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YozE-like superfamily domain assignments
in
Lactobacillus amylovorus GRL 1112

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Lactobacillus amylovorus GRL 1112 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|315038206|ref|YP_004031774.1|   1.83e-28   4-73   YozE-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   3099 3099
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Eubacterium limosum KIST612   1 1
No Yes Clostridium cellulovorans 743B   1 1
No Yes Carnobacterium sp. 17-4   2 2
No Yes Aerococcus urinae ACS-120-V-Col10a   1 1
No Yes Tetragenococcus halophilus NBRC 12172   1 1
No Yes Melissococcus plutonius DAT561   1 1
No Yes Enterococcus hirae ATCC 9790   1 1
No Yes Enterococcus faecium Aus0004   1 1
No Yes Enterococcus faecalis 62   1 1
No Yes Weissella koreensis KACC 15510   1 1
No Yes Oenococcus oeni PSU-1   1 1
No Yes Leuconostoc sp. C2   1 1
No Yes Leuconostoc kimchii IMSNU 11154   1 1
No Yes Leuconostoc gasicomitatum LMG 18811   1 1
No Yes Leuconostoc citreum KM20   1 1
No Yes Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293   1 1
No Yes Lactobacillus casei ATCC 334   1 1
No Yes Lactobacillus kefiranofaciens ZW3   1 1
No Yes Lactobacillus crispatus ST1   1 1
No Yes Lactobacillus rhamnosus Lc 705   1 1
No Yes Lactobacillus johnsonii FI9785   1 1
No Yes Lactobacillus sanfranciscensis TMW 1.1304   1 1
No Yes Lactobacillus ruminis ATCC 27782   1 1
No Yes Lactobacillus fermentum IFO 3956   1 1
No Yes Lactobacillus amylovorus GRL1118   1 1
No Yes Lactobacillus sakei subsp. sakei 23K   1 1
No Yes Lactobacillus reuteri DSM 20016   1 1
No Yes Lactobacillus gasseri ATCC 33323   1 1
No Yes Lactobacillus plantarum JDM1   2 2
No Yes Lactobacillus helveticus DPC 4571   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365   1 1
No Yes Lactobacillus buchneri NRRL B-30929   2 2
No Yes Lactobacillus brevis ATCC 367   1 1
No Yes Lactobacillus acidophilus 30SC   1 1
No Yes Pediococcus claussenii ATCC BAA-344   1 1
No Yes Pediococcus pentosaceus ATCC 25745   1 1
No Yes Lactococcus garvieae ATCC 49156   1 1
No Yes Lactococcus lactis subsp. cremoris MG1363   1 1
No Yes Streptococcus gallolyticus UCN34   1 1
No Yes Streptococcus pseudopneumoniae IS7493   1 1
No Yes Streptococcus pasteurianus ATCC 43144   1 1
No Yes Streptococcus equi subsp. equi 4047   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis GGS_124   1 1
No Yes Streptococcus infantarius subsp. infantarius CJ18   1 1
No Yes Streptococcus macedonicus ACA-DC 198   1 1
No Yes Streptococcus mitis B6   1 1
No Yes Streptococcus uberis 0140J   1 1
No Yes Streptococcus parauberis KCTC 11537   1 1
No Yes Streptococcus parasanguinis ATCC 15912   1 1
No Yes Streptococcus pyogenes str. Manfredo   1 1
No Yes Streptococcus pneumoniae P1031   1 1
No Yes Streptococcus agalactiae A909   1 1
No Yes Streptococcus mutans NN2025   1 1
No Yes Streptococcus thermophilus LMD-9   1 1
No Yes Streptococcus suis P1/7   1 1
No Yes Streptococcus sanguinis SK36   1 1
No Yes Streptococcus salivarius 57.I   1 1
No Yes Streptococcus oralis Uo5   1 1
No Yes Streptococcus gordonii str. Challis substr. CH1   1 1
No Yes Listeria welshimeri serovar 6b str. SLCC5334   1 1
