SUPERFAMILY 1.75 HMM library and genome assignments server

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YeeU-like superfamily domain assignments
in
Linum usitatissimum v200


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Select to display   Genome       Domains   Proteins
No Yes ALL   1802 1802
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Shewanella pealeana ATCC 700345   1 1
No Yes Shewanella oneidensis MR-1   1 1
No Yes Shewanella sp. MR-4   1 1
No Yes Shewanella putrefaciens CN-32   1 1
No Yes Pectobacterium wasabiae WPP163   1 1
No Yes Pectobacterium atrosepticum SCRI1043   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   1 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Yersinia pseudotuberculosis IP 31758   1 1
No Yes Xenorhabdus bovienii SS-2004   2 2
No Yes Shigella dysenteriae Sd197   1 1
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Enterobacter sp. 638   1 1
No Yes Enterobacter aerogenes KCTC 2190   2 2
No Yes Citrobacter rodentium ICC168   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella sp. MR-7   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Cronobacter sakazakii SP291   2 2
No Yes Dickeya dadantii Ech586   2 2
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Edwardsiella tarda FL6-60   1 1
No Yes Yersinia pseudotuberculosis PB1/+   2 2
No Yes Yersinia pseudotuberculosis YPIII   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Shigella flexneri 2002017   2 2
No Yes Shigella flexneri 2a str. 2457T   1 1
No Yes Shigella flexneri 2a str. 301   1 1
No Yes Shigella dysenteriae 1617   2 2
No Yes Serratia plymuthica S13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   2 2
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   3 3
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   2 2
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   2 2
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   2 2
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   2 2
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   2 2
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Escherichia coli E. coli PMV-1   2 2
No Yes Escherichia coli JJ1886   4 4
No Yes Escherichia coli LY180   2 2
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   5 5
No Yes Escherichia coli O104:H4 str. 2009EL-2071   5 5
No Yes Escherichia coli O104:H4 str. 2011C-3493   5 5
No Yes Escherichia coli NA114   3 3
No Yes Escherichia coli P12b   3 3
No Yes Escherichia coli str. 'clone D i2'   3 3
No Yes Escherichia coli str. 'clone D i14'   3 3
No Yes Escherichia coli UM146   3 3
No Yes Escherichia coli 042   4 4
No Yes Escherichia coli Xuzhou21   3 3
No Yes Escherichia coli IHE3034   2 2
No Yes Escherichia coli UMNK88   3 3
No Yes Escherichia coli ABU 83972   6 6
No Yes Escherichia coli KO11FL   2 2
No Yes Escherichia coli KO11FL   2 2
No Yes Escherichia coli ED1a   5 5
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli UMN026   2 2
No Yes Escherichia coli 55989   4 4
No Yes Escherichia coli S88   4 4
No Yes Escherichia coli W   2 2
No Yes Escherichia coli W   2 2
No Yes Escherichia coli DH1   4 4
No Yes Escherichia coli DH1   4 4
No Yes Escherichia coli ATCC 8739   1 1
No Yes Escherichia coli SMS-3-5   5 5
No Yes Escherichia coli SE15   2 2
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli APEC O1   2 2
No Yes Escherichia coli O103:H2 str. 12009   5 5
No Yes Escherichia coli UTI89   3 3
No Yes Escherichia coli 536   5 5
No Yes Escherichia coli E24377A   3 3
No Yes Escherichia coli ETEC H10407   4 4
No Yes Escherichia coli O55:H7 str. RM12579   2 2
No Yes Escherichia coli O55:H7 str. CB9615   3 3
No Yes Escherichia coli O26:H11 str. 11368   4 4
No Yes Escherichia coli CFT073   7 7
No Yes Escherichia coli O111:H- str. 11128   3 3
No Yes Escherichia coli O127:H6 str. E2348/69   1 1
No Yes Escherichia coli O157:H7 str. TW14359   2 2
No Yes Escherichia coli O157:H7 str. EC4115   3 3
No Yes Escherichia coli O157:H7 str. Sakai   3 3
No Yes Escherichia coli O157:H7 str. EDL933   3 3
No Yes Escherichia coli BW2952   3 3
No Yes Escherichia coli str. K-12 substr. MG1655   3 3
No Yes Escherichia coli str. K-12 substr. W3110   4 4
No Yes Escherichia coli str. K-12 substr. DH10B   4 4
No Yes Escherichia coli B str. REL606   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Enterobacter cloacae SCF1   2 2
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   8 8
No Yes Combined (meta-genome)   9 9
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   8 8
No Yes Fungus garden combined (combined) (meta-genome)   8 8
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   14 14
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   12 12
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   113 113
No Yes Uniprot 2017_06 genome   1232 1232
No Yes Global Ocean Sampling Expedition (GOS)   9 9
No Yes NCBI plasmid sequences (Plasmids)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   6 6
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   18 18
No Yes TargetDB (Targets)   12 12
No Yes The Salmonella enterica Pan-genome (meta-genome)   10 10

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