Homeodomain-like superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		180790	180790
No Yes	Homo sapiens 49_36k (all transcripts)	Human	624	499
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	450	370
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	237	202
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	341	286
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	446	366
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	603	505
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	204	173
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	248	212
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	153	125
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	437	367
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	655	526
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	162	135
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	208	179
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	317	270
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	178	150
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	227	193
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	174	150
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	268	237
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	393	323
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	103	87
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	269	221
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	346	291
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	177	153
No Yes	Equus caballus 49_2 (all transcripts)	Horse	329	269
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	207	178
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	262	221
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	154	119
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	184	149
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	249	206
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	200	163
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	276	209
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	157	135
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	225	197
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	430	352
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	316	261
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	279	230
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	259	220
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	224	182
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	362	304
No Yes	Xenopus laevis	African clawed frog	805	710
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	358	307
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	541	479
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	424	373
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	424	376
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	392	333
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	984	780
No Yes	Branchiostoma floridae 1.0	Florida lancelet	367	295
No Yes	Ciona savignyi 49_2f (all transcripts)		151	126
No Yes	Ciona intestinalis 49_2i (all transcripts)		159	140
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	295	261
No Yes	Helobdella robusta		303	287
No Yes	Capitella sp. I		226	211
No Yes	Bombyx mori	Domestic silkworm	154	138
No Yes	Nasonia vitripennis	Jewel wasp	121	104
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	347	304
No Yes	Drosophila grimshawi 1.3		160	135
No Yes	Drosophila willistoni 1.3		175	149
No Yes	Drosophila pseudoobscura 2.3		155	131
No Yes	Drosophila persimilis 1.3		148	128
No Yes	Drosophila yakuba 1.3		162	136
No Yes	Drosophila simulans 1.3		140	120
No Yes	Drosophila sechellia 1.3		157	134
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	334	264
No Yes	Drosophila erecta 1.3		158	134
No Yes	Drosophila ananassae 1.3		162	136
No Yes	Drosophila virilis 1.2		161	136
No Yes	Drosophila mojavensis 1.3		159	136
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	141	125
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	171	149
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	148	126
No Yes	Tribolium castaneum 3.0	Red flour beetle	182	157
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	151	127
No Yes	Acyrthosiphon pisum	Pea aphid	134	107
