SUPERFAMILY 1.75 HMM library and genome assignments server

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NAC domain superfamily domain assignments
in
Saccharomyces paradoxus MIT

Network of domain occurrence in all genomes



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Select to display   Genome       Domains   Proteins
No Yes ALL   41322 41322
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Selaginella moellendorffii   40 40
No Yes Pinus taeda Loblolly pine 151 142
No Yes Picea abies Norway spruce 69 68
No Yes Eucalyptus grandis v201 Rose gum 205 205
No Yes Theobroma cacao B97-61/B2 v1 Cacao 116 115
No Yes Gossypium raimondii v221   267 266
No Yes Citrus clementina v165   159 159
No Yes Citrus sinensis v154 Sweet orange 147 145
No Yes Thellungiella halophila v173   123 122
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 210 205
No Yes Capsella rubella v183   125 119
No Yes Arabidopsis lyrata Lyrate rockcress 130 123
No Yes Arabidopsis thaliana 10 Thale cress 147 140
No Yes Carica papaya Papaya 85 85
No Yes Medicago truncatula Barrel medic 127 126
No Yes Phaseolus vulgaris v186 French bean 105 105
No Yes Glycine max v109 Soybean 192 192
No Yes Cucumis sativus v122 Cucumber 103 102
No Yes Fragaria vesca Wild strawberry 140 136
No Yes Malus domestica v196 Apple 266 259
No Yes Prunus persica v139 Peach 116 115
No Yes Linum usitatissimum v200 Flax 194 193
No Yes Manihot esculenta v147 Cassava 132 132
No Yes Populus trichocarpa v156 Black cottonwood 184 184
No Yes Vitis vinifera Wine grape 72 71
No Yes Mimulus guttatus v140 Spotted monkey flower 115 114
No Yes Solanum lycopersicum v.2.3 Tomato 102 102
No Yes Solanum tuberosum Potato 144 143
No Yes Actinidia chinensis Hongyang   175 171
No Yes Aquilegia coerulea v195   86 86
No Yes Triticum urartu 22   106 105
No Yes Triticum aestivum 22 Bread wheat 258 256
No Yes Aegilops tauschii 22   124 118
No Yes Brachypodium distachyon Stiff brome 115 113
No Yes Oryza barthii 22 African wild rice 151 148
No Yes Oryza meridionalis 22   151 147
No Yes Oryza glumaepatula 22   169 166
No Yes Oryza glaberrima African rice 115 114
No Yes Oryza punctata 22   159 153
No Yes Oryza nivara 22   181 177
No Yes Oryza brachyantha 22 Malo sina 125 123
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 179 178
No Yes Oryza sativa v193 Rice 176 175
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 130 127
No Yes Panicum virgatum v202 Switchgrass 260 255
No Yes Setaria italica v164 Foxtail millet 153 149
No Yes Zea mays subsp. mays Maize 200 199
No Yes Zea mays v181 Maize 221 219
No Yes Sorghum bicolor Sorghum 128 125
No Yes Musa balbisiana Balbis banana 189 184
No Yes Musa acuminata 22 Wild Malaysian banana 174 172
No Yes Amborella trichopoda 22   47 47
No Yes Physcomitrella patens   32 32
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 107 106
No Yes Hordeum vulgare 22 Domesticated barley 152 152
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 177 174
No Yes Picea sitchensis (Incomplete) Sitka spruce 7 7
No Yes Lotus japonicus (Early assembly)   116 114
No Yes Malus x domestica (Duplicate) Apple 266 259
No Yes Ricinus communis (Early assembly) Castor bean 96 96
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   228 222
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 101 101
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 102 102
No Yes Phoenix dactylifera (Early draft) Date palm 67 65
No Yes Arabidopsis thaliana 10 Thale cress 121 114
No Yes Endophytic microbiome from Rice (meta-genome)   4 4
No Yes NCBI 2017_08 genome   12235 12120
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1069 1047
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   14877 14676
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   15 15
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   21 21
No Yes TargetDB (Targets)   40 39

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