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TSP type-3 repeat superfamily domain assignments
in
Tursiops truncatus 76_1

Assignment details

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Tursiops truncatus 76_1 has 15 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTTRP00000000028   4.05e-37   806-927   TSP type-3 repeat  
  0.000000000000068   738-808   TSP type-3 repeat  
  0.00000000000314   665-749   TSP type-3 repeat  
ENSTTRP00000001663   1.23e-34   588-713   TSP type-3 repeat  
  4.32e-16   519-590   TSP type-3 repeat  
  0.0000000000589   470-531   TSP type-3 repeat  
ENSTTRP00000003604   8.24e-36   813-935   TSP type-3 repeat  
  4.05e-17   744-815   TSP type-3 repeat  
  0.00000000000000968   696-756   TSP type-3 repeat  
ENSTTRP00000008956   2.75e-34   597-722   TSP type-3 repeat  
  3.01e-19   515-599   TSP type-3 repeat  
  0.000000000085   446-540   TSP type-3 repeat  
ENSTTRP00000009970   9.02e-35   405-526   TSP type-3 repeat  
  0.00000000000000798   339-407   TSP type-3 repeat  
  0.0000000000000262   265-348   TSP type-3 repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   27641 27641
No Yes Homo sapiens 76_38 Human 36 13
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 14 5
No Yes Gorilla gorilla 76_3.1 Western gorilla 14 5
No Yes Pongo abelii 76_2 Sumatran orangutan 15 5
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 14 5
No Yes Papio anubis 76 Olive baboon 15 5
No Yes Macaca mulatta 76_1 Rhesus monkey 17 6
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 34 13
No Yes Otolemur garnettii 76_3 Small-eared galago 15 5
No Yes Microcebus murinus 76_1 Gray mouse lemur 10 4
No Yes Rattus norvegicus 76_5.0 Norway rat 15 5
No Yes Mus musculus 76_38 House mouse 18 7
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 15 5
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 11 5
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 15 5
No Yes Cavia porcellus 76_3 Domestic guinea pig 14 5
No Yes Oryctolagus cuniculus 76_2 Rabbit 12 4
No Yes Ochotona princeps 76 American pika 9 5
No Yes Tupaia belangeri 76 Northern tree shrew 11 4
No Yes Sus scrofa 76_10.2 Pig 21 8
No Yes Bos taurus 76_3.1 Cattle 15 5
No Yes Ovis aries 76_3.1 Sheep 14 6
No Yes Vicugna pacos 76_1 Alpaca 5 2
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 15 5
No Yes Mustela putorius furo 76_1.0 Domestic ferret 15 5
No Yes Ailuropoda melanoleuca 76_1 Giant panda 17 6
No Yes Canis familiaris 76_3.1 Dog 18 6
No Yes Felis catus 76_6.2 Domestic cat 15 5
No Yes Equus caballus 76_2 Horse 15 5
No Yes Myotis lucifugus 76_2.0 Little brown bat 15 5
No Yes Pteropus vampyrus 76_1 Large flying fox 11 5
No Yes Sorex araneus 76_1 European shrew 11 4
No Yes Erinaceus europaeus 76 Western European hedgehog 11 4
No Yes Procavia capensis 76_1 Cape rock hyrax 14 5
No Yes Loxodonta africana 76_3 African savanna elephant 21 7
No Yes Echinops telfairi 76 Small Madagascar hedgehog 11 4
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 12 4
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 7 3
No Yes Macropus eugenii 76_1.0 Tammar wallaby 11 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 18 6
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 15 5
No Yes Ornithorhynchus anatinus 76_5 Platypus 8 4
No Yes Saccoglossus kowalevskii v3.0   14 4
No Yes Petromyzon marinus 76_7.0 Sea lamprey 9 4
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 15 6
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 15 5
No Yes Meleagris gallopavo 76_2 Turkey 11 4
No Yes Gallus gallus 76_4 Chicken 12 4
No Yes Anas platyrhynchos 76_1.0 Mallard 12 5
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 21 8
No Yes Anolis carolinensis 76_2.0 Green anole 14 5
No Yes Xenopus laevis African clawed frog 36 12
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 12 5
No Yes Latimeria chalumnae 76_1 Coelacanth 15 5
No Yes Lepisosteus oculatus 76 Spotted gar 20 7
No Yes Gadus morhua 76_1 Atlantic cod 24 8
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 18 6
No Yes Takifugu rubripes 76_4 Torafugu 63 21
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 27 9
No Yes Oryzias latipes 76_1 Japanese medaka 31 11
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 22 8
No Yes Poecilia formosa 76 Amazon molly 27 9
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 30 10