No Yes	Daphnia pulex	Common water flea	193	164
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	156	132
No Yes	Lottia gigantea		200	181
No Yes	Pristionchus pacificus		115	102
No Yes	Meloidogyne incognita	Southern root-knot nematode	131	113
No Yes	Meloidogyne hapla		106	90
No Yes	Brugia malayi	Agent of lymphatic filariasis	56	48
No Yes	Caenorhabditis japonica		372	348
No Yes	Caenorhabditis brenneri		131	115
No Yes	Caenorhabditis remanei		259	227
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	191	164
No Yes	Caenorhabditis briggsae 2		204	180
No Yes	Schistosoma mansoni		110	103
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	229	200
No Yes	Hydra magnipapillata		217	197
No Yes	Trichoplax adhaerens		76	60
No Yes	Proterospongia sp. ATCC 50818		22	16
No Yes	Monosiga brevicollis		25	21
No Yes	Capsaspora owczarzaki ATCC 30864		33	23
No Yes	Malassezia globosa CBS 7966		18	12
No Yes	Ustilago maydis		31	22
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		60	56
No Yes	Melampsora laricis-populina		34	28
No Yes	Sporobolomyces roseus IAM 13481		18	12
No Yes	Serpula lacrymans var. lacrymans S7.9		45	35
No Yes	Coprinopsis cinerea okayama7 130		42	30
No Yes	Pleurotus ostreatus	Oyster mushroom	48	31
No Yes	Laccaria bicolor S238N-H82		55	42
No Yes	Agaricus bisporus var. bisporus		37	24
No Yes	Schizophyllum commune		37	28
No Yes	Heterobasidion annosum		27	21
No Yes	Phanerochaete chrysosporium RP-78 2.1		40	27
No Yes	Postia placenta		55	42
No Yes	Tremella mesenterica		26	22
No Yes	Cryptococcus neoformans JEC21		14	11
No Yes	Magnaporthe grisea 70-15		30	23
No Yes	Podospora anserina		38	28
No Yes	Sporotrichum thermophile ATCC 42464		40	31
No Yes	Thielavia terrestris NRRL 8126		39	28
No Yes	Chaetomium globosum CBS 148.51		78	62
No Yes	Neurospora tetrasperma		37	29
No Yes	Neurospora discreta FGSC 8579		49	39
No Yes	Neurospora crassa OR74A		41	32
No Yes	Cryphonectria parasitica	Chestnut blight fungus	32	23
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		45	38
No Yes	Nectria haematococca mpVI		52	43
No Yes	Fusarium verticillioides 7600		32	26
No Yes	Fusarium graminearum		37	32
No Yes	Trichoderma atroviride		37	30
No Yes	Trichoderma reesei 1.2		32	24
No Yes	Trichoderma virens Gv29-8		41	32
No Yes	Verticillium dahliae VdLs.17		38	32
No Yes	Verticillium albo-atrum VaMs.102		23	19
No Yes	Botrytis cinerea B05.10		41	36
No Yes	Sclerotinia sclerotiorum		121	116
No Yes	Alternaria brassicicola		32	27
No Yes	Pyrenophora tritici-repentis		35	29
No Yes	Cochliobolus heterostrophus		26	22
No Yes	Stagonospora nodorum		30	27
No Yes	Mycosphaerella fijiensis CIRAD86		28	23
No Yes	Mycosphaerella graminicola IPO323		26	21
No Yes	Ajellomyces dermatitidis SLH14081		29	25
No Yes	Histoplasma capsulatum class NAmI strain WU24		46	42
No Yes	Microsporum gypseum		37	28
No Yes	Arthroderma benhamiae CBS 112371		31	25
No Yes	Microsporum canis CBS 113480		38	29
No Yes	Trichophyton equinum CBS 127.97		36	25
No Yes	Trichophyton verrucosum HKI 0517		30	24
No Yes	Trichophyton tonsurans CBS 112818		35	25
No Yes	Trichophyton rubrum CBS 118892		32	26
No Yes	Paracoccidioides brasiliensis Pb18		27	22
No Yes	Coccidioides posadasii RMSCC 3488		37	31
No Yes	Coccidioides immitis RS		32	26
No Yes	Uncinocarpus reesii 1704		27	23
No Yes	Aspergillus fumigatus Af293		68	60
No Yes	Neosartorya fischeri NRRL 181		31	26
No Yes	Penicillium chrysogenum Wisconsin 54-1255		41	35
No Yes	Penicillium marneffei ATCC 18224		84	73
No Yes	Aspergillus carbonarius ITEM 5010		36	30
No Yes	Aspergillus terreus NIH2624		40	33
No Yes	Aspergillus oryzae RIB40		39	34
No Yes	Aspergillus niger ATCC 1015		19	16
No Yes	Aspergillus flavus NRRL3357		34	29
No Yes	Aspergillus clavatus NRRL 1		27	23
No Yes	Aspergillus nidulans FGSC A4		66	56
No Yes	Tuber melanosporum Vittad	Perigord truffle	55	47
No Yes	Candida dubliniensis CD36		35	25
No Yes	Candida tropicalis MYA-3404		31	23
No Yes	Candida parapsilosis		29	22
No Yes	Candida albicans SC5314		40	28
No Yes	Yarrowia lipolytica CLIB122		35	27
No Yes	Candida lusitaniae ATCC 42720		32	21
No Yes	Vanderwaltozyma polyspora DSM 70294		33	24
No Yes	Candida glabrata CBS138		35	25
No Yes	Kluyveromyces thermotolerans CBS 6340		30	21
No Yes	Lachancea kluyveri		30	21
No Yes	Kluyveromyces waltii		29	20
