SUPERFAMILY 1.75 HMM library and genome assignments server

Domain assignment for P62269 from Uniprot 2014_06

Domain architecture


Domain assignment details

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Strong hits

Sequence:  P62269
Domain Number 1 Region: 13-152
Classification Level Classification E-value
Superfamily S13-like H2TH domain 2.06e-39
Family Ribosomal protein S13 0.0026
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
endonuclease activity 2.013 24.94
double-stranded DNA binding 2.036 18.08
nuclease activity 1.69 17.55
hydrolase activity, acting on glycosyl bonds 1.727 10.47
lyase activity 1.474 10.45
structural constituent of ribosome 1.984 9.6
microtubule binding 1.793 6.72
tubulin binding 1.742 5.95
Cellular Component IC (bits) H-Score
ribosomal subunit 2.011 15.65
microtubule cytoskeleton 1.341 12.11
spindle 1.789 12.11
cytosol 1.301 9.94
ribonucleoprotein complex 1.414 6.9
microtubule 1.95 6.85
cytosolic ribosome 2.218 4.84

Protein sequence

External link(s) P62269
Sequence length 152
Comment (sp|P62269|RS18_HUMAN) Ke-3 KW=Complete proteome; Reference proteome OX=9606 OS=Homo sapiens (Human). GN=RPS18 OC=Catarrhini; Hominidae; Homo.
Sequence
MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT
EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH
RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK
Download sequence
Identical sequences A5JST6 B5FXB5 F7I089 G1TPG3 G3QUM7 G3VXJ6 G7N7R0 H0WTR0 H2PXT1 H2RE42 J3S0S0 K7FFY7 L9L485 P62269 P62270 P62271 P62272 Q3T0R1 Q561N5 Q5TJE9 T1DJ02 U3FW44
ENSEEUP00000009377 ENSDORP00000012996 ENSPSIP00000006947 ENSSHAP00000007901 ENSSSCP00000001631 ENSP00000211372 ENSP00000393241 ENSP00000403175 ENSP00000412583 ENSP00000416110 ENSNLEP00000008324 ENSDORP00000012996 ENSMEUP00000015328 ENSSSCP00000001631 10090.ENSMUSP00000008812 10116.ENSRNOP00000030371 10116.ENSRNOP00000047371 9361.ENSDNOP00000009369 9598.ENSPTRP00000030810 9600.ENSPPYP00000023575 9606.ENSP00000211372 9606.ENSP00000393241 9606.ENSP00000403175 9606.ENSP00000412583 9606.ENSP00000416110 9615.ENSCAFP00000001357 9823.ENSSSCP00000001631 9913.ENSBTAP00000003431 9986.ENSOCUP00000018898 ENSPPYP00000023575 ENSP00000211372 ENSP00000393241 ENSP00000403175 ENSP00000412583 ENSP00000416110 ENSGGOP00000006432 ENSOGAP00000005559 ENSBTAP00000003431 1vx2.S 1vx5.S 2zkq.m 3j3a.S 4cxc.S 4kzx.S 4kzy.S 4kzz.S 4uq4.S 4uq5.S 4w23.S 4w28.S ENSGGOP00000006432 ENSTBEP00000010997 ENSEEUP00000009377 ENSPVAP00000001796 ENSCJAP00000040308 ENSBTAP00000003431 ENSDNOP00000009369 ENSRNOP00000030371 ENSRNOP00000047371 ENSMUSP00000008812 gi|11968182|ref|NP_072045.1| ENSPPYP00000023575 ENSOCUP00000018898 ENSTBEP00000010997 ENSCAFP00000001357 ENSTTRP00000004046 ENSPCAP00000005425 ENSPCAP00000005425 ENSSHAP00000007901 ENSCAFP00000001357 ENSPTRP00000030810 ENSPTRP00000059777 ENSMUSP00000008812 ENSOCUP00000018898 ENSPTRP00000030810 ENSPTRP00000059777 ENSRNOP00000030371 ENSRNOP00000047371 ENSPVAP00000001796 2zkqm Hs11968182___KOG3311 ENSMEUP00000015328 ENSOGAP00000005559 ENSTTRP00000004046 ENSCJAP00000040308 ENSMUSP00000008812 ENSPSIP00000006947

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