No Yes Astyanax mexicanus 76 Mexican tetra 23 8
No Yes Danio rerio 76_9 Zebrafish 43 15
No Yes Oikopleura dioica   5 3
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 29 10
No Yes Ciona intestinalis 76 Vase tunicate 11 4
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 17 8
No Yes Octopus bimaculoides 280   5 2
No Yes Crassostrea gigas 22 Pacific oyster 5 2
No Yes Lottia gigantea Owl limpet 3 1
No Yes Helobdella robusta   4 3
No Yes Capitella sp. I   10 4
No Yes Danaus plexippus OGS1.0 Monarch butterfly 3 1
No Yes Heliconius melpomene Postman butterfly 3 1
No Yes Bombyx mori Domestic silkworm 3 1
No Yes Nasonia vitripennis Jewel wasp 3 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 6 2
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 3 1
No Yes Linepithema humile v1.1 Argentine ant 3 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 3 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 3 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 3 1
No Yes Atta cephalotes v1.1   3 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 3 1
No Yes Lucilia cuprina Australian sheep blowfly 10 2
No Yes Drosophila grimshawi 1.3   4 2
No Yes Drosophila willistoni 1.3   4 2
No Yes Drosophila pseudoobscura 2.13   3 1
No Yes Drosophila persimilis 1.3   3 1
No Yes Drosophila suzukii   4 2
No Yes Drosophila yakuba 1.3   3 1
No Yes Drosophila simulans 1.3   3 1
No Yes Drosophila sechellia 1.3   3 1
No Yes Drosophila melanogaster 76_5 Fruit fly 8 3
No Yes Drosophila erecta 1.3   3 1
No Yes Drosophila ananassae 1.3   3 1
No Yes Drosophila virilis 1.2   4 2
No Yes Drosophila mojavensis 1.3   3 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 6 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 18 6
No Yes Anopheles darlingi 22 American malaria mosquito 5 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 3 1
No Yes Tribolium castaneum 3.0 Red flour beetle 3 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 3 1
No Yes Rhodnius prolixus 22   3 1
No Yes Acyrthosiphon pisum Pea aphid 3 1
No Yes Daphnia pulex Common water flea 4 2
No Yes Strigamia maritima 22   3 1
No Yes Sarcoptes scabiei   3 1
No Yes Tetranychus urticae Two-spotted spider mite 3 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 3 1
No Yes Hymenolepis microstoma   8 1
No Yes Echinococcus multilocularis   9 1
No Yes Echinococcus granulosus   9 1
No Yes Taenia solium Pork tapeworm 9 1
No Yes Schistosoma mansoni   4 3
No Yes Mnemiopsis leidyi Sea walnut 3 2
No Yes Acropora digitifera v1.0   16 7
No Yes Nematostella vectensis 1.0 Starlet sea anemone 13 6
No Yes Hydra vulgaris   6 2
No Yes Amphimedon queenslandica   2 1
No Yes Trichoplax adhaerens   3 1
No Yes Proterospongia sp. ATCC 50818   3 3
No Yes Monosiga brevicollis   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Phytophthora capsici   1 1
No Yes Symbiodinium minutum clade B1 v1.2   12 3
No Yes Guillardia theta CCMP2712 v1.0   7 1
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Gardnerella vaginalis 409-05   1 1
No Yes Stackebrandtia nassauensis DSM 44728   3 3
No Yes Blastococcus saxobsidens DD2   1 1
No Yes Frankia sp. EAN1pec   1 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Nocardioides sp. JS614   1 1
No Yes Microlunatus phosphovorus NM-1   5 2
No Yes Propionibacterium propionicum F0230a   1 1
No Yes Propionibacterium acnes SK137   3 3
No Yes Verrucosispora maris AB-18-032   2 2
No Yes Micromonospora sp. L5   2 2
No Yes Micromonospora aurantiaca ATCC 27029   2 2
No Yes Actinoplanes sp. N902-109   1 1
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Actinoplanes missouriensis 431   1 1
No Yes Gordonia sp. KTR9   3 3
No Yes Gordonia bronchialis DSM 43247   2 2
No Yes Nocardia cyriacigeorgica GUH-2   1 1
No Yes Mycobacterium abscessus ATCC 19977   2 1
No Yes Mycobacterium sp. JLS   1 1
No Yes Mycobacterium intracellulare ATCC 13950   2 1
No Yes Mycobacterium avium 104   2 1
No Yes Mycobacterium vanbaalenii PYR-1   2 1
No Yes Mycobacterium canettii CIPT 140010059   2 1
No Yes Mycobacterium africanum GM041182   2 1
No Yes Mycobacterium tuberculosis KZN 1435   2 1
No Yes Mycobacterium tuberculosis   2 1
No Yes Mycobacterium bovis BCG str. Pasteur 1173P2   2 1
No Yes Mycobacterium gilvum PYR-GCK   1 1
No Yes Mycobacterium chubuense NBB4   2 1
No Yes Mycobacterium marinum M   2 1