No Yes	Lodderomyces elongisporus NRRL YB-4239		28	21
No Yes	Ashbya gossypii ATCC 10895		31	24
No Yes	Debaromyces hansenii		28	21
No Yes	Zygosaccharomyces rouxii		30	21
No Yes	Saccharomyces mikatae MIT		33	25
No Yes	Saccharomyces paradoxus MIT		37	27
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	37	27
No Yes	Saccharomyces bayanus MIT		31	23
No Yes	Candida guilliermondii ATCC 6260		78	62
No Yes	Pichia stipitis CBS 6054		32	24
No Yes	Pichia pastoris GS115		29	19
No Yes	Kluyveromyces lactis		31	23
No Yes	Schizosaccharomyces octosporus yFS286		32	22
No Yes	Schizosaccharomyces japonicus yFS275		22	18
No Yes	Schizosaccharomyces pombe	Fission yeast	29	20
No Yes	Allomyces macrogynus ATCC 38327		67	58
No Yes	Rhizopus oryzae RA 99-880		350	325
No Yes	Phycomyces blakesleeanus		147	128
No Yes	Mucor circinelloides		73	56
No Yes	Encephalitozoon intestinalis		23	20
No Yes	Encephalitozoon cuniculi		24	20
No Yes	Spizellomyces punctatus DAOM BR117		52	40
No Yes	Batrachochytrium dendrobatidis JEL423		32	26
No Yes	Dictyostelium discoideum		55	41
No Yes	Dictyostelium purpureum		82	61
No Yes	Entamoeba dispar		46	38
No Yes	Entamoeba invadens		58	50
No Yes	Entamoeba histolytica 1		56	44
No Yes	Arabidopsis lyrata	Lyrate rockcress	416	375
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	531	480
No Yes	Carica papaya	Papaya	306	287
No Yes	Medicago truncatula	Barrel medic	343	317
No Yes	Glycine max	Soybean	897	839
No Yes	Cucumis sativus	Cucumber	529	484
No Yes	Populus trichocarpa 1.1	Black cottonwood	606	572
No Yes	Vitis vinifera	Wine grape	372	342
No Yes	Brachypodium distachyon		392	364
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	521	474
No Yes	Zea mays subsp. mays	Maize	685	640
No Yes	Sorghum bicolor	Sorghum	375	348
No Yes	Selaginella moellendorffii		267	243
No Yes	Physcomitrella patens subsp. patens		261	231
No Yes	Coccomyxa sp. C-169		40	31
No Yes	Chlorella sp. NC64A		41	34
No Yes	Chlorella vulgaris		38	29
No Yes	Volvox carteri f. nagariensis		55	46
No Yes	Chlamydomonas reinhardtii 4.0		52	43
No Yes	Ostreococcus sp. RCC809		47	39
No Yes	Ostreococcus lucimarinus CCE9901		48	38
No Yes	Ostreococcus tauri		50	43
No Yes	Micromonas sp. RCC299		55	43
No Yes	Micromonas pusilla CCMP1545		44	38
No Yes	Cyanidioschyzon merolae		51	40
No Yes	Giardia lamblia		16	16
No Yes	Trypanosoma cruzi strain CL Brener		7	7
No Yes	Trypanosoma brucei		4	4
No Yes	Leishmania mexicana		5	4
No Yes	Leishmania major strain Friedlin		5	4
No Yes	Leishmania infantum JPCM5		5	4
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		4	4
No Yes	Aureococcus anophagefferens		61	45
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	142	122
No Yes	Phytophthora sojae 1.1		202	170
No Yes	Phytophthora infestans T30-4		163	143
No Yes	Phytophthora capsici		137	118
No Yes	Phaeodactylum tricornutum		46	36
No Yes	Fragilariopsis cylindrus		111	88
No Yes	Thalassiosira pseudonana		51	44
No Yes	Paramecium tetraurelia		536	364
No Yes	Tetrahymena thermophila SB210 1		56	39
No Yes	Babesia bovis T2Bo		12	9
No Yes	Theileria parva		14	10
No Yes	Theileria annulata		14	12
No Yes	Plasmodium falciparum 3D7		10	7
No Yes	Plasmodium vivax SaI-1		8	6
No Yes	Plasmodium knowlesi strain H		7	5
No Yes	Plasmodium yoelii ssp. yoelii 1		8	6
No Yes	Plasmodium chabaudi		10	8
No Yes	Plasmodium berghei ANKA		10	9
No Yes	Cryptosporidium hominis		14	14
No Yes	Cryptosporidium muris		16	12
No Yes	Cryptosporidium parvum Iowa II		16	13
No Yes	Neospora caninum Nc-Liverpool		16	11
No Yes	Neospora caninum		14	9
No Yes	Toxoplasma gondii ME49		17	11
No Yes	Naegleria gruberi		67	51
No Yes	Trichomonas vaginalis		661	497
No Yes	Guillardia theta		2	1
No Yes	Emiliania huxleyi CCMP1516		191	170
No Yes	Acholeplasma laidlawii PG-8A		4	4
No Yes	Ureaplasma parvum ser. 3 ATCC 700970		1	1
No Yes	Ureaplasma urealyticum ser. 10 ATCC 33699		1	1
No Yes	Mycoplasma penetrans HF-2		1	1
No Yes	Aminobacterium colombiense DSM 12261		3	3
No Yes	Thermanaerovibrio acidaminovorans DSM 6589		2	2
No Yes	Brachyspira hyodysenteriae WA1		8	8
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis L550		24	23
No Yes	Leptospira interrogans ser. Lai 56601		24	23
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Paris)		52	48
No Yes	Treponema pallidum ssp. pallidum Nichols		2	2
No Yes	Treponema denticola ATCC 35405		24	23
