SUPERFAMILY 1.75 HMM library and genome assignments server

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BAR/IMD domain-like superfamily domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 12 significant domains in 12 proteins.

     

Sequence ID   Evalue   Region   Family  
1i4dA   1.26e-70   3-201   Arfaptin, Rac-binding fragment  
1uruA   5.89e-58   26-235   BAR domain  
1wdzA   1.22e-80   5-234   IMD domain  
1x03A   9.42e-80   16-246   BAR domain  
1x04A   3.66e-68   16-224   BAR domain  
1y2oA   1.64e-86   2-246   IMD domain  
1zwwA   3.14e-78   11-241   BAR domain  
2c08A   6.45e-66   1-198   BAR domain  
2d4cA   2.97e-79   16-250   BAR domain  
2efkA   6.28e-78   8-285   FCH domain  
2eflA   2.62e-88   6-292   FCH domain  
2elbA   1.08e-73   26-322   BAR domain  
 
Weak hits:
1p68A   0.000492   7-78   BAR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   93174 93174
No Yes Homo sapiens 76_38 Human 353 350
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 70 70
No Yes Gorilla gorilla 76_3.1 Western gorilla 87 86
No Yes Pongo abelii 76_2 Sumatran orangutan 70 70
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 75 74
No Yes Papio anubis 76 Olive baboon 79 79
No Yes Macaca mulatta 76_1 Rhesus monkey 118 118
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 187 185
No Yes Otolemur garnettii 76_3 Small-eared galago 70 70
No Yes Microcebus murinus 76_1 Gray mouse lemur 67 60
No Yes Rattus norvegicus 76_5.0 Norway rat 95 95
No Yes Mus musculus 76_38 House mouse 209 209
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 67 63
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 68 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 76 74
No Yes Cavia porcellus 76_3 Domestic guinea pig 70 70
No Yes Oryctolagus cuniculus 76_2 Rabbit 67 66
No Yes Ochotona princeps 76 American pika 70 63
No Yes Tupaia belangeri 76 Northern tree shrew 69 60
No Yes Sus scrofa 76_10.2 Pig 77 77
No Yes Bos taurus 76_3.1 Cattle 81 81
No Yes Ovis aries 76_3.1 Sheep 88 88
No Yes Vicugna pacos 76_1 Alpaca 41 38
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 66 62
No Yes Mustela putorius furo 76_1.0 Domestic ferret 68 68
No Yes Ailuropoda melanoleuca 76_1 Giant panda 82 81
No Yes Canis familiaris 76_3.1 Dog 91 90
No Yes Felis catus 76_6.2 Domestic cat 73 73
No Yes Equus caballus 76_2 Horse 92 89
No Yes Myotis lucifugus 76_2.0 Little brown bat 67 66
No Yes Pteropus vampyrus 76_1 Large flying fox 66 66
No Yes Sorex araneus 76_1 European shrew 54 47
No Yes Erinaceus europaeus 76 Western European hedgehog 61 55
No Yes Procavia capensis 76_1 Cape rock hyrax 80 65
No Yes Loxodonta africana 76_3 African savanna elephant 110 110
No Yes Echinops telfairi 76 Small Madagascar hedgehog 65 58
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 85 84
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 42 38
No Yes Macropus eugenii 76_1.0 Tammar wallaby 75 61
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 86 85
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 72 72
No Yes Ornithorhynchus anatinus 76_5 Platypus 79 76
No Yes Saccoglossus kowalevskii v3.0   78 75
No Yes Petromyzon marinus 76_7.0 Sea lamprey 39 39
No Yes Meleagris gallopavo 76_2 Turkey 70 70
No Yes Gallus gallus 76_4 Chicken 71 71
No Yes Anas platyrhynchos 76_1.0 Mallard 64 64
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 65 64
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 60 60
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 82 82
No Yes Anolis carolinensis 76_2.0 Green anole 69 68
No Yes Xenopus laevis African clawed frog 130 130
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 95 95
No Yes Latimeria chalumnae 76_1 Coelacanth 90 89
No Yes Lepisosteus oculatus 76 Spotted gar 100 99