No Yes Mycobacterium smegmatis str. MC2 155   2 1
No Yes Corynebacterium resistens DSM 45100   1 1
No Yes Corynebacterium urealyticum DSM 7109   1 1
No Yes Corynebacterium jeikeium K411   3 1
No Yes Mobiluncus curtisii ATCC 43063   1 1
No Yes Conexibacter woesei DSM 14684   1 1
No Yes Denitrovibrio acetiphilus DSM 12809   1 1
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Herpetosiphon aurantiacus DSM 785   4 4
No Yes Roseiflexus sp. RS-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   5 2
No Yes Chloroflexus sp. Y-400-fl   1 1
No Yes Chloroflexus aggregans DSM 9485   5 2
No Yes Chloroflexus aurantiacus J-10-fl   1 1
No Yes Fibrobacter succinogenes subsp. succinogenes S85   10 4
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Ignavibacterium album JCM 16511   6 5
No Yes Belliella baltica DSM 15883   1 1
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Marivirga tractuosa DSM 4126   2 2
No Yes Fibrella aestuarina   1 1
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Cytophaga hutchinsonii ATCC 33406   2 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Runella slithyformis DSM 19594   6 2
No Yes Paludibacter propionicigenes WB4   4 2
No Yes Niastella koreensis GR20-10   4 4
No Yes Chitinophaga pinensis DSM 2588   2 2
No Yes Haliscomenobacter hydrossis DSM 1100   23 6
No Yes Saprospira grandis str. Lewin   5 4
No Yes Solitalea canadensis DSM 3403   2 2
No Yes Pedobacter saltans DSM 12145   4 4
No Yes Pedobacter heparinus DSM 2366   2 2
No Yes Sphingobacterium sp. 21   2 2
No Yes Fluviicola taffensis DSM 16823   2 2
No Yes Owenweeksia hongkongensis DSM 17368   2 2
No Yes Zunongwangia profunda SM-A87   2 1
No Yes Krokinobacter sp. 4H-3-7-5   5 5
No Yes Gramella forsetii KT0803   3 3
No Yes Lacinutrix sp. 5H-3-7-4   4 4
No Yes Maribacter sp. HTCC2170   7 5
No Yes Robiginitalea biformata HTCC2501   12 7
No Yes Croceibacter atlanticus HTCC2559   4 4
No Yes Aequorivita sublithincola DSM 14238   2 2
No Yes Zobellia galactanivorans   12 8
No Yes Muricauda ruestringensis DSM 13258   5 3
No Yes Cellulophaga algicola DSM 14237   12 6
No Yes Cellulophaga lytica DSM 7489   8 6
No Yes Flavobacteriaceae bacterium 3519-10   3 3
No Yes Polaribacter sp. MED152   5 4
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   4 4
No Yes Ornithobacterium rhinotracheale DSM 15997   2 2
No Yes Capnocytophaga canimorsus Cc5   3 2
No Yes Capnocytophaga ochracea DSM 7271   4 2
No Yes Weeksella virosa DSM 16922   3 3
No Yes Flavobacterium indicum GPTSA100-9   2 2
No Yes Flavobacterium psychrophilum JIP02/86   3 2
No Yes Flavobacterium branchiophilum FL-15   2 2
No Yes Flavobacterium columnare ATCC 49512   3 3
No Yes Flavobacterium johnsoniae UW101   7 4
No Yes Blattabacterium sp. (Nauphoeta cinerea)   1 1
No Yes Blattabacterium sp. (Blattella germanica) str. Bge   1 1
No Yes Opitutus terrae PB90-1   1 1
No Yes Candidatus Methylomirabilis oxyfera   1 1
No Yes candidate division SR1 bacterium RAAC1_SR1_1   1 1
No Yes Candidatus Saccharibacteria bacterium RAAC3_TM7_1   1 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Clostridium thermocellum ATCC 27405   2 1
No Yes Symbiobacterium thermophilum IAM 14863   1 1
No Yes Finegoldia magna ATCC 29328   11 1
No Yes Eubacterium rectale M104/1   2 1
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Clostridium cellulovorans 743B   1 1
No Yes Clostridium botulinum A str. ATCC 3502   1 1
No Yes Caldicellulosiruptor obsidiansis OB47   1 1
No Yes Caldicellulosiruptor kronotskyensis 2002   1 1
No Yes Caldicellulosiruptor lactoaceticus 6A   3 2
No Yes Caldicellulosiruptor kristjanssonii 177R1B   1 1
No Yes Caldicellulosiruptor saccharolyticus DSM 8903   1 1
No Yes Caldicellulosiruptor bescii DSM 6725   3 3
No Yes Streptococcus pasteurianus ATCC 43144   1 1
No Yes Streptococcus infantarius subsp. infantarius CJ18   2 1
No Yes Streptococcus macedonicus ACA-DC 198   1 1
No Yes Nautilia profundicola AmH   1 1
No Yes Sulfurospirillum deleyianum DSM 6946   1 1
No Yes Sulfurospirillum barnesii SES-3   1 1
No Yes Arcobacter sp. L   2 1
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Arcobacter butzleri RM4018   3 2
No Yes Campylobacter curvus 525.92   1 1
No Yes Campylobacter concisus 13826   1 1
No Yes Campylobacter sp. 03-427   1 1
No Yes Campylobacter fetus subsp. fetus 82-40   1 1
No Yes uncultured Sulfuricurvum sp. RIFRC-1   2 2