No Yes	Borrelia garinii PBi		1	1
No Yes	Borrelia afzelii PKo		1	1
No Yes	Borrelia burgdorferi B31		1	1
No Yes	Borrelia recurrentis A1		1	1
No Yes	Borrelia duttonii Ly		1	1
No Yes	Borrelia turicatae 91E135		1	1
No Yes	Borrelia hermsii DAH		1	1
No Yes	Rhodopirellula baltica SH 1		56	47
No Yes	Pirellula staleyi DSM 6068		27	25
No Yes	Bifidobacterium longum NCC2705		10	10
No Yes	Bifidobacterium animalis ssp. lactis AD011		6	6
No Yes	Bifidobacterium dentium Bd1		24	21
No Yes	Bifidobacterium adolescentis ATCC 15703		21	18
No Yes	Kineococcus radiotolerans SRS30216		77	69
No Yes	Catenulispora acidiphila DSM 44928		222	196
No Yes	Stackebrandtia nassauensis DSM 44728		182	160
No Yes	Acidothermus cellulolyticus 11B		7	7
No Yes	Nakamurella multipartita DSM 44233		75	72
No Yes	Geodermatophilus obscurus DSM 43160		45	42
No Yes	Frankia sp. CcI3		49	48
No Yes	Frankia alni ACN14a		129	120
No Yes	Thermobifida fusca YX		23	22
No Yes	Thermomonospora curvata DSM 43183		80	77
No Yes	Streptosporangium roseum DSM 43021		261	241
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		150	135
No Yes	Streptomyces avermitilis MA-4680		173	154
No Yes	Streptomyces scabiei 87.22		164	150
No Yes	Streptomyces coelicolor A3(2)		211	194
No Yes	Actinosynnema mirum DSM 43827		181	164
No Yes	Saccharomonospora viridis DSM 43017		63	61
No Yes	Saccharopolyspora erythraea NRRL 2338		170	155
No Yes	Kribbella flavida DSM 17836		178	150
No Yes	Nocardioides sp. JS614		56	53
No Yes	Propionibacterium acnes KPA171202		10	10
No Yes	Salinispora arenicola CNS-205		72	62
No Yes	Salinispora tropica CNB-440		75	65
No Yes	Gordonia bronchialis DSM 43247		132	120
No Yes	Rhodococcus jostii RHA1		214	198
No Yes	Rhodococcus opacus B4		186	171
No Yes	Rhodococcus erythropolis PR4		216	201
No Yes	Nocardia farcinica IFM 10152		206	191
No Yes	Mycobacterium abscessus		178	170
No Yes	Mycobacterium sp. MCS		176	165
No Yes	Mycobacterium avium ssp. paratuberculosis K-10		127	124
No Yes	Mycobacterium vanbaalenii PYR-1		196	184
No Yes	Mycobacterium tuberculosis H37Rv		62	61
No Yes	Mycobacterium bovis AF2122/97		62	61
No Yes	Mycobacterium ulcerans Agy99		99	94
No Yes	Mycobacterium gilvum PYR-GCK		166	155
No Yes	Mycobacterium marinum M		150	145
No Yes	Mycobacterium smegmatis MC2 155		212	198
No Yes	Mycobacterium leprae TN		10	10
No Yes	Corynebacterium aurimucosum		23	22
No Yes	Corynebacterium kroppenstedtii DSM 44385		14	14
No Yes	Corynebacterium efficiens YS-314		29	29
No Yes	Corynebacterium urealyticum DSM 7109		16	16
No Yes	Corynebacterium jeikeium K411		25	25
No Yes	Corynebacterium glutamicum ATCC 13032 Kitasato		26	24
No Yes	Corynebacterium diphtheriae NCTC 13129		21	21
No Yes	Sanguibacter keddieii DSM 10542		64	60
No Yes	Kytococcus sedentarius DSM 20547		32	31
No Yes	Beutenbergia cavernae DSM 12333		78	67
No Yes	Leifsonia xyli ssp. xyli CTCB07		20	20
No Yes	Clavibacter michiganensis ssp. michiganensis NCPPB 382		31	31
No Yes	Jonesia denitrificans DSM 20603		21	21
No Yes	Brachybacterium faecium DSM 4810		32	31
No Yes	Xylanimonas cellulosilytica DSM 15894		40	36
No Yes	Kocuria rhizophila DC2201		32	32
No Yes	Rothia mucilaginosa DY-18		9	9
No Yes	Arthrobacter sp. FB24		44	41
No Yes	Arthrobacter chlorophenolicus A6		48	44
No Yes	Arthrobacter aurescens TC1		38	33
No Yes	Renibacterium salmoninarum ATCC 33209		49	47
No Yes	Micrococcus luteus NCTC 2665		23	22
No Yes	Cryptobacterium curtum DSM 15641		12	11
No Yes	Eggerthella lenta DSM 2243		45	40
No Yes	Slackia heliotrinireducens DSM 20476		46	46
No Yes	Atopobium parvulum DSM 20469		10	8
No Yes	Conexibacter woesei DSM 14684		137	129
No Yes	Rubrobacter xylanophilus DSM 9941		19	18
No Yes	Acidimicrobium ferrooxidans DSM 10331		18	18
No Yes	Denitrovibrio acetiphilus DSM 12809		49	42
No Yes	Deferribacter desulfuricans SSM1		13	13
No Yes	Kosmotoga olearia TBF 19.5.1		21	21
No Yes	Petrotoga mobilis SJ95		7	6
No Yes	Fervidobacterium nodosum Rt17-B1		7	6
No Yes	Thermosipho melanesiensis BI429		4	4
No Yes	Thermosipho africanus TCF52B		17	17
No Yes	Thermotoga lettingae TMO		6	5
No Yes	Thermotoga sp. RQ2		5	4
No Yes	Thermotoga naphthophila RKU-10		3	3
No Yes	Thermotoga petrophila RKU-1		5	4
No Yes	Thermotoga neapolitana DSM 4359		5	4
No Yes	Thermotoga maritima MSB8		5	4
No Yes	Dehalococcoides sp. CBDB1		2	2