No Yes Listeria innocua Clip11262   2 2
No Yes Listeria seeligeri serovar 1/2b str. SLCC3954   1 1
No Yes Listeria monocytogenes serotype 4b str. CLIP 80459   1 1
No Yes Listeria ivanovii subsp. ivanovii PAM 55   1 1
No Yes Solibacillus silvestris StLB046   1 1
No Yes Lysinibacillus sphaericus C3-41   1 1
No Yes Oceanobacillus iheyensis HTE831   1 1
No Yes Geobacillus sp. WCH70   1 1
No Yes Geobacillus thermoleovorans CCB_US3_UF5   1 1
No Yes Geobacillus thermodenitrificans NG80-2   1 1
No Yes Geobacillus kaustophilus HTA426   1 1
No Yes Geobacillus thermoglucosidasius C56-YS93   1 1
No Yes Halobacillus halophilus DSM 2266   1 1
No Yes Bacillus sp. JS   1 1
No Yes Bacillus atrophaeus 1942   1 1
No Yes Bacillus subtilis subsp. subtilis str. 168   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus amyloliquefaciens FZB42   1 1
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus pumilus SAFR-032   1 1
No Yes Bacillus megaterium DSM 319   1 1
No Yes Staphylococcus pseudintermedius HKU10-03   1 1
No Yes Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305   2 2
No Yes Staphylococcus lugdunensis HKU09-01   4 4
No Yes Staphylococcus haemolyticus JCSC1435   3 3
No Yes Staphylococcus epidermidis RP62A   5 5
No Yes Staphylococcus carnosus subsp. carnosus TM300   2 2
No Yes Staphylococcus aureus subsp. aureus JH1   4 4
No Yes Geobacter metallireducens GS-15   1 1
No Yes Sorangium cellulosum 'So ce 56'   1 1
No Yes Methylotenera mobilis JLW8   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Melissococcus plutonius ATCC 35311   1 1
No Yes Enterococcus faecium DO   1 1
No Yes Enterococcus faecalis D32   1 1
No Yes Enterococcus faecalis OG1RF   1 1
No Yes Enterococcus faecalis V583   1 1
No Yes Leuconostoc mesenteroides subsp. mesenteroides J18   1 1
No Yes Lactobacillus casei LC2W   1 1
No Yes Lactobacillus casei BD-II   1 1
No Yes Lactobacillus casei BL23   1 1
No Yes Lactobacillus casei str. Zhang   1 1
No Yes Lactobacillus rhamnosus ATCC 8530   1 1
No Yes Lactobacillus rhamnosus GG   1 1
No Yes Lactobacillus rhamnosus GG   1 1
No Yes Lactobacillus johnsonii DPC 6026   1 1
No Yes Lactobacillus johnsonii NCC 533   1 1
No Yes Lactobacillus salivarius UCC118   1 1
No Yes Lactobacillus amylovorus GRL 1112   1 1
No Yes Lactobacillus reuteri JCM 1112   1 1
No Yes Lactobacillus reuteri SD2112   1 1
No Yes Lactobacillus plantarum subsp. plantarum ST-III   2 2
No Yes Lactobacillus plantarum WCFS1   2 2
No Yes Lactobacillus helveticus H10   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ND02   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus 2038   1 1
No Yes Lactobacillus acidophilus NCFM   1 1
No Yes Lactococcus garvieae Lg2   1 1
No Yes Lactococcus lactis subsp. lactis CV56   1 1
No Yes Lactococcus lactis subsp. lactis KF147   1 1
No Yes Lactococcus lactis subsp. lactis Il1403   1 1
No Yes Lactococcus lactis subsp. cremoris A76   1 1
No Yes Lactococcus lactis subsp. cremoris NZ9000   1 1
No Yes Lactococcus lactis subsp. cremoris SK11   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC 43143   1 1
No Yes Streptococcus equi subsp. zooepidemicus MGCS10565   1 1