No Yes Sulfuricurvum kujiense DSM 16994   2 2
No Yes Sulfurimonas denitrificans DSM 1251   1 1
No Yes Wolinella succinogenes DSM 1740   1 1
No Yes Sulfurovum sp. NBC37-1   1 1
No Yes Desulfobacca acetoxidans DSM 11109   1 1
No Yes Syntrophus aciditrophicus SB   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Desulfatibacillum alkenivorans AK-01   10 7
No Yes Desulfobacterium autotrophicum HRM2   1 1
No Yes Desulfococcus oleovorans Hxd3   4 4
No Yes Desulfohalobium retbaense DSM 5692   1 1
No Yes Desulfomicrobium baculatum DSM 4028   2 2
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Pelobacter carbinolicus DSM 2380   3 3
No Yes Geobacter daltonii FRC-32   1 1
No Yes Geobacter sp. M21   1 1
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Haliangium ochraceum DSM 14365   24 16
No Yes Sorangium cellulosum 'So ce 56'   46 27
No Yes Anaeromyxobacter sp. Fw109-5   6 5
No Yes Anaeromyxobacter dehalogenans 2CP-1   3 2
No Yes Stigmatella aurantiaca DW4/3-1   18 13
No Yes Corallococcus coralloides DSM 2259   14 11
No Yes Myxococcus xanthus DK 1622   16 13
No Yes Myxococcus fulvus HW-1   17 14
No Yes Neisseria meningitidis FAM18   1 1
No Yes Thiobacillus denitrificans ATCC 25259   2 2
No Yes Ramlibacter tataouinensis TTB310   1 1
No Yes Polaromonas sp. JS666   1 1
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Variovorax paradoxus S110   1 1
No Yes Rhodoferax ferrireducens T118   1 1
No Yes Acidovorax sp. KKS102   2 2
No Yes Herminiimonas arsenicoxydans   1 1
No Yes Magnetococcus marinus MC-1   2 1
No Yes Gallibacterium anatis UMN179   2 2
No Yes Oceanimonas sp. GK1   1 1
No Yes Aliivibrio salmonicida LFI1238   2 1
No Yes Vibrio harveyi ATCC BAA-1116   2 2
No Yes Vibrio parahaemolyticus RIMD 2210633   1 1
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio anguillarum 775   2 1
No Yes Vibrio splendidus LGP32   1 1
No Yes Vibrio furnissii NCTC 11218   3 2
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Psychromonas ingrahamii 37   4 2
No Yes Ferrimonas balearica DSM 9799   5 2
No Yes Shewanella piezotolerans WP3   3 3
No Yes Shewanella loihica PV-4   2 2
No Yes Shewanella halifaxensis HAW-EB4   2 2
No Yes Shewanella sediminis HAW-EB3   2 2
No Yes Shewanella denitrificans OS217   3 3
No Yes Shewanella pealeana ATCC 700345   4 4
No Yes Shewanella oneidensis MR-1   2 2
No Yes Shewanella baltica OS185   2 2
No Yes Shewanella woodyi ATCC 51908   5 3
No Yes Shewanella sp. MR-4   3 3
No Yes Shewanella amazonensis SB2B   11 3
No Yes Shewanella violacea DSS12   10 8
No Yes Shewanella frigidimarina NCIMB 400   3 3
No Yes Shewanella putrefaciens CN-32   2 2
No Yes Colwellia psychrerythraea 34H   12 4
No Yes Pseudoalteromonas atlantica T6c   3 3
No Yes Teredinibacter turnerae T7901   13 5
No Yes Saccharophagus degradans 2-40   16 6
No Yes Glaciecola sp. 4H-3-7+YE-5   2 2
No Yes Glaciecola nitratireducens FR1064   5 3
No Yes Marinobacter adhaerens HP15   1 1
No Yes Marinobacter sp. BSs20148   2 2
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   1 1
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Alteromonas sp. SN2   4 4
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Hahella chejuensis KCTC 2396   5 3
No Yes Kangiella koreensis DSM 16069   1 1
No Yes Alcanivorax borkumensis SK2   7 4
No Yes Marinomonas mediterranea MMB-1   2 1
No Yes Chromohalobacter salexigens DSM 3043   1 1
No Yes Halomonas elongata DSM 2581   1 1
No Yes Methylomicrobium alcaliphilum   2 2
No Yes Methylomonas methanica MC09   3 3
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Rhodanobacter denitrificans   1 1
No Yes Frateuria aurantia DSM 6220   2 2
No Yes Stenotrophomonas maltophilia K279a   1 1
No Yes Xylella fastidiosa M23   4 4
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Nitrosococcus watsonii C-113   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes gamma proteobacterium HdN1   3 2
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   3 3
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   3 3
No Yes Pseudomonas entomophila L48   3 3
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas putida F1   3 3
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas mendocina ymp   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Pseudomonas sp. VLB120   3 3
No Yes Cellvibrio japonicus Ueda107   16 3
No Yes Psychrobacter sp. G   3 3
No Yes Psychrobacter sp. PRwf-1   2 2