No Yes	Dehalococcoides ethenogenes 195		6	6
No Yes	Thermomicrobium roseum DSM 5159		2	2
No Yes	Sphaerobacter thermophilus DSM 20745		9	9
No Yes	Herpetosiphon aurantiacus ATCC 23779		57	47
No Yes	Roseiflexus sp. RS-1		29	29
No Yes	Roseiflexus castenholzii DSM 13941		19	17
No Yes	Chloroflexus sp. Y-400-fl		11	9
No Yes	Chloroflexus aggregans DSM 9485		9	7
No Yes	Chloroflexus aurantiacus J-10-fl		14	11
No Yes	Sulfurihydrogenibium sp. YO3AOP1		10	10
No Yes	Sulfurihydrogenibium azorense Az-Fu1		21	21
No Yes	Persephonella marina EX-H1		16	16
No Yes	Hydrogenobaculum sp. Y04AAS1		7	7
No Yes	Thermocrinis albus DSM 14484		8	8
No Yes	Aquifex aeolicus VF5		11	11
No Yes	Hydrogenobacter thermophilus TK-6		11	11
No Yes	Gemmatimonas aurantiaca T-27		47	42
No Yes	Fibrobacter succinogenes ssp. succinogenes S85		11	10
No Yes	Candidatus Koribacter versatilis Ellin345		41	40
No Yes	Candidatus Solibacter usitatus Ellin6076		91	84
No Yes	Acidobacterium capsulatum ATCC 51196		37	35
No Yes	Elusimicrobium minutum Pei191		4	3
No Yes	Pelodictyon phaeoclathratiforme BU-1		17	17
No Yes	Pelodictyon luteolum DSM 273		11	11
No Yes	Chlorobium chlorochromatii CaD3		4	4
No Yes	Chlorobium phaeobacteroides DSM 266		23	23
No Yes	Chlorobium phaeovibrioides DSM 265		11	11
No Yes	Chlorobium limicola DSM 245		14	14
No Yes	Chlorobaculum parvum NCIB 8327		3	3
No Yes	Chlorobium tepidum TLS		3	3
No Yes	Chloroherpeton thalassium ATCC 35110		25	20
No Yes	Prosthecochloris aestuarii DSM 271		14	14
No Yes	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2		2	2
No Yes	Prevotella ruminicola 23		32	30
No Yes	Parabacteroides distasonis ATCC 8503		66	58
No Yes	Porphyromonas gingivalis W83		21	21
No Yes	Bacteroides vulgatus ATCC 8482		67	63
No Yes	Bacteroides thetaiotaomicron VPI-5482		101	91
No Yes	Bacteroides fragilis NCTC 9343		65	60
No Yes	Candidatus Amoebophilus asiaticus 5a2		11	10
No Yes	Salinibacter ruber DSM 13855		38	37
No Yes	Rhodothermus marinus DSM 4252		19	18
No Yes	Chitinophaga pinensis DSM 2588		258	222
No Yes	Dyadobacter fermentans DSM 18053		117	101
No Yes	Cytophaga hutchinsonii ATCC 33406		31	25
No Yes	Spirosoma linguale DSM 74		131	122
No Yes	Pedobacter heparinus DSM 2366		80	64
No Yes	Zunongwangia profunda SM-A87		80	68
No Yes	Gramella forsetii KT0803		22	21
No Yes	Robiginitalea biformata HTCC2501		34	30
No Yes	Flavobacteriaceae bacterium 3519-10		13	13
No Yes	Capnocytophaga ochracea DSM 7271		16	14
No Yes	Flavobacterium psychrophilum JIP02/86		20	17
No Yes	Flavobacterium johnsoniae UW101		90	81
No Yes	Blattabacterium sp. Bge		1	1
No Yes	Dictyoglomus turgidum DSM 6724		5	4
No Yes	Dictyoglomus thermophilum H-6-12		6	5
No Yes	Candidatus Protochlamydia amoebophila UWE25		10	9
No Yes	Coraliomargarita akajimensis DSM 45221		73	52
No Yes	Opitutus terrae PB90-1		51	41
No Yes	Methylacidiphilum infernorum V4		9	8
No Yes	Akkermansia muciniphila ATCC BAA-835		5	5
No Yes	Thermodesulfovibrio yellowstonii DSM 11347		16	16
No Yes	Streptobacillus moniliformis DSM 12112		5	4
No Yes	Sebaldella termitidis ATCC 33386		41	35
No Yes	Leptotrichia buccalis DSM 1135		12	9
No Yes	Fusobacterium nucleatum ssp. nucleatum ATCC 25586		14	12
No Yes	Thermobaculum terrenum ATCC BAA-798		13	9
No Yes	Deinococcus deserti VCD115		11	11
No Yes	Deinococcus geothermalis DSM 11300		8	7
No Yes	Deinococcus radiodurans R1		17	17
No Yes	Meiothermus ruber DSM 1279		11	11
No Yes	Thermus thermophilus HB27 (First sequenced)		8	8
No Yes	Natranaerobius thermophilus JW/NM-WN-LF		46	45
No Yes	Symbiobacterium thermophilum IAM 14863		27	25
No Yes	Anaerococcus prevotii DSM 20548		10	8
No Yes	Finegoldia magna ATCC 29328		12	11
No Yes	Clostridiales genomosp. BVAB3 UPII9-5		19	14
No Yes	Anaerocellum thermophilum DSM 6725		31	24
No Yes	Candidatus Desulforudis audaxviator MP104C		6	6
No Yes	Pelotomaculum thermopropionicum SI		27	26
No Yes	Desulfitobacterium hafniense Y51		118	99
No Yes	Desulfotomaculum reducens MI-1		34	32
No Yes	Desulfotomaculum acetoxidans DSM 771		62	59
No Yes	Eubacterium rectale ATCC 33656		46	31
No Yes	Eubacterium eligens ATCC 27750		17	12
No Yes	Syntrophomonas wolfei ssp. wolfei Goettingen		19	18
No Yes	Heliobacterium modesticaldum Ice1		10	10
No Yes	Alkaliphilus oremlandii OhILAs		55	43
No Yes	Alkaliphilus metalliredigens QYMF		66	55
