SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for YOL142W from Saccharomyces cerevisiae SGD

Domain architecture

Domain assignment details

show help)
Strong hits

Sequence:  YOL142W
Domain Number 1 Region: 62-156
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 2.06e-23
Family Cold shock DNA-binding domain-like 0.0000118
Further Details:      
Domain Number 2 Region: 152-234
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 1.9e-21
Family Eukaryotic type KH-domain (KH-domain type I) 0.00000449
Further Details:      

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
exosome (RNase complex) 2.182 53.06
dendrite 1.582 47.08
replication fork 2.213 37.25
nucleoplasm part 1.369 33.64
chromosomal region 1.996 30.26
protein-DNA complex 1.923 25.92
aminoacyl-tRNA synthetase multienzyme complex 2.213 25.16
nuclear chromosome part 1.842 24
cytoplasmic region 1.567 23.05
ribosomal subunit 1.983 22.4

Protein sequence

External link(s) Locus: YOL142W   Protein: S000005502
Sequence length 240
Comment RRP40 SGDID:S000005502, Chr XV from 55557-56279, Verified ORF, "Protein involved in rRNA processing; component of the exosome 3->5 exonuclease complex"
Download sequence
Identical sequences 4932.YOL142W 355010 YOL142W

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]