No Yes Psychrobacter arcticus 273-4   1 1
No Yes Psychrobacter cryohalolentis K5   5 5
No Yes Moraxella catarrhalis RH4   1 1
No Yes Methylophaga sp. JAM1   1 1
No Yes Cycloclasticus sp. P1   2 2
No Yes Thiomicrospira crunogena XCL-2   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Cenarchaeum symbiosum A   20 4
No Yes Candidatus Nitrosopumilus sp. AR2   21 5
No Yes Nitrosopumilus maritimus SCM1   13 4
No Yes Methanohalobium evestigatum Z-7303   2 1
No Yes Methanoculleus marisnigri JR1   1 1
No Yes Archaeoglobus veneficus SNP6   1 1
No Yes Thermococcus kodakarensis KOD1   4 2
No Yes Salinarchaeum sp. Harcht-Bsk1   2 2
No Yes Halomicrobium mukohataei DSM 12286   4 3
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Natrinema sp. J7-2   2 2
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Haloferax mediterranei ATCC 33500   2 2
No Yes Haloferax volcanii DS2   1 1
No Yes Halobacterium salinarum R1   1 1
No Yes Halobacterium sp. NRC-1   1 1
No Yes Haloarcula hispanica ATCC 33960   4 3
No Yes Haloarcula marismortui ATCC 43049   3 3
No Yes Aciduliprofundum boonei T469   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 23 8
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 8 3
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 3 1
No Yes Gardnerella vaginalis HMP9231   1 1
No Yes Gardnerella vaginalis ATCC 14019   1 1
No Yes Bifidobacterium thermophilum RBL67   1 1
No Yes Saccharothrix espanaensis DSM 44229   2 2
No Yes Propionibacterium avidum 44067   1 1
No Yes Propionibacterium acidipropionici ATCC 4875   3 3
No Yes Propionibacterium acnes C1   3 3
No Yes Propionibacterium acnes TypeIA2 P.acn31   2 2
No Yes Propionibacterium acnes TypeIA2 P.acn17   3 3
No Yes Propionibacterium acnes TypeIA2 P.acn33   3 3
No Yes Propionibacterium acnes ATCC 11828   2 2
No Yes Propionibacterium acnes 6609   1 1
No Yes Propionibacterium acnes 266   3 3
No Yes Propionibacterium acnes KPA171202   3 3
No Yes Actinoplanes friuliensis DSM 7358   1 1
No Yes Mycobacterium sp. MOTT36Y   2 1
No Yes Mycobacterium sp. JDM601   2 1
No Yes Mycobacterium abscessus subsp. bolletii 50594   2 1
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium yongonense 05-1390   2 1
No Yes Mycobacterium indicus pranii MTCC 9506   2 1
No Yes Mycobacterium intracellulare MOTT-64   2 1
No Yes Mycobacterium intracellulare MOTT-02   2 1
No Yes Mycobacterium avium subsp. paratuberculosis MAP4   2 1
No Yes Mycobacterium avium subsp. paratuberculosis K-10   2 1
No Yes Mycobacterium canettii CIPT 140070017   2 1
No Yes Mycobacterium canettii CIPT 140060008   2 1
No Yes Mycobacterium canettii CIPT 140070008   2 1
No Yes Mycobacterium canettii CIPT 140070010   2 1
No Yes Mycobacterium tuberculosis EAI5/NITR206   2 1
No Yes Mycobacterium tuberculosis EAI5   2 1
No Yes Mycobacterium tuberculosis CAS/NITR204   1 1
No Yes Mycobacterium tuberculosis str. Beijing/NITR203   2 1
No Yes Mycobacterium tuberculosis UT205   2 1
No Yes Mycobacterium tuberculosis RGTB423   2 1
No Yes Mycobacterium tuberculosis RGTB327   2 1
No Yes Mycobacterium tuberculosis CTRI-2   2 1
No Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801   2 1
No Yes Mycobacterium tuberculosis KZN 605   2 1
No Yes Mycobacterium tuberculosis KZN 4207   2 1
No Yes Mycobacterium tuberculosis CCDC5180   2 1
No Yes Mycobacterium tuberculosis CCDC5079   2 1
No Yes Mycobacterium tuberculosis CCDC5079   2 1
No Yes Mycobacterium tuberculosis H37Ra   2 1
No Yes Mycobacterium tuberculosis str. Haarlem/NITR202   1 1
No Yes Mycobacterium tuberculosis str. Haarlem   2 1
No Yes Mycobacterium tuberculosis F11   2 1
No Yes Mycobacterium tuberculosis H37Rv   2 1
No Yes Mycobacterium tuberculosis CDC1551   2 1
No Yes Mycobacterium bovis AF2122/97   2 1
No Yes Mycobacterium bovis BCG str. Korea 1168P   2 1
No Yes Mycobacterium bovis BCG str. Mexico   2 1
No Yes Mycobacterium bovis BCG str. Tokyo 172   2 1
No Yes Mycobacterium gilvum Spyr1   1 1
No Yes Mycobacterium smegmatis str. MC2 155   2 1
No Yes Mycobacterium kansasii ATCC 12478   2 1
No Yes Fibrobacter succinogenes subsp. succinogenes S85   10 4
No Yes Echinicola vietnamensis DSM 17526   3 2
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Nonlabens dokdonensis DSW-6   5 3
No Yes Psychroflexus torquis ATCC 700755   4 3
No Yes Riemerella anatipestifer RA-CH-2   4 4