No Yes Streptococcus equi subsp. zooepidemicus   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis ATCC 12394   1 1
No Yes Streptococcus parasanguinis FW213   1 1
No Yes Streptococcus pyogenes MGAS1882   1 1
No Yes Streptococcus pyogenes MGAS15252   1 1
No Yes Streptococcus pyogenes Alab49   1 1
No Yes Streptococcus pyogenes MGAS10750   1 1
No Yes Streptococcus pyogenes MGAS10270   1 1
No Yes Streptococcus pyogenes MGAS2096   1 1
No Yes Streptococcus pyogenes MGAS9429   1 1
No Yes Streptococcus pyogenes MGAS6180   1 1
No Yes Streptococcus pyogenes NZ131   1 1
No Yes Streptococcus pyogenes MGAS8232   1 1
No Yes Streptococcus pyogenes MGAS10394   1 1
No Yes Streptococcus pyogenes MGAS315   1 1
No Yes Streptococcus pyogenes SSI-1   1 1
No Yes Streptococcus pyogenes MGAS5005   1 1
No Yes Streptococcus pyogenes M1 GAS   1 1
No Yes Streptococcus pneumoniae ST556   1 1
No Yes Streptococcus pneumoniae INV104   1 1
No Yes Streptococcus pneumoniae INV200   1 1
No Yes Streptococcus pneumoniae OXC141   1 1
No Yes Streptococcus pneumoniae AP200   1 1
No Yes Streptococcus pneumoniae ATCC 700669   1 1
No Yes Streptococcus pneumoniae TCH8431/19A   1 1
No Yes Streptococcus pneumoniae CGSP14   1 1
No Yes Streptococcus pneumoniae G54   1 1
No Yes Streptococcus pneumoniae JJA   1 1
No Yes Streptococcus pneumoniae 70585   1 1
No Yes Streptococcus pneumoniae Hungary19A-6   1 1
No Yes Streptococcus pneumoniae Taiwan19F-14   1 1
No Yes Streptococcus pneumoniae D39   1 1
No Yes Streptococcus pneumoniae 670-6B   1 1
No Yes Streptococcus pneumoniae R6   1 1
No Yes Streptococcus pneumoniae TIGR4   1 1
No Yes Streptococcus agalactiae NEM316   1 1
No Yes Streptococcus agalactiae 2603V/R   1 1
No Yes Streptococcus mutans GS-5   1 1
No Yes Streptococcus mutans LJ23   1 1
No Yes Streptococcus mutans UA159   1 1
No Yes Streptococcus thermophilus MN-ZLW-002   1 1
No Yes Streptococcus thermophilus JIM 8232   1 1
No Yes Streptococcus thermophilus ND03   1 1
No Yes Streptococcus thermophilus CNRZ1066   1 1
No Yes Streptococcus thermophilus LMG 18311   1 1
No Yes Streptococcus suis ST3   1 1
No Yes Streptococcus suis D9   1 1
No Yes Streptococcus suis SS12   1 1
No Yes Streptococcus suis D12   1 1
No Yes Streptococcus suis ST1   1 1
No Yes Streptococcus suis A7   1 1
No Yes Streptococcus suis JS14   1 1
No Yes Streptococcus suis BM407   1 1
No Yes Streptococcus suis SC84   1 1
No Yes Streptococcus suis GZ1   1 1
No Yes Streptococcus suis 98HAH33   1 1
No Yes Streptococcus suis 05ZYH33   1 1
No Yes Streptococcus salivarius CCHSS3   1 1
No Yes Streptococcus salivarius JIM8777   1 1
No Yes Listeria monocytogenes 07PF0776   1 1
No Yes Listeria monocytogenes M7   2 2
No Yes Listeria monocytogenes 08-5578   2 2
No Yes Listeria monocytogenes 08-5923   2 2
No Yes Listeria monocytogenes L99   1 1
No Yes Listeria monocytogenes HCC23   2 2
No Yes Listeria monocytogenes 10403S   1 1
No Yes Listeria monocytogenes J0161   1 1
No Yes Listeria monocytogenes Finland 1998   1 1
No Yes Listeria monocytogenes FSL R2-561   2 2
No Yes Listeria monocytogenes serotype 4b str. F2365   1 1
No Yes Listeria monocytogenes EGD-e   1 1
No Yes Geobacillus sp. C56-T3   1 1
No Yes Geobacillus sp. Y4.1MC1   1 1
No Yes Geobacillus sp. Y412MC52   1 1
