SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YPL220W from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YPL220W
Domain Number 1 Region: 12-217
Classification Level Classification E-value
Superfamily Ribosomal protein L1 2.49e-60
Family Ribosomal protein L1 0.00013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
structural constituent of ribosome 1.984 18.41
Cellular Component IC (bits) H-Score
mitochondrial matrix 1.714 14.82
organellar ribosome 2.15 14.82
ribosomal subunit 2.011 10.79
cytosol 1.301 6.87
nucleolus 1.641 6.8
ribonucleoprotein complex 1.414 6.67
cytosolic ribosome 2.218 3.67
Biological Process IC (bits) H-Score
regulation of cellular response to stress 1.416 24.24
translation 1.518 9.25
ribosome biogenesis 2.068 5.17

Protein sequence

External link(s) Locus: YPL220W   Protein: S000006141
Sequence length 217
Comment RPL1A SGDID:S000006141, Chr XVI from 135789-136442, Verified ORF, "N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl1Bp and has similarity to E. coli L1 and rat L10a ribosomal proteins; rpl1a rpl1b double null mutation is lethal"
Sequence
MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPR
PNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQV
PRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLV
NQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY
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Identical sequences A6ZU48 B3LHJ3 B5VIJ6 C7GN47 C8Z8B5 E7KCE2 E7KNB3 E7LU91 E7NHJ3 E7Q3R2 E7QEL3 G2WNW5 H0GPB5 N1P598 P0CX43 P0CX44 W7RKR4
4932.YGL135W 4932.YPL220W 1s1i.A 1vw8.A 1vwu.A 1vxv.A 1vxy.A 3izc.A 3izs.A 3j65.A 3o58.A 3o5h.A 4cuw.t YGL135W YPL220W YGL135W YPL220W YGL135W YPL220W YGL135W YPL220W YPL220W YGL135W YPL220W YGL135W YPL220W tr|A6ZU48|A6ZU48_YEAS7 YGL135W YPL220W YGL135W YPL220W YGL135W YPL220W 1s1iA YGL135W YPL220W ORFP:21446 ORFP:8073 YGL135W YPL220W YPL220W YGL135W YPL220W YPL220W SCRT_01129 SCRT_02279 YGL135W YPL220W YGL135W YPL220W YGL135W YPL220W YGL135W YPL220W

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