SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YMR236W from Saccharomyces cerevisiae SGD

Domain architecture

Domain assignment details

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Strong hits

Sequence:  YMR236W
Domain Number 1 Region: 30-101
Classification Level Classification E-value
Superfamily Histone-fold 0.00000000144
Family TBP-associated factors, TAFs 0.0092
Further Details:      

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
nucleoplasm part 1.419 38.26
chromosomal part 1.478 32.11
transcription factor complex 1.881 31.3
DNA-directed RNA polymerase complex 2.004 27.86
SWI/SNF superfamily-type complex 2.177 23.8
lipid particle 1.519 21.32
nuclear chromosome 1.723 11.75
replication fork 2.197 11.75
condensed chromosome 2.187 9.51
methyltransferase complex 2.218 8.09

Protein sequence

External link(s) Locus: YMR236W   Protein: S000004849
Sequence length 157
Comment TAF9 SGDID:S000004849, Chr XIII from 742970-743443, Verified ORF, "Subunit (17 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H3"
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Identical sequences A6ZMU9 B3LMC5 C7GRB5 C8ZFA1 E7KGY2 E7KSZ6 E7LYX6 E7NLS3 E7Q858 E7QIL8 G2WKU4 H0GLD9 N1NZ24 Q05027 W7PYE6 W7RGA6
YMR236W YMR236W YMR236W SCRT_02131 YMR236W YMR236W YMR236W APC7026 YT72 YMR236W YMR236W YMR236W YMR236W YMR236W YMR236W YMR236W tr|A6ZMU9|A6ZMU9_YEAS7 YMR236W YMR236W YMR236W 4932.YMR236W YMR236W YMR236W YMR236W YMR236W YMR236W YMR236W YMR236W

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