No Yes Gadus morhua 76_1 Atlantic cod 99 97
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 131 130
No Yes Takifugu rubripes 76_4 Torafugu 375 374
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 122 122
No Yes Oryzias latipes 76_1 Japanese medaka 131 131
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 103 103
No Yes Poecilia formosa 76 Amazon molly 105 104
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 143 143
No Yes Astyanax mexicanus 76 Mexican tetra 106 105
No Yes Danio rerio 76_9 Zebrafish 193 193
No Yes Oikopleura dioica   23 23
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 72 70
No Yes Ciona intestinalis 76 Vase tunicate 35 35
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 36 36
No Yes Adineta vaga   82 82
No Yes Octopus bimaculoides 280   44 44
No Yes Crassostrea gigas 22 Pacific oyster 31 30
No Yes Lottia gigantea Owl limpet 33 32
No Yes Helobdella robusta   47 47
No Yes Capitella sp. I   34 34
No Yes Danaus plexippus OGS1.0 Monarch butterfly 26 26
No Yes Heliconius melpomene Postman butterfly 21 21
No Yes Bombyx mori Domestic silkworm 24 24
No Yes Nasonia vitripennis Jewel wasp 23 23
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 69
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 26 26
No Yes Linepithema humile v1.1 Argentine ant 26 26
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 33 33
No Yes Solenopsis invicta v.2.2.3 Red fire ant 27 27
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 26 26
No Yes Atta cephalotes v1.1   29 29
No Yes Camponotus floridanus v3.3 Florida carpenter ant 25 25
No Yes Lucilia cuprina Australian sheep blowfly 25 25
No Yes Drosophila grimshawi 1.3   21 21
No Yes Drosophila willistoni 1.3   20 20
No Yes Drosophila pseudoobscura 2.13   20 20
No Yes Drosophila persimilis 1.3   23 23
No Yes Drosophila suzukii   25 23
No Yes Drosophila yakuba 1.3   22 22
No Yes Drosophila simulans 1.3   20 20
No Yes Drosophila sechellia 1.3   18 18
No Yes Drosophila melanogaster 76_5 Fruit fly 81 81
No Yes Drosophila erecta 1.3   20 20
No Yes Drosophila ananassae 1.3   20 20
No Yes Drosophila virilis 1.2   21 21
No Yes Drosophila mojavensis 1.3   20 20
No Yes Megaselia scalaris 22   13 13
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 32 31
No Yes Culex pipiens quinquefasciatus Southern house mosquito 32 32
No Yes Anopheles darlingi 22 American malaria mosquito 23 22
No Yes Anopheles gambiae 49_3j African malaria mosquito 30 30
No Yes Tribolium castaneum 3.0 Red flour beetle 26 25
No Yes Pediculus humanus corporis (Early assembly) Human body louse 22 22
No Yes Acyrthosiphon pisum Pea aphid 24 24
No Yes Rhodnius prolixus 22   22 22
No Yes Daphnia pulex Common water flea 30 30
No Yes Strigamia maritima 22   27 27
No Yes Sarcoptes scabiei   20 20
No Yes Tetranychus urticae Two-spotted spider mite 24 23
No Yes Ixodes scapularis (Preliminary) Black-legged tick 25 25
No Yes Pristionchus pacificus   25 25
No Yes Meloidogyne incognita Southern root-knot nematode 13 13
No Yes Meloidogyne hapla   12 12
No Yes Onchocerca volvulus 22   25 25
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 43 43
No Yes Caenorhabditis japonica   22 22
No Yes Caenorhabditis brenneri   28 28
No Yes Caenorhabditis remanei   28 28
No Yes Caenorhabditis elegans 76_235 Roundworm 58 58
No Yes Caenorhabditis briggsae 2   25 25
No Yes Trichinella spiralis 22   30 30
No Yes Hymenolepis microstoma   23 23
No Yes Echinococcus multilocularis   25 25
No Yes Echinococcus granulosus   25 25
No Yes Taenia solium Pork tapeworm 24 24
No Yes Schistosoma mansoni   31 31
No Yes Mnemiopsis leidyi Sea walnut 26 26
No Yes Thelohanellus kitauei   12 12
No Yes Acropora digitifera v1.0   31 30
No Yes Nematostella vectensis 1.0 Starlet sea anemone 36 36
No Yes Hydra vulgaris   33 33
