SUPERFAMILY 1.75 HMM library and genome assignments server

Please note: Superfamily is currently under maintenance and some functionality may be limited. Please bear with us as we fix these problems.

Domain assignment for YNL002C from Saccharomyces cerevisiae SGD

Domain architecture

Domain assignment details

show help)
Strong hits

Sequence:  YNL002C
Domain Number 1 Region: 141-285
Classification Level Classification E-value
Superfamily Ribosomal protein L30p/L7e 1.26e-29
Family Ribosomal protein L30p/L7e 0.0079
Further Details:      

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
ribosomal subunit 2.011 40
ribonucleoprotein complex 1.418 22.73
mitochondrial matrix 1.707 16.82
organellar ribosome 2.15 7.35
cytosolic ribosome 2.218 5.55
plastid 1.598 4.59
cytosol 1.307 3.43
Biological Process IC (bits) H-Score
translation 1.521 11.72
ncRNA metabolic process 1.572 10.26
RNA processing 1.458 10.26
rRNA metabolic process 2.197 10.09
ribosome biogenesis 2.067 8.77
ncRNA processing 1.877 6.99
Molecular Function IC (bits) H-Score
structural constituent of ribosome 1.982 36.72

Protein sequence

External link(s) Locus: YNL002C   Protein: S000004947
Sequence length 322
Comment RLP7 SGDID:S000004947, Chr XIV from 627144-626176, reverse complement, Verified ORF, "Nucleolar protein with similarity to large ribosomal subunit L7 proteins; constituent of 66S pre-ribosomal particles; plays an essential role in processing of precursors to the large ribosomal subunit RNAs"
Download sequence
Identical sequences B3LPP0 C8ZFM4 E7KTQ3 E7QK36 H0GMS4 N1NZN2 P40693 W7QTE6
YNL002C 3j65.r 3j66.s SCRT_03143 YNL002C YNL002C YNL002C 4932.YNL002C YNL002C YNL002C YNL002C YNL002C YNL002C YNL002C

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]