No Yes Riemerella anatipestifer RA-CH-1   3 3
No Yes Riemerella anatipestifer RA-GD   4 4
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   4 4
No Yes Blattabacterium sp. (Blaberus giganteus)   1 1
No Yes Blattabacterium sp. (Blatta orientalis) Blattabacterium sp. (Blatta orientalis) str. Tarazona   1 1
No Yes Blattabacterium sp. (Periplaneta americana) str. BPLAN   1 1
No Yes Blattabacterium sp. (Panesthia angustipennis spadica) Blattabacterium sp. (Panesthia angustipennis spadica) str. BPAA   1 1
No Yes Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu   1 1
No Yes Blattabacterium sp. (Mastotermes darwiniensis) str. MADAR   1 1
No Yes Clostridium thermocellum DSM 1313   2 1
No Yes Ruminococcus champanellensis 18P13   2 1
No Yes Clostridium botulinum H04402 065   1 1
No Yes Clostridium botulinum F str. 230613   1 1
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum Ba4 str. 657   1 1
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   1 1
No Yes Streptococcus agalactiae 09mas018883   3 2
No Yes Streptococcus suis T15   2 2
No Yes Streptococcus suis D9   1 1
No Yes Streptococcus suis SS12   1 1
No Yes Streptococcus suis D12   1 1
No Yes Streptococcus suis JS14   1 1
No Yes Streptococcus suis BM407   2 2
No Yes Streptococcus suis SC84   1 1
No Yes Streptococcus suis 98HAH33   1 1
No Yes Streptococcus suis 05ZYH33   1 1
No Yes Exiguobacterium antarcticum B7   1 1
No Yes Geobacillus sp. C56-T3   1 1
No Yes Geobacillus sp. Y412MC52   1 1
No Yes Geobacillus sp. Y412MC61   1 1
No Yes Amphibacillus xylanus NBRC 15112   1 1
No Yes Arcobacter butzleri 7h1h   3 2
No Yes Arcobacter butzleri ED-1   3 2
No Yes Bdellovibrio exovorus JSS   1 1
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Desulfobacula toluolica Tol2   1 1
No Yes Desulfovibrio gigas DSM 1382 = ATCC 19364   2 2
No Yes Geobacter sulfurreducens PCA   2 2
No Yes Sorangium cellulosum So0157-2   47 28
No Yes Anaeromyxobacter sp. K   3 2
No Yes Anaeromyxobacter dehalogenans 2CP-C   3 2
No Yes Myxococcus stipitatus DSM 14675   13 12
No Yes Neisseria meningitidis M01-240355   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Vibrio sp. EJY3   3 2
No Yes Vibrio parahaemolyticus BB22OP   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   1 1
No Yes Vibrio anguillarum Listonella anguillarum M3   2 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Vibrio vulnificus CMCP6   2 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Vibrio cholerae M66-2   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Vibrio cholerae IEC224   1 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   1 1
No Yes Shewanella sp. W3-18-1   2 2
No Yes Shewanella sp. ANA-3   2 2
No Yes Shewanella baltica BA175   2 2
No Yes Shewanella baltica OS678   2 2
No Yes Shewanella baltica OS117   2 2
No Yes Shewanella baltica OS223   2 2
No Yes Shewanella baltica OS195   2 2
No Yes Shewanella baltica OS155   2 2
No Yes Shewanella sp. MR-7   3 3
No Yes Shewanella putrefaciens 200   2 2
No Yes Glaciecola psychrophila 170   9 2
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   3 3
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   4 4
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   1 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii str. 'English Channel 615'   1 1
No Yes Alteromonas macleodii str. 'English Channel 673'   1 1
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   1 1
No Yes Alteromonas macleodii AltDE1   4 4
No Yes Alteromonas macleodii str. 'Black Sea 11'   1 1
No Yes Alteromonas macleodii ATCC 27126   1 1
No Yes Alcanivorax dieselolei B5   5 4
No Yes Thalassolituus oleivorans MIL-1   20 8
No Yes Stenotrophomonas maltophilia D457   1 1
No Yes Stenotrophomonas maltophilia JV3   1 1
No Yes Stenotrophomonas maltophilia R551-3   1 1
No Yes Xylella fastidiosa subsp. fastidiosa GB514   4 4
No Yes Xylella fastidiosa M12   3 3
No Yes Xylella fastidiosa Temecula1   4 4
No Yes Xylella fastidiosa 9a5c   4 4
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas oryzae pv. oryzicola BLS256   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   10 7
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas monteilii SB3101   3 3
No Yes Pseudomonas monteilii SB3078   3 3
No Yes Pseudomonas putida H8234   3 3
No Yes Pseudomonas putida HB3267   3 3
No Yes Pseudomonas putida NBRC 14164   3 3
No Yes Pseudomonas putida DOT-T1E   3 3