No Yes Amphimedon queenslandica   37 37
No Yes Trichoplax adhaerens   27 27
No Yes Proterospongia sp. ATCC 50818   33 33
No Yes Monosiga brevicollis   29 28
No Yes Sphaeroforma arctica JP610   19 19
No Yes Capsaspora owczarzaki ATCC 30864   39 39
No Yes Conidiobolus coronatus NRRL28638 v1.0   15 15
No Yes Mortierella verticillata NRRL 6337   25 25
No Yes Phycomyces blakesleeanus   35 34
No Yes Rhizopus oryzae RA 99-880   34 34
No Yes Mucor circinelloides   37 36
No Yes Rhizomucor miehei CAU432   34 34
No Yes Malassezia globosa CBS 7966   20 20
No Yes Sporisorium reilianum 22   13 13
No Yes Ustilago maydis   13 13
No Yes Mixia osmundae IAM 14324 v1.0   16 16
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   17 16
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   15 15
No Yes Melampsora laricis-populina   13 13
No Yes Rhodotorula graminis WP1 v1.0   15 15
No Yes Sporobolomyces roseus IAM 13481   10 10
No Yes Microbotryum violaceum 22   14 14
No Yes Wallemia sebi v1.0   12 12
No Yes Sphaerobolus stellatus v1.0   17 17
No Yes Piloderma croceum F 1598 v1.0   13 13
No Yes Serpula lacrymans var. lacrymans S7.9   11 11
No Yes Coniophora puteana   14 13
No Yes Hydnomerulius pinastri v2.0   14 14
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   13 13
No Yes Pisolithus microcarpus 441 v1.0   15 15
No Yes Pisolithus tinctorius Marx 270 v1.0   14 14
No Yes Scleroderma citrinum Foug A v1.0   12 12
No Yes Coprinopsis cinerea okayama7 130 v3   16 16
No Yes Pleurotus ostreatus Oyster mushroom 16 16
No Yes Amanita thiersii Skay4041 v1.0   13 13
No Yes Amanita muscaria Koide v1.0 Fly agaric 13 13
No Yes Galerina marginata v1.0   14 14
No Yes Hebeloma cylindrosporum h7 v2.0   17 17
No Yes Laccaria bicolor S238N-H82   17 17
No Yes Agaricus bisporus var. bisporus   15 14
No Yes Schizophyllum commune   16 16
No Yes Stereum hirsutum FP-91666 SS1 v1.0   12 12
No Yes Heterobasidion annosum   13 13
No Yes Gloeophyllum trabeumv1.0   16 15
No Yes Punctularia strigosozonata v1.0   13 12
No Yes Sebacina vermifera MAFF 305830 v1.0   20 18
No Yes Fomitiporia mediterranea v1.0   13 13
No Yes Tulasnella calospora AL13/4D v1.0   14 14
No Yes Postia placenta   19 19
No Yes Wolfiporia cocos MD-104 SS10 v1.0   16 15
No Yes Fomitopsis pinicolav1.0   14 14
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   14 14
No Yes Phanerochaete chrysosporium RP-78 2.1   12 12
No Yes Dichomitus squalens   16 15
No Yes Trametes versicolor v1.0   14 14
No Yes Tremella mesenterica Witches' butter 13 13
No Yes Daldinia eschscholzii EC12 v1.0   18 18
No Yes Apiospora montagnei NRRL 25634 v1.0   16 16
No Yes Magnaporthe poae ATCC 64411 22   13 13
No Yes Magnaporthe grisea 70-15   17 17
No Yes Podospora anserina   17 17
No Yes Sporotrichum thermophile ATCC 42464   17 17
No Yes Thielavia terrestris NRRL 8126   17 17
No Yes Chaetomium globosum CBS 148.51   16 16
No Yes Neurospora tetrasperma   16 16
No Yes Neurospora discreta FGSC 8579   16 16
No Yes Neurospora crassa OR74A   17 17
No Yes Cryphonectria parasitica Chestnut blight fungus 17 17
No Yes Verticillium albo-atrum VaMs.102   18 16
No Yes Verticillium dahliae VdLs.17   18 18
No Yes Acremonium alcalophilumv 1.0   16 16
No Yes Glomerella graminicola 22   16 16
No Yes Fusarium graminearum   16 16
No Yes Nectria haematococca mpVI   16 16
No Yes Fusarium oxysporum f. sp. lycopersici 4286   16 16
No Yes Fusarium verticillioides 7600   15 15
No Yes Trichoderma asperellum CBS 433.97 v1.0   15 15
No Yes Trichoderma atroviride   15 15
No Yes Trichoderma citrinoviride v1.0   14 14
No Yes Trichoderma reesei 1.2   15 15
No Yes Trichoderma virens Gv29-8   16 16
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   14 14
No Yes Trichoderma harzianum CBS 226.95 v1.0   17 17