No Yes	Clostridium phytofermentans ISDg		122	88
No Yes	Clostridium novyi NT		12	11
No Yes	Clostridium kluyveri DSM 555		43	38
No Yes	Clostridium cellulolyticum H10		93	78
No Yes	Clostridium beijerinckii NCIMB 8052		129	101
No Yes	Clostridium thermocellum ATCC 27405		36	31
No Yes	Clostridium tetani E88		19	16
No Yes	Clostridium perfringens 13		20	15
No Yes	Clostridium difficile 630		66	51
No Yes	Clostridium botulinum A ATCC 3502		56	46
No Yes	Clostridium acetobutylicum ATCC 824		34	29
No Yes	Veillonella parvula DSM 2008		7	5
No Yes	Acidaminococcus fermentans DSM 20731		12	11
No Yes	Caldicellulosiruptor saccharolyticus DSM 8903		65	58
No Yes	Coprothermobacter proteolyticus DSM 5265		3	2
No Yes	Carboxydothermus hydrogenoformans Z-2901		16	15
No Yes	Moorella thermoacetica ATCC 39073		23	21
No Yes	Ammonifex degensii KC4		24	24
No Yes	Thermoanaerobacter pseudethanolicus ATCC 33223		18	18
No Yes	Thermoanaerobacter sp. X514		16	16
No Yes	Thermoanaerobacter tengcongensis MB4		10	10
No Yes	Thermoanaerobacter italicus Ab9		9	8
No Yes	Halothermothrix orenii H 168		20	17
No Yes	Enterococcus faecalis V583		29	22
No Yes	Oenococcus oeni PSU-1		24	20
No Yes	Leuconostoc citreum KM20		14	12
No Yes	Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293		19	15
No Yes	Lactobacillus casei ATCC 334		20	20
No Yes	Lactobacillus crispatus ST1		15	14
No Yes	Lactobacillus rhamnosus GG		27	25
No Yes	Lactobacillus johnsonii NCC 533		12	10
No Yes	Lactobacillus salivarius UCC118		14	12
No Yes	Lactobacillus fermentum IFO 3956		20	20
No Yes	Lactobacillus sakei ssp. sakei 23K		16	15
No Yes	Lactobacillus reuteri DSM 20016		7	7
No Yes	Lactobacillus gasseri ATCC 33323		13	11
No Yes	Lactobacillus plantarum WCFS1		35	34
No Yes	Lactobacillus helveticus DPC 4571		9	8
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842		7	7
No Yes	Lactobacillus brevis ATCC 367		25	23
No Yes	Lactobacillus acidophilus NCFM		12	12
No Yes	Pediococcus pentosaceus ATCC 25745		19	14
No Yes	Lactococcus lactis ssp. lactis Il1403		27	25
No Yes	Streptococcus gallolyticus UCN34		29	24
No Yes	Streptococcus equi ssp. zooepidemicus MGCS10565		12	10
No Yes	Streptococcus dysgalactiae ssp. equisimilis GGS_124		23	19
No Yes	Streptococcus mitis B6		11	10
No Yes	Streptococcus uberis 0140J		8	6
No Yes	Streptococcus pyogenes M1 GAS		10	8
No Yes	Streptococcus pneumoniae TIGR4 (Virulent)		15	14
No Yes	Streptococcus agalactiae NEM316		15	13
No Yes	Streptococcus mutans UA159		25	23
No Yes	Streptococcus thermophilus LMG 18311 (Older strain)		14	10
No Yes	Streptococcus suis 05ZYH33		12	10
No Yes	Streptococcus sanguinis SK36		26	23
No Yes	Streptococcus gordonii Challis subCH1		23	20
No Yes	Exiguobacterium sp. AT1b		21	17
No Yes	Exiguobacterium sibiricum 255-15		19	17
No Yes	Bacillus tusciae DSM 2912		28	28
No Yes	Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446		20	17
No Yes	Brevibacillus brevis NBRC 100599		104	88
No Yes	Paenibacillus sp. JDR-2		424	272
No Yes	Listeria welshimeri ser. 6b SLCC5334		22	17
No Yes	Listeria innocua Clip11262		30	23
No Yes	Listeria seeligeri ser. 1/2b SLCC3954		22	17
No Yes	Listeria monocytogenes EGD-e		30	23
No Yes	Lysinibacillus sphaericus C3-41		68	52
No Yes	Oceanobacillus iheyensis HTE831		34	31
No Yes	Anoxybacillus flavithermus WK1		33	31
No Yes	Geobacillus sp. WCH70		26	24
No Yes	Geobacillus thermodenitrificans NG80-2		41	37
No Yes	Geobacillus kaustophilus HTA426		38	34
No Yes	Bacillus subtilis ssp. subtilis 168		48	37
No Yes	Bacillus licheniformis ATCC 14580		47	40
No Yes	Bacillus amyloliquefaciens FZB42		29	26
No Yes	Bacillus halodurans C-125		79	59
No Yes	Bacillus weihenstephanensis KBAB4		55	47
No Yes	Bacillus thuringiensis ser. konkukian 97-27		53	45
No Yes	Bacillus cereus ATCC 14579		56	49
No Yes	Bacillus anthracis Ames Ancestor		52	45
No Yes	Bacillus pseudofirmus OF4		27	24
No Yes	Bacillus clausii KSM-K16		88	64
No Yes	Bacillus pumilus SAFR-032		45	38
No Yes	Bacillus megaterium QM B1551		54	47
No Yes	Macrococcus caseolyticus JCSC5402		5	4
No Yes	Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305		25	21
No Yes	Staphylococcus lugdunensis HKU09-01		21	21
No Yes	Staphylococcus haemolyticus JCSC1435		29	25
No Yes	Staphylococcus epidermidis RP62A		11	11
No Yes	Staphylococcus carnosus ssp. carnosus TM300		17	16