No Yes Pseudomonas putida S16   3 3
No Yes Pseudomonas putida BIRD-1   3 3
No Yes Pseudomonas putida W619   3 3
No Yes Pseudomonas putida ND6   3 3
No Yes Pseudomonas putida KT2440   3 3
No Yes Pseudomonas putida GB-1   3 3
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas fluorescens F113   3 3
No Yes Pseudomonas fluorescens R124   2 2
No Yes Pseudomonas fluorescens Pf0-1   3 3
No Yes Pseudomonas resinovorans NBRC 106553   3 3
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   2 2
No Yes Pseudomonas aeruginosa PA1   2 2
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Methylophaga sp. JAM7   1 1
No Yes Cycloclasticus zancles 7-ME   2 2
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   16 2
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   20 7
No Yes Methanolobus psychrophilus R15   4 1
No Yes Thermococcus sp. AM4   2 2
No Yes Thermococcus sp. CL1   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Halovivax ruber XH-70   1 1
No Yes Halorhabdus tiamatea SARL4B   1 1
No Yes Natronomonas moolapensis 8.8.11   1 1
No Yes Haloarcula hispanica N601   5 3
No Yes Homo sapiens (NCBI version) Human 15 5
No Yes Homo sapiens 75_37 (old version GRC) Human 31 12
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 15 5
No Yes Mycobacterium tuberculosis H37Rv (Duplicate of ex)   2 1
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   2 2
No Yes Homo sapiens 69_37 Human 15 5
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 12 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 14 5
No Yes Pongo abelii 69_2 Sumatran orangutan 12 4
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 14 5
No Yes Macaca mulatta 69_1 Rhesus monkey 15 5
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 15 5
No Yes Otolemur garnettii 69_3 Small-eared galago 15 5
No Yes Microcebus murinus 69_1 Gray mouse lemur 10 4
No Yes Rattus norvegicus 69_3.4 Norway rat 9 3
No Yes Mus musculus 69_38 House mouse 15 5
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 15 5
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 11 5
No Yes Cavia porcellus 69_3 Domestic guinea pig 14 5
No Yes Oryctolagus cuniculus 69_2 Rabbit 12 4
No Yes Ochotona princeps 69 American pika 9 5
No Yes Tupaia belangeri 69 Northern tree shrew 11 4
No Yes Sus scrofa 69_10.2 Pig 18 7
No Yes Bos taurus 69_3.1 Cattle 15 5
No Yes Vicugna pacos 69_1 Alpaca 5 2
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 15 5
No Yes Mustela putorius furo 69_1.0 Domestic ferret 15 5
No Yes Ailuropoda melanoleuca 69_1 Giant panda 15 5
No Yes Canis familiaris 69_3.1 Dog 15 5
No Yes Felis catus 69 Domestic cat 11 5
No Yes Equus caballus 69_2 Horse 15 5
No Yes Myotis lucifugus 69_2.0 Little brown bat 15 5
No Yes Pteropus vampyrus 69_1 Large flying fox 11 5
No Yes Sorex araneus 69_1 European shrew 11 4
No Yes Erinaceus europaeus 69 Western European hedgehog 11 4
No Yes Procavia capensis 69_1 Cape rock hyrax 14 5
No Yes Loxodonta africana 69_3 African savanna elephant 15 5
No Yes Echinops telfairi 69 Small Madagascar hedgehog 11 4
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 7 4
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 7 3
No Yes Macropus eugenii 69_1.0 Tammar wallaby 11 4
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 15 5
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 15 5
No Yes Ornithorhynchus anatinus 69_5 Platypus 8 4
No Yes Petromyzon marinus 69_7.0 Sea lamprey 9 4
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 15 6
No Yes Meleagris gallopavo 69_2 Turkey 11 4
No Yes Gallus gallus 69_2 Chicken 12 4
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 19 7
No Yes Anolis carolinensis 69_2.0 Green anole 14 5
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 12 5
No Yes Latimeria chalumnae 69_1 Coelacanth 15 5
No Yes Gadus morhua 69_1 Atlantic cod 24 8
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 18 6
No Yes Takifugu rubripes 69_4 Torafugu 21 7
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 24 8
No Yes Oryzias latipes 69_1 Japanese medaka 23 8
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 22 8
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 24 8
No Yes Danio rerio 69_9 Zebrafish 28 10
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 11 4
No Yes Ciona intestinalis 69 Vase tunicate 11 4
No Yes Drosophila melanogaster 69_5 Fruit fly 3 1
