Prp19p association, evolutionarily conserved and homologous to S. pombe Cdc5p"
Sequence
MPPVPIYVKGGVWTNVEDQILKAAVQKYGTHQWSKVASLLQKKTARQSELRWNEYLNPKL
NFTEFSKEEDAQLLDLARELPNQWRTIADMMARPAQVCVERYNRLLESEDSGGAALSTGV
TDLKAGDINPNAETQMARPDNGDLEDEEKEMLAEARARLLNTQGKKATRKIRERMLEESK
RIAELQKRRELKQAGINVAIKKPKKKYGTDIDYNEDIVYEQAPMPGIYDTSTEDRQIKKK
FEQFERKVNRKGLDGNKDKPSKKNKDKKRKHDENEHVEKAALGESTTLTDEYKKPKLILS
APGTKQGKVTYKKKLESKRQKLIEAQATGTVLTPKELLPHDSGQEDNERSNIKSGKQLKS
RIRKFLVQMFASLPSPKNDFEIVLSEDEKEEDAEIAEYEKEFENERAMNEEDNFIEPPSQ
NDAPRVSLVAVPLAYSTLPIPEFKNNPQSAIDNKYNLLVANAINKEPHMVPEDTVDFLKE
VESRMQHITQGRTSMKIQFKTAMPPTEVLLESIQSKVESIEQLQRKLQHVQPLEQQNNEM
CSTLCHHSLPALIEGQRKYYADYYAYRQEIRSLEGRRKRLQAMLNSSSSI
Download sequence
Identical sequences E7KSY0 Q03654 W7QUQ1
YMR213W YMR213W YMR213W 4932.YMR213W YMR213W YMR213W YMR213W

Jump to [ Top of page · Domain architecture · Domain assignment details ]