No Yes	Staphylococcus aureus ssp. aureus NCTC 8325		18	15
No Yes	Nautilia profundicola AmH		5	4
No Yes	Sulfurospirillum deleyianum DSM 6946		9	7
No Yes	Arcobacter butzleri RM4018		17	15
No Yes	Campylobacter hominis ATCC BAA-381		2	2
No Yes	Campylobacter lari RM2100		3	3
No Yes	Campylobacter curvus 525.92		5	4
No Yes	Campylobacter concisus 13826		1	1
No Yes	Campylobacter jejuni ssp. jejuni NCTC 11168		3	3
No Yes	Campylobacter fetus ssp. fetus 82-40		4	4
No Yes	Sulfurimonas denitrificans DSM 1251		4	4
No Yes	Wolinella succinogenes DSM 1740		27	24
No Yes	Helicobacter hepaticus ATCC 51449		3	3
No Yes	Helicobacter mustelae 12198		1	1
No Yes	Nitratiruptor sp. SB155-2		6	6
No Yes	Sulfurovum sp. NBC37-1		15	13
No Yes	Bdellovibrio bacteriovorus HD100		23	23
No Yes	Syntrophus aciditrophicus SB		25	25
No Yes	Syntrophobacter fumaroxidans MPOB		43	43
No Yes	Desulfotalea psychrophila LSv54		28	26
No Yes	Desulfatibacillum alkenivorans AK-01		131	119
No Yes	Desulfobacterium autotrophicum HRM2		74	74
No Yes	Desulfococcus oleovorans Hxd3		57	55
No Yes	Desulfohalobium retbaense DSM 5692		27	26
No Yes	Desulfomicrobium baculatum DSM 4028		45	44
No Yes	Lawsonia intracellularis PHE/MN1-00		7	7
No Yes	Desulfovibrio magneticus RS-1		56	50
No Yes	Desulfovibrio vulgaris Hildenborough		48	45
No Yes	Desulfovibrio salexigens DSM 2638		70	59
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans G20		63	60
No Yes	Pelobacter propionicus DSM 2379		36	33
No Yes	Pelobacter carbinolicus DSM 2380		35	32
No Yes	Geobacter uraniireducens Rf4		65	59
No Yes	Geobacter sp. FRC-32		52	48
No Yes	Geobacter lovleyi SZ		52	50
No Yes	Geobacter bemidjiensis Bem		53	49
No Yes	Geobacter sulfurreducens PCA		38	36
No Yes	Geobacter metallireducens GS-15		43	42
No Yes	Haliangium ochraceum DSM 14365		90	84
No Yes	Sorangium cellulosum So ce 56		163	147
No Yes	Anaeromyxobacter sp. Fw109-5		64	60
No Yes	Anaeromyxobacter dehalogenans 2CP-C		64	62
No Yes	Myxococcus xanthus DK 1622		111	106
No Yes	Magnetococcus sp. MC-1		24	23
No Yes	Sideroxydans lithotrophicus ES-1		13	13
No Yes	Aromatoleum aromaticum EbN1		36	36
No Yes	Dechloromonas aromatica RCB		39	38
No Yes	Thauera sp. MZ1T		34	34
No Yes	Laribacter hongkongensis HLHK9		32	27
No Yes	Chromobacterium violaceum ATCC 12472		65	54
No Yes	Neisseria meningitidis Z2491		13	11
No Yes	Neisseria gonorrhoeae FA 1090		10	8
No Yes	Methylotenera mobilis JLW8		24	22
No Yes	Methylovorus sp. SIP3-4		38	33
No Yes	Methylobacillus flagellatus KT		30	29
No Yes	Thiobacillus denitrificans ATCC 25259		18	18
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		53	50
No Yes	Methylibium petroleiphilum PM1		47	44
No Yes	Leptothrix cholodnii SP-6		53	47
No Yes	Ralstonia eutropha JMP134		108	98
No Yes	Cupriavidus taiwanensis		96	84
No Yes	Ralstonia metallidurans CH34		103	92
No Yes	Ralstonia pickettii 12J		81	67
No Yes	Ralstonia solanacearum GMI1000		56	48
No Yes	Polynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1		5	5
No Yes	Burkholderia phytofirmans PsJN		171	128
No Yes	Burkholderia phymatum STM815		130	102
No Yes	Burkholderia thailandensis E264		119	92
No Yes	Burkholderia pseudomallei K96243		107	82
No Yes	Burkholderia mallei ATCC 23344		90	70
No Yes	Burkholderia sp. 383		238	185
No Yes	Burkholderia ambifaria AMMD		179	143
No Yes	Burkholderia cenocepacia AU 1054		192	151
No Yes	Burkholderia multivorans ATCC 17616		141	110
No Yes	Burkholderia vietnamiensis G4		157	121
No Yes	Burkholderia xenovorans LB400		221	171
No Yes	Burkholderia glumae BGR1		107	90
No Yes	Verminephrobacter eiseniae EF01-2		69	62
No Yes	Delftia acidovorans SPH-1		108	93
No Yes	Polaromonas sp. JS666		54	49
No Yes	Polaromonas naphthalenivorans CJ2		52	51
No Yes	Variovorax paradoxus S110		123	99
No Yes	Rhodoferax ferrireducens T118		45	41
No Yes	Diaphorobacter sp. TPSY		31	31
No Yes	Acidovorax sp. JS42		47	46
No Yes	Acidovorax citrulli AAC00-1		71	70
No Yes	Comamonas sp. CNB-1		59	53
No Yes	Herminiimonas arsenicoxydans		20	19
No Yes	Janthinobacterium sp. Marseille		67	51
No Yes	Bordetella petrii DSM 12804		122	102
No Yes	Bordetella avium 197N		25	22
No Yes	Bordetella pertussis Tohama I		255	248
No Yes	Bordetella parapertussis 12822		60	51
No Yes	Bordetella bronchiseptica RB50		65	54
No Yes	Nitrosospira multiformis ATCC 25196		27	27
