SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YNL002C from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YNL002C
Domain Number 1 Region: 141-285
Classification Level Classification E-value
Superfamily Ribosomal protein L30p/L7e 1.26e-29
Family Ribosomal protein L30p/L7e 0.0079
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
structural constituent of ribosome 1.983 36.75
Cellular Component IC (bits) H-Score
ribosomal subunit 2.011 40.03
ribonucleoprotein complex 1.415 22.8
mitochondrial matrix 1.716 16.84
organellar ribosome 2.149 7.36
cytosolic ribosome 2.218 5.57
plastid 1.6 4.59
cytosol 1.305 3.42
Biological Process IC (bits) H-Score
translation 1.522 11.72
ncRNA metabolic process 1.572 10.26
RNA processing 1.457 10.26
rRNA metabolic process 2.197 10.1
ribosome biogenesis 2.068 8.77
ncRNA processing 1.878 6.99

Protein sequence

External link(s) Locus: YNL002C   Protein: S000004947
Sequence length 322
Comment RLP7 SGDID:S000004947, Chr XIV from 627144-626176, reverse complement, Verified ORF, "Nucleolar protein with similarity to large ribosomal subunit L7 proteins; constituent of 66S pre-ribosomal particles; plays an essential role in processing of precursors to the large ribosomal subunit RNAs"
Sequence
MSSTQDSKAQTLNSNPEILLRKRRNADRTRIERQELAKKKREEQIKKKRSNKNKFVRAES
IVAKTLATSREKERIKRVSILEDKKAKNETQHIASGKDFILKITEKANGAEENSVDLEET
EEEEDDGLIREKTTYDGKPALLFIVRVRGPLAVNIPNKAFKILSLLRLVETNTGVFVKLT
KNVYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHEIVLNDNNIVEEQLG
DHGIICVEDIIHEIATMGESFSVCNFFLQPFKLNREVSGFGSLNRLRKIKQREAESRTRQ
FSNAATAPVIEVDIDSLLAKLN
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Identical sequences B3LPP0 C8ZFM4 E7KTQ3 E7QK36 H0GMS4 N1NZN2 P40693 W7QTE6
YNL002C YNL002C 4932.YNL002C YNL002C YNL002C SCRT_03143 YNL002C YNL002C YNL002C 3j65.r 3j66.s YNL002C YNL002C YNL002C

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