No Yes Amorphotheca resinae v1.0 Creosote fungus 16 16
No Yes Botrytis cinerea B05.10   17 17
No Yes Sclerotinia sclerotiorum   17 17
No Yes Blumeria graminis 22   15 15
No Yes Didymella exigua CBS 183.55 v1.0   17 17
No Yes Leptosphaeria maculans 22   17 17
No Yes Setosphaeria turcica v1.0   17 17
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   18 18
No Yes Cochliobolus victoriae FI3 v1.0   18 18
No Yes Cochliobolus carbonum 26-R-13 v1.0   18 18
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 17 17
No Yes Alternaria brassicicola   15 15
No Yes Cochliobolus lunatus m118 v2.0   18 18
No Yes Pyrenophora teres f. teres 22   17 17
No Yes Pyrenophora tritici-repentis   16 16
No Yes Stagonospora nodorum   16 16
No Yes Mycosphaerella graminicola IPO323   15 15
No Yes Zasmidium cellare ATCC 36951 v1.0   16 16
No Yes Dothistroma septosporum   15 15
No Yes Septoria musiva v1.0   16 16
No Yes Mycosphaerella fijiensis CIRAD86   16 16
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   15 15
No Yes Paracoccidioides brasiliensis Pb18   16 16
No Yes Coccidioides posadasii RMSCC 3488   16 16
No Yes Coccidioides immitis RS   16 16
No Yes Ajellomyces dermatitidis SLH14081   15 15
No Yes Histoplasma capsulatum class NAmI strain WU24   12 12
No Yes Microsporum canis CBS 113480   16 16
No Yes Trichophyton equinum CBS 127.97   16 16
No Yes Trichophyton verrucosum HKI 0517   15 15
No Yes Arthroderma benhamiae CBS 112371   15 15
No Yes Trichophyton tonsurans CBS 112818   16 16
No Yes Trichophyton rubrum CBS 118892   14 14
No Yes Uncinocarpus reesii 1704   16 16
No Yes Aspergillus zonatus v1.0   16 16
No Yes Penicillium chrysogenum Wisconsin 54-1255   18 18
No Yes Penicillium chrysogenum v1.0   17 17
No Yes Aspergillus acidus v1.0   16 16
No Yes Aspergillus fumigatus Af293   16 16
No Yes Aspergillus brasiliensis v1.0   17 17
No Yes Aspergillus nidulans FGSC A4   17 17
No Yes Aspergillus sydowii v1.0   17 17
No Yes Aspergillus versicolor v1.0   16 16
No Yes Aspergillus glaucus   16 16
No Yes Aspergillus carbonarius ITEM 5010   16 16
No Yes Neosartorya fischeri NRRL 181   16 16
No Yes Aspergillus terreus NIH2624   15 15
No Yes Aspergillus tubingensis v1.0   16 16
No Yes Aspergillus wentii v1.0   16 16
No Yes Aspergillus oryzae RIB40   16 16
No Yes Aspergillus niger 22   17 17
No Yes Aspergillus niger ATCC 1015   9 9
No Yes Aspergillus flavus NRRL3357   16 16
No Yes Aspergillus clavatus NRRL 1   16 16
No Yes Penicillium marneffei ATCC 18224   18 18
No Yes Tuber melanosporum Mel28 22   15 15
No Yes Tuber melanosporum Vittad Perigord truffle 19 19
No Yes Hansenula polymorpha v2.0   14 14
No Yes Dekkera bruxellensis CBS 2499 v2.0   14 14
No Yes Pichia membranifaciensv1.0   12 12
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   13 13
No Yes Candida dubliniensis CD36   17 17
No Yes Candida tropicalis MYA-3404   15 15
No Yes Candida parapsilosis   15 15
No Yes Candida albicans SC5314   14 14
No Yes Lodderomyces elongisporus NRRL YB-4239   14 14
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   17 17
No Yes Pichia stipitis CBS 6054   16 15
No Yes Candida guilliermondii ATCC 6260   16 16
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   15 14
No Yes Debaromyces hansenii   15 15
No Yes Wickerhamomyces anomalus   16 16
No Yes Pichia pastoris GS115   14 14
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   6 6
No Yes Yarrowia lipolytica CLIB122   14 14
No Yes Candida lusitaniae ATCC 42720   12 12
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   14 14
No Yes Vanderwaltozyma polyspora DSM 70294   18 17
No Yes Candida glabrata CBS138   17 16
No Yes Kluyveromyces thermotolerans CBS 6340   15 15
No Yes Lachancea kluyveri   13 13
No Yes Kluyveromyces waltii   17 16
No Yes Ashbya gossypii ATCC 10895   14 14
