SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for YPR086W from Saccharomyces cerevisiae SGD

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YPR086W
Domain Number 1 Region: 238-328
Classification Level Classification E-value
Superfamily Cyclin-like 2.68e-23
Family Transcription factor IIB (TFIIB), core domain 0.0018
Further Details:      
 
Domain Number 2 Region: 127-214
Classification Level Classification E-value
Superfamily Cyclin-like 4.54e-19
Family Transcription factor IIB (TFIIB), core domain 0.0023
Further Details:      
 
Domain Number 3 Region: 18-70
Classification Level Classification E-value
Superfamily Zinc beta-ribbon 5.95e-14
Family Transcriptional factor domain 0.0025
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
DNA-directed RNA polymerase complex 2.004 37
transcription factor complex 1.881 25.65
ubiquitin ligase complex 1.933 11.41
chromosomal part 1.478 11.07
microtubule cytoskeleton 1.333 7.89
centrosome 1.805 7.56
nucleoplasm part 1.419 4.15

Protein sequence

External link(s) Locus: YPR086W   Protein: S000006290
Sequence length 345
Comment SUA7 SGDID:S000006290, Chr XVI from 710099-711136, Verified ORF, "Transcription factor TFIIB, a general transcription factor required for transcription initiation and start site selection by RNA polymerase II"
Sequence
MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR
SEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMD
KKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC
RRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIP
RFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQ
TLQVTEGTIKSGYKILYEHRDKLVDPQLIANGVVSLDNLPGVEKK
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Identical sequences N1NXN0 P29055
YPR086W 4932.YPR086W YPR086W YPR086W YPR086W 3k7a.M 4bbr.M 4bbs.M YPR086w___KOG1597 YPR086W

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