No Yes	Nitrosomonas eutropha C91		24	24
No Yes	Nitrosomonas europaea ATCC 19718		38	38
No Yes	Caulobacter sp. K31		123	109
No Yes	Caulobacter crescentus CB15		56	52
No Yes	Caulobacter segnis ATCC 21756		83	67
No Yes	Phenylobacterium zucineum HLK1		49	41
No Yes	Erythrobacter litoralis HTCC2594		21	21
No Yes	Sphingopyxis alaskensis RB2256		29	29
No Yes	Novosphingobium aromaticivorans DSM 12444		43	41
No Yes	Sphingobium japonicum UT26S		51	47
No Yes	Sphingomonas wittichii RW1		109	90
No Yes	Zymomonas mobilis ssp. mobilis ZM4		10	10
No Yes	Maricaulis maris MCS10		35	30
No Yes	Hirschia baltica ATCC 49814		23	22
No Yes	Hyphomonas neptunium ATCC 15444		56	51
No Yes	Dinoroseobacter shibae DFL 12		35	33
No Yes	Jannaschia sp. CCS1		56	48
No Yes	Ruegeria sp. TM1040		38	33
No Yes	Ruegeria pomeroyi DSS-3		59	48
No Yes	Roseobacter denitrificans OCh 114		34	29
No Yes	Rhodobacter sphaeroides 2.4.1		41	36
No Yes	Rhodobacter capsulatus SB1003		36	31
No Yes	Paracoccus denitrificans PD1222		61	46
No Yes	Magnetospirillum magneticum AMB-1		31	29
No Yes	Rhodospirillum centenum SW		34	34
No Yes	Rhodospirillum rubrum ATCC 11170		59	51
No Yes	Azospirillum sp. B510		33	29
No Yes	Granulibacter bethesdensis CGDNIH1		19	16
No Yes	Gluconacetobacter diazotrophicus PAl 5		64	58
No Yes	Gluconobacter oxydans 621H		14	14
No Yes	Acetobacter pasteurianus IFO 3283-01		21	21
No Yes	alpha proteobacterium IMCC1322		13	10
No Yes	Candidatus Pelagibacter ubique HTCC1062		1	1
No Yes	Neorickettsia sennetsu Miyayama		1	1
No Yes	Neorickettsia risticii Illinois		1	1
No Yes	Ehrlichia chaffeensis Arkansas		1	1
No Yes	Ehrlichia canis Jake		1	1
No Yes	Ehrlichia ruminantium Welgevonden		1	1
No Yes	Anaplasma phagocytophilum HZ		1	1
No Yes	Anaplasma marginale St. Maries		1	1
No Yes	Anaplasma centrale Israel		1	1
No Yes	Orientia tsutsugamushi Boryong		3	3
No Yes	Rickettsia bellii RML369-C		1	1
No Yes	Rickettsia canadensis McKiel		1	1
No Yes	Rickettsia typhi Wilmington		1	1
No Yes	Rickettsia prowazekii Madrid E		1	1
No Yes	Rickettsia peacockii Rustic		30	30
No Yes	Rickettsia felis URRWXCal2		2	2
No Yes	Rickettsia massiliae MTU5		3	3
No Yes	Rickettsia africae ESF-5		1	1
No Yes	Rickettsia akari Hartford		1	1
No Yes	Rickettsia rickettsii Sheila Smith		1	1
No Yes	Rickettsia conorii Malish 7		1	1
No Yes	Wolbachia endosymbiont of Culex_quinquefasciatus Pel		4	4
No Yes	Wolbachia endosymbiont of Drosophila melanogaster (Genus only)		1	1
No Yes	Xanthobacter autotrophicus Py2		63	58
No Yes	Azorhizobium caulinodans ORS 571		77	64
No Yes	Methylobacterium chloromethanicum CM4		55	46
No Yes	Methylobacterium extorquens PA1		48	42
No Yes	Methylobacterium sp. 4-46		86	77
No Yes	Methylobacterium populi BJ001		48	43
No Yes	Methylobacterium nodulans ORS 2060		95	86
No Yes	Methylobacterium radiotolerans JCM 2831		65	57
No Yes	Ochrobactrum anthropi ATCC 49188		67	58
No Yes	Brucella microti CCM 4915		26	23
No Yes	Brucella canis ATCC 23365		27	24
No Yes	Brucella suis 1330		27	24
No Yes	Brucella melitensis bv. 1 16M		28	25
No Yes	Brucella ovis ATCC 25840		26	23
No Yes	Brucella abortus bv. 1 9-941		25	23
No Yes	Sinorhizobium medicae WSM419		44	34
No Yes	Sinorhizobium meliloti 1021		55	44
No Yes	Rhizobium etli CFN 42		71	62
No Yes	Rhizobium sp. NGR234		55	43
No Yes	Rhizobium leguminosarum bv. viciae 3841		96	74
No Yes	Agrobacterium vitis S4		54	47
No Yes	Agrobacterium radiobacter K84		133	105
No Yes	Agrobacterium tumefaciens C58		80	65
No Yes	Candidatus Liberibacter asiaticus psy62		1	1
No Yes	Chelativorans sp. BNC1		40	31
No Yes	Parvibaculum lavamentivorans DS-1		64	58
No Yes	Mesorhizobium loti MAFF303099		126	100
No Yes	Methylocella silvestris BL2		50	45
No Yes	Beijerinckia indica ssp. indica ATCC 9039		67	58
No Yes	Oligotropha carboxidovorans OM5		19	18
No Yes	Rhodopseudomonas palustris CGA009		90	81
No Yes	Nitrobacter winogradskyi Nb-255		71	71
No Yes	Nitrobacter hamburgensis X14		39	39
No Yes	Bradyrhizobium sp. ORS278		95	83
No Yes	Bradyrhizobium japonicum USDA 110		165	142
No Yes	Bartonella tribocorum CIP 105476		10	6
No Yes	Bartonella henselae Houston-1		2	2
No Yes	Bartonella grahamii as4aup		2	2
No Yes	Bartonella quintana Toulouse		2	2
No Yes	Bartonella bacilliformis KC583		2	2
No Yes	Acidithiobacillus ferrooxidans ATCC 23270		21	20