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RbcX-like superfamily domain assignments
in
Linum usitatissimum v200

Assignment details

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Linum usitatissimum v200 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
Lus10002563|PACid:23165492   3.53e-40   64-183   RbcX-like  
Lus10004588|PACid:23149786   3.14e-18   20-150   RbcX-like  
Lus10009941|PACid:23150137   4.05e-40   91-210   RbcX-like  
Lus10011972|PACid:23161457   1.31e-32   76-193   RbcX-like  
Lus10027363|PACid:23145435   2.22e-39   69-188   RbcX-like  
Lus10030141|PACid:23172550   1.7e-40   92-211   RbcX-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   2740 2740
No Yes Selaginella moellendorffii   3 3
No Yes Eucalyptus grandis v201 Rose gum 6 6
No Yes Theobroma cacao B97-61/B2 v1 Cacao 2 2
No Yes Gossypium raimondii v221   7 7
No Yes Citrus clementina v165   3 3
No Yes Citrus sinensis v154 Sweet orange 6 6
No Yes Thellungiella halophila v173   3 3
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 4 4
No Yes Capsella rubella v183   2 2
No Yes Arabidopsis lyrata Lyrate rockcress 2 2
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 3 3
No Yes Phaseolus vulgaris v186 French bean 3 3
No Yes Glycine max v109 Soybean 6 6
No Yes Cucumis sativus v122 Cucumber 10 10
No Yes Fragaria vesca Wild strawberry 2 2
No Yes Malus domestica v196 Apple 2 2
No Yes Prunus persica v139 Peach 2 2
No Yes Linum usitatissimum v200 Flax 6 6
No Yes Manihot esculenta v147 Cassava 4 4
No Yes Populus trichocarpa v156 Black cottonwood 3 3
No Yes Vitis vinifera Wine grape 3 3
No Yes Mimulus guttatus v140 Spotted monkey flower 3 3
No Yes Solanum lycopersicum v.2.3 Tomato 3 3
No Yes Solanum tuberosum Potato 5 5
No Yes Actinidia chinensis Hongyang   2 2
No Yes Aquilegia coerulea v195   3 3
No Yes Triticum urartu 22   3 3
No Yes Triticum aestivum 22 Bread wheat 9 9
No Yes Aegilops tauschii 22   3 2
No Yes Brachypodium distachyon Stiff brome 5 5
No Yes Oryza barthii 22 African wild rice 3 3
No Yes Oryza meridionalis 22   1 1
No Yes Oryza glumaepatula 22   3 3
No Yes Oryza glaberrima African rice 3 3
No Yes Oryza punctata 22   2 2
No Yes Oryza nivara 22   3 3
No Yes Oryza brachyantha 22 Malo sina 3 3
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 4 4
No Yes Oryza sativa v193 Rice 4 4
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Zea mays subsp. mays Maize 5 5
No Yes Zea mays v181 Maize 6 6
No Yes Sorghum bicolor Sorghum 3 3
No Yes Setaria italica v164 Foxtail millet 3 3
No Yes Panicum virgatum v202 Switchgrass 7 7
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 3 3
No Yes Amborella trichopoda 22   2 2
No Yes Physcomitrella patens   3 3
No Yes Ostreococcus sp. RCC809   8 8
No Yes Ostreococcus lucimarinus CCE9901   8 8
No Yes Ostreococcus tauri   5 5
No Yes Bathycoccus prasinos   7 7
No Yes Micromonas sp. RCC299   5 5
No Yes Micromonas pusilla CCMP1545 v3.0   7 6
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 2
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella variabilis sp. NC64A   5 5
No Yes Chlorella vulgaris   3 3
No Yes Volvox carteri f. nagariensis   4 4
No Yes Volvox carteri v199   3 3
No Yes Chlamydomonas reinhardtii 4.0   3 3
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Cyanophora paradoxa   1 1
No Yes Guillardia theta CCMP2712 v1.0   2 1
No Yes Geitlerinema sp. PCC 7407   1 1
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Halothece sp. PCC 7418   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Microcystis aeruginosa NIES-843   1 1
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Calothrix sp. PCC 7507   1 1
No Yes 'Nostoc azollae' 0708   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Anabaena sp. 90   1 1
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 2 2
No Yes Hordeum vulgare 22 Domesticated barley 7 7
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 3 3
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Dactylococcopsis salina PCC 8305   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 2 2
No Yes Lotus japonicus (Early assembly)   2 2
No Yes Malus x domestica (Duplicate) Apple 2 2
No Yes Ricinus communis (Early assembly) Castor bean 2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   5 5
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 3 3
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 3 3
No Yes Phoenix dactylifera (Early draft) Date palm 2 2
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes 4_050719Q (meta-genome)   4 4
No Yes 5_050719P (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   61 61
No Yes Uniprot 2017_06 genome   1832 1828
No Yes Global Ocean Sampling Expedition (GOS)   10 10
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   87 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   156 156
No Yes TargetDB (Targets)   4 4

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