No Yes Zygosaccharomyces rouxii   15 14
No Yes Saccharomyces mikatae MIT   17 16
No Yes Saccharomyces paradoxus MIT   15 15
No Yes Saccharomyces cerevisiae 76 Baker's yeast 16 15
No Yes Saccharomyces bayanus MIT   16 15
No Yes Kluyveromyces lactis   11 11
No Yes Schizosaccharomyces cryophilus OY26 22   18 18
No Yes Schizosaccharomyces octosporus yFS286   18 18
No Yes Schizosaccharomyces japonicus yFS275   18 18
No Yes Schizosaccharomyces pombe Fission yeast 19 19
No Yes Catenaria anguillulae PL171 v1.0   18 18
No Yes Allomyces macrogynus ATCC 38327   29 28
No Yes Spizellomyces punctatus DAOM BR117   29 28
No Yes Dictyostelium discoideum   28 28
No Yes Dictyostelium purpureum   28 28
No Yes Entamoeba dispar 1.2   32 32
No Yes Entamoeba invadens 1.2   31 31
No Yes Entamoeba histolytica 1   29 29
No Yes Selaginella moellendorffii   13 13
No Yes Pinus taeda Loblolly pine 5 4
No Yes Picea abies Norway spruce 7 7
No Yes Eucalyptus grandis v201 Rose gum 14 14
No Yes Theobroma cacao B97-61/B2 v1 Cacao 9 9
No Yes Gossypium raimondii v221   43 43
No Yes Citrus clementina v165   22 22
No Yes Citrus sinensis v154 Sweet orange 23 23
No Yes Thellungiella halophila v173   13 13
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 21 20
No Yes Capsella rubella v183   17 17
No Yes Arabidopsis lyrata Lyrate rockcress 12 12
No Yes Arabidopsis thaliana 10 Thale cress 15 15
No Yes Carica papaya Papaya 9 9
No Yes Medicago truncatula Barrel medic 28 28
No Yes Phaseolus vulgaris v186 French bean 20 20
No Yes Glycine max v109 Soybean 37 37
No Yes Cucumis sativus v122 Cucumber 13 13
No Yes Fragaria vesca Wild strawberry 14 14
No Yes Malus domestica v196 Apple 22 21
No Yes Prunus persica v139 Peach 13 13
No Yes Linum usitatissimum v200 Flax 23 23
No Yes Manihot esculenta v147 Cassava 16 16
No Yes Populus trichocarpa v156 Black cottonwood 18 18
No Yes Vitis vinifera Wine grape 12 12
No Yes Mimulus guttatus v140 Spotted monkey flower 13 13
No Yes Solanum lycopersicum v.2.3 Tomato 12 12
No Yes Solanum tuberosum Potato 24 24
No Yes Actinidia chinensis Hongyang   20 19
No Yes Aquilegia coerulea v195   27 27
No Yes Triticum urartu 22   9 9
No Yes Triticum aestivum 22 Bread wheat 34 34
No Yes Aegilops tauschii 22   9 9
No Yes Brachypodium distachyon Stiff brome 18 18
No Yes Oryza barthii 22 African wild rice 13 13
No Yes Oryza meridionalis 22   19 19
No Yes Oryza glumaepatula 22   16 16
No Yes Oryza glaberrima African rice 9 9
No Yes Oryza punctata 22   16 15
No Yes Oryza nivara 22   18 18
No Yes Oryza brachyantha 22 Malo sina 12 12
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 16 16
No Yes Oryza sativa v193 Rice 14 14
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 13 12
No Yes Panicum virgatum v202 Switchgrass 32 32
No Yes Setaria italica v164 Foxtail millet 18 18
No Yes Zea mays subsp. mays Maize 33 33
No Yes Zea mays v181 Maize 40 40
No Yes Sorghum bicolor Sorghum 14 14
No Yes Musa balbisiana Balbis banana 21 20
No Yes Musa acuminata 22 Wild Malaysian banana 20 20
No Yes Amborella trichopoda 22   10 10
No Yes Physcomitrella patens   15 15
No Yes Coccomyxa subellipsoidea sp. C-169 v2   3 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   4 4
No Yes Chlorella variabilis sp. NC64A   5 4
No Yes Chlorella vulgaris   2 2
No Yes Volvox carteri f. nagariensis   6 6
No Yes Volvox carteri v199   7 7
No Yes Chlamydomonas reinhardtii 4.0   5 5
No Yes Ostreococcus sp. RCC809   5 5
No Yes Ostreococcus lucimarinus CCE9901   6 6
No Yes Ostreococcus tauri   4 4
No Yes Bathycoccus prasinos   2 2
No Yes Micromonas sp. RCC299   4 4
No Yes Micromonas pusilla CCMP1545 v3.0   5 5
No Yes Cyanidioschyzon merolae strain 10D 22   5 5
No Yes Cyanidioschyzon merolae   5 5
No Yes Porphyridium purpureum 02_2012   7 7
No Yes Thecamonas trahens ATCC 50062   29 29