No Yes Geobacillus sp. Y412MC61   1 1
No Yes Bacillus subtilis BSn5   1 1
No Yes Bacillus subtilis subsp. subtilis str. RO-NN-1   1 1
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   1 1
No Yes Bacillus subtilis subsp. spizizenii str. W23   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus amyloliquefaciens Y2   1 1
No Yes Bacillus amyloliquefaciens DSM 7   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum CAU B946   1 1
No Yes Bacillus amyloliquefaciens XH7   1 1
No Yes Bacillus amyloliquefaciens LL3   1 1
No Yes Bacillus amyloliquefaciens TA208   1 1
No Yes Bacillus cereus subsp. cytotoxis NVH 391-98   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Bacillus megaterium WSH-002   1 1
No Yes Bacillus megaterium QM B1551   1 1
No Yes Bacillus coagulans 36D1   1 1
No Yes Staphylococcus pseudintermedius ED99   1 1
No Yes Staphylococcus lugdunensis N920143   4 4
No Yes Staphylococcus epidermidis ATCC 12228   5 5
No Yes Staphylococcus aureus 04-02981   4 4
No Yes Staphylococcus aureus RF122   3 3
No Yes Staphylococcus aureus subsp. aureus 11819-97   4 4
No Yes Staphylococcus aureus subsp. aureus M013   4 4
No Yes Staphylococcus aureus subsp. aureus HO 5096 0412   4 4
No Yes Staphylococcus aureus subsp. aureus VC40   4 4
No Yes Staphylococcus aureus subsp. aureus T0131   3 3
No Yes Staphylococcus aureus subsp. aureus LGA251   4 4
No Yes Staphylococcus aureus subsp. aureus MSHR1132   4 4
No Yes Staphylococcus aureus subsp. aureus ECT-R 2   4 4
No Yes Staphylococcus aureus subsp. aureus JKD6159   4 4
No Yes Staphylococcus aureus subsp. aureus ED133   4 4
No Yes Staphylococcus aureus subsp. aureus ED98   4 4
No Yes Staphylococcus aureus subsp. aureus TW20   4 4
No Yes Staphylococcus aureus subsp. aureus TCH60   4 4
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   3 3
No Yes Staphylococcus aureus subsp. aureus 71193   4 4
No Yes Staphylococcus aureus subsp. aureus S0385   4 4
No Yes Staphylococcus aureus subsp. aureus str. Newman   3 3
No Yes Staphylococcus aureus subsp. aureus Mu3   4 4
No Yes Staphylococcus aureus subsp. aureus USA300_TCH1516   4 4
No Yes Staphylococcus aureus subsp. aureus USA300_FPR3757   4 4
No Yes Staphylococcus aureus subsp. aureus JH9   4 4
No Yes Staphylococcus aureus subsp. aureus MSSA476   4 4
No Yes Staphylococcus aureus subsp. aureus MRSA252   4 4
No Yes Staphylococcus aureus subsp. aureus MW2   4 4
No Yes Staphylococcus aureus subsp. aureus N315   4 4
No Yes Staphylococcus aureus subsp. aureus Mu50   4 4
No Yes Staphylococcus aureus subsp. aureus COL   3 3
No Yes Staphylococcus aureus subsp. aureus NCTC 8325   4 4
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes 2_050719S (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   2 2
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   1 1
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes STRING v9.0 (STRING)   188 188
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2013_05 (Uniprot)   2357 2357
No Yes NCBI plasmid sequences (Plasmids)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes TargetDB (Targets)   10 10

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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