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Domain assignment for YMR296C from Saccharomyces cerevisiae SGD

Domain architecture

Domain assignment details

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Strong hits

Sequence:  YMR296C
Domain Number 1 Region: 143-457,496-547
Classification Level Classification E-value
Superfamily PLP-dependent transferases 1.19e-59
Family GABA-aminotransferase-like 0.00014
Further Details:      

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
nuclear outer membrane-endoplasmic reticulum membrane network 1.475 41.33
endoplasmic reticulum part 1.329 41.33
mitochondrial matrix 1.568 11.46
oxidoreductase complex 1.774 9.03
microbody 1.816 5.31
mitochondrial envelope 1.593 4.67
organelle inner membrane 1.692 4.44

Protein sequence

External link(s) Locus: YMR296C   Protein: S000004911
Sequence length 558
Comment LCB1 SGDID:S000004911, Chr XIII from 860890-859214, reverse complement, Verified ORF, "Component of serine palmitoyltransferase, responsible along with Lcb2p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine"
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Identical sequences A6ZN12 B3LMI4 B5VQ63 C7GTK3 E7KGL9 E7NLV8 E7Q7Y7 E7QIT4 P25045 W7PMK0 W7R7H3
YMR296C YMR296C YMR296C YMR296C YMR296C YMR296C YMR296c___KOG1358 YMR296C YMR296C 4932.YMR296C YMR296C YMR296C YMR296C YMR296C YMR296C YMR296C SCRT_02193 YMR296C YMR296C YMR296C tr|A6ZN12|A6ZN12_YEAS7

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