No Yes Bigelowiella natans CCMP2755 22   26 24
No Yes Giardia lamblia 2.3   2 2
No Yes Cyanophora paradoxa   9 9
No Yes Leishmania mexicana 2.4   7 7
No Yes Leishmania major strain Friedlin   7 7
No Yes Leishmania infantum JPCM5 2.4   6 6
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   5 5
No Yes Trypanosoma vivax   4 4
No Yes Trypanosoma cruzi strain CL Brener   6 6
No Yes Trypanosoma congolense 2.4   3 3
No Yes Trypanosoma brucei gambiense v4.1   3 3
No Yes Trypanosoma brucei TREU927 v4.1   3 3
No Yes Ectocarpus siliculosus   14 14
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   11 11
No Yes Pythium iwayamai DAOM BR242034 22   13 11
No Yes Pythium arrhenomanes ATCC 12531 22   13 13
No Yes Pythium ultimum v1.7-2   13 12
No Yes Pythium aphanidermatum DAOM BR444 22   13 12
No Yes Pythium irregulare DAOM BR486 22   16 14
No Yes Pythium vexans DAOM BR484 22   13 12
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 15 14
No Yes Phytophthora sojae 1.1   16 15
No Yes Phytophthora infestans T30-4   17 16
No Yes Phytophthora capsici   14 13
No Yes Hyaloperonospora arabidopsidis 22   9 9
No Yes Phaeodactylum tricornutumCCAP 1055/1   5 4
No Yes Fragilariopsis cylindrus   5 5
No Yes Thalassiosira pseudonana CCMP1335   4 4
No Yes Perkinsus marinus ATCC 50983   8 7
No Yes Paramecium tetraurelia   36 36
No Yes Tetrahymena thermophila SB210 1   15 15
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   3 3
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   2 2
No Yes Toxoplasma gondii ME49   2 2
No Yes Toxoplasma gondii GT1   2 2
No Yes Babesia bovis T2Bo   2 2
No Yes Theileria parva   1 1
No Yes Theileria annulata   1 1
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   1 1
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   9 9
No Yes Naegleria gruberi   14 14
No Yes Trichomonas vaginalis   38 38
No Yes Guillardia theta CCMP2712 v1.0   12 12
No Yes Emiliania huxleyi CCMP1516   5 5
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Mycoplasma genitalium G37   1 1
No Yes Arthrobacter arilaitensis Re117   1 1
No Yes Gardnerella vaginalis 409-05   1 1
No Yes Bifidobacterium adolescentis ATCC 15703   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Clostridium acetobutylicum ATCC 824   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Paludibacter propionicigenes WB4   1 1
No Yes Prevotella intermedia 17   1 1
No Yes Muricauda ruestringensis DSM 13258   1 1
No Yes Spirochaeta caldaria DSM 7334   1 1
No Yes Thermotoga thermarum DSM 5069   1 1
No Yes Helicobacter bizzozeronii CIII-1   1 1
No Yes Hippea maritima DSM 10411   1 1
No Yes Babela massiliensis   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Hyphomicrobium denitrificans ATCC 51888   1 1
No Yes Legionella pneumophila str. Corby   1 1
No Yes Candidatus Korarchaeum cryptofilum OPF8   2 2
No Yes Pyrobaculum sp. 1860   1 1
No Yes Methanosaeta concilii GP6   1 1
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 130 130
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 50 50
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 32 32
No Yes Ascaris suum Victoria/Ghent Pig roundworm 29 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 45 45
No Yes Cryptococcus neoformans var. grubii H99   12 12
No Yes Cryptococcus neoformans B-3501A   14 13
No Yes Cryptococcus neoformans JEC21   14 13
No Yes Paracoccidioides brasiliensis Pb01   16 16
No Yes Paracoccidioides brasiliensis Pb03   15 15
No Yes Coccidioides posadasii str. Silveira   16 16
No Yes Coccidioides immitis RMSCC 3703   15 15
No Yes Coccidioides immitis RMSCC 2394   16 16
No Yes Coccidioides immitis H538.4   17 17
No Yes Ajellomyces dermatitidis ER-3   14 14
No Yes Histoplasma capsulatum H143   14 14
No Yes Histoplasma capsulatum H88   15 15