No Yes 1_050719N (meta-genome)   1 1
No Yes 1_Upper_euphotic (meta-genome)   10 9
No Yes 2_Base_of_chrolophyll_max (meta-genome)   7 5
No Yes 3_050719R (meta-genome)   2 2
No Yes 3_Below_base_of_euphotic (meta-genome)   13 9
No Yes 4_050719Q (meta-genome)   2 2
No Yes 4_Deep_abyss (meta-genome)   11 10
No Yes 5_050719P (meta-genome)   2 2
No Yes 5_Below_upper_mesopelagic (meta-genome)   13 11
No Yes 6_Upper_euphotic (meta-genome)   26 21
No Yes 7_Oxygen_minimum_layer (meta-genome)   10 9
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Bath Hot Springs, filamentous community (meta-genome)   1 1
No Yes Combined (meta-genome)   12 12
No Yes Crater Hills (meta-genome)   3 3
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   4 4
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   4 4
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   42 42
No Yes Dump top (Dump top) (meta-genome)   32 32
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   9 8
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   15 10
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   16 15
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   14 14
No Yes Fungus garden combined (combined) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   10 10
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   8 8
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   3 2
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   6 6
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   8 5
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   8 7
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   11 9
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   7 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   8 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   9 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   11 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   4 4
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   13 13
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   8 8
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   15 14
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   130 108
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   46 36
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   6 4
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   47 40
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   20 18
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   10 9
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   24 24
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   3 3
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   6 6
No Yes Mouse Gut Community lean3 (meta-genome)   1 1
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   39 34
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   10 8
No Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   12 12
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   14 14
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   13 13
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   22 11
No Yes Sludge/US, Jazz Assembly (meta-genome)   3 2
No Yes Sludge/US, Phrap Assembly (meta-genome)   5 4
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   50 45
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   90 86
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   45 45
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   28 26
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   18 18
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   41 41
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   28 25
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1106 588
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   11 11
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   43 41
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   6 6
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2017_06 genome   15389 10073
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   7 7
No Yes Global Ocean Sampling Expedition (GOS)   3807 2775
No Yes NCBI plasmid sequences (Plasmids)   9 7
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   16 6
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   18 8
No Yes TargetDB (Targets)   7 5

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