No Yes Histoplasma capsulatum G186AR   15 15
No Yes Aspergillus fumigatus A1163   16 16
No Yes Candida albicans WO-1   14 14
No Yes Saccharomyces cerevisiae UC5   12 11
No Yes Saccharomyces cerevisiae PW5   14 13
No Yes Saccharomyces cerevisiae FL100   10 9
No Yes Saccharomyces cerevisiae CLIB324   6 5
No Yes Saccharomyces cerevisiae CBS7960   12 11
No Yes Saccharomyces cerevisiae YJM269   13 12
No Yes Saccharomyces cerevisiae T7   16 15
No Yes Saccharomyces cerevisiae FostersB   12 12
No Yes Saccharomyces cerevisiae FostersO   11 11
No Yes Saccharomyces cerevisiae VL3   13 13
No Yes Saccharomyces cerevisiae Vin13   12 11
No Yes Saccharomyces cerevisiae LalvinQA23   13 13
No Yes Saccharomyces cerevisiae AWRI796   12 11
No Yes Saccharomyces cerevisiae Sigma1278b   15 14
No Yes Saccharomyces cerevisiae W303   16 15
No Yes Saccharomyces cerevisiae JAY291   16 15
No Yes Saccharomyces cerevisiae AWRI1631   10 9
No Yes Saccharomyces cerevisiae YPS163   3 3
No Yes Saccharomyces cerevisiae M22   4 4
No Yes Saccharomyces cerevisiae T73   8 8
No Yes Saccharomyces cerevisiae CLIB215   14 13
No Yes Saccharomyces cerevisiae Y10   7 6
No Yes Saccharomyces cerevisiae YJM789   16 15
No Yes Saccharomyces cerevisiae YJM789   16 15
No Yes Saccharomyces cerevisiae RM11-1a   16 15
No Yes Saccharomyces cerevisiae RM11-1a   16 15
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 16 15
No Yes Schizosaccharomyces pombe 972h-   19 19
No Yes Batrachochytrium dendrobatidis JEL423   19 19
No Yes Batrachochytrium dendrobatidis JAM81   18 18
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 9 9
No Yes Hordeum vulgare 22 Domesticated barley 25 25
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 14 14
No Yes Trypanosoma brucei Lister 427 v4.1   3 3
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Plasmodium falciparum Dd2   1 1
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Mycoplasma genitalium M2321   1 1
No Yes Mycoplasma genitalium M2288   1 1
No Yes Mycoplasma genitalium M6282   1 1
No Yes Mycoplasma genitalium M6320   1 1
No Yes Clostridium perfringens SM101   1 1
No Yes Clostridium acetobutylicum DSM 1731   1 1
No Yes Clostridium acetobutylicum EA 2018   1 1
No Yes Lactococcus lactis subsp. lactis CV56   1 1
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Helicobacter pylori Gambia94/24   1 1
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Legionella pneumophila 2300/99 Alcoy   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 378 375
No Yes Homo sapiens (NCBI version) Human 127 126
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 69 69
No Yes Heliconius numata (Incomplete)   7 7
No Yes Loa loa v3.3 (Request) Eye worm 26 26
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 31 31
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 27 27
No Yes Moniliophthora perniciosa FA553 (Genome survey)   9 9
No Yes Encephalitozoon intestinalis (endoparasite)   1 1
No Yes Encephalitozoon cuniculi (endoparasite)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   11 10
No Yes Malus x domestica (Duplicate) Apple 22 21
No Yes Ricinus communis (Early assembly) Castor bean 11 11
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   23 22
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 12 12
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 12 12
No Yes Phoenix dactylifera (Early draft) Date palm 11 11
No Yes Homo sapiens 69_37 Human 72 70
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 66 66
No Yes Gorilla gorilla 69_3.1 Western gorilla 66 65
No Yes Pongo abelii 69_2 Sumatran orangutan 66 66
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 66 65
No Yes Macaca mulatta 69_1 Rhesus monkey 66 66
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 71 70
No Yes Otolemur garnettii 69_3 Small-eared galago 65 65
No Yes Microcebus murinus 69_1 Gray mouse lemur 67 60
No Yes Rattus norvegicus 69_3.4 Norway rat 71 71
No Yes Mus musculus 69_38 House mouse 70 70
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 67 63
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 66 66
No Yes Cavia porcellus 69_3 Domestic guinea pig 68 68
No Yes Oryctolagus cuniculus 69_2 Rabbit 64 63
No Yes Ochotona princeps 69 American pika 70 63
No Yes Tupaia belangeri 69 Northern tree shrew 69 60
No Yes Sus scrofa 69_10.2 Pig 69 69
No Yes Bos taurus 69_3.1 Cattle 69 69
No Yes Vicugna pacos 69_1 Alpaca 41 38
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 66 62
No Yes Mustela putorius furo 69_1.0 Domestic ferret 68 68
No Yes Ailuropoda melanoleuca 69_1 Giant panda 73 72
No Yes Canis familiaris 69_3.1 Dog 72 71
No Yes Felis catus 69 Domestic cat 66 57
No Yes Equus caballus 69_2 Horse 72 69
No Yes Myotis lucifugus 69_2.0 Little brown bat 66 65
No Yes Pteropus vampyrus 69_1 Large flying fox 66 66
No Yes Sorex araneus 69_1 European shrew 54 47
No Yes Erinaceus europaeus 69 Western European hedgehog 61 55
No Yes Procavia capensis 69_1 Cape rock hyrax 80 65
No Yes Loxodonta africana 69_3 African savanna elephant 73 73
No Yes Echinops telfairi 69 Small Madagascar hedgehog 65 58
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 51 45
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 42 38
No Yes Macropus eugenii 69_1.0 Tammar wallaby 75 61
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 70 69
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 67 67
No Yes Ornithorhynchus anatinus 69_5 Platypus 70 68
No Yes Petromyzon marinus 69_7.0 Sea lamprey 37 37
No Yes Meleagris gallopavo 69_2 Turkey 58 58
No Yes Gallus gallus 69_2 Chicken 63 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 63 62
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 65 65
No Yes Anolis carolinensis 69_2.0 Green anole 66 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 71 71
No Yes Latimeria chalumnae 69_1 Coelacanth 70 69
No Yes Gadus morhua 69_1 Atlantic cod 96 94
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 101 100
No Yes Takifugu rubripes 69_4 Torafugu 102 102
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 93 93
No Yes Oryzias latipes 69_1 Japanese medaka 94 94
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 103 103
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 104 104
No Yes Danio rerio 69_9 Zebrafish 110 110
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 30 29
No Yes Ciona intestinalis 69 Vase tunicate 32 32
No Yes Drosophila melanogaster 69_5 Fruit fly 20 20
No Yes Caenorhabditis elegans 69_215 Roundworm 28 28
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 16 15
No Yes Arabidopsis thaliana 10 Thale cress 11 11
No Yes 2_050719S (meta-genome)   2 2
No Yes 4_050719Q (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   3 3
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   4 4
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   3 3
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   2 2
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   60001 59741
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   262 262
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   3404 3367
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   23 23
No Yes NCBI plasmid sequences (Plasmids)   6 6
No Yes NCBI viral sequences (Viral)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   12 12
No Yes Protein Data Bank (all PDB sequenc)   146 146
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   240 240
No Yes TargetDB (Targets)   168 168
No Yes UniProt viral sequences (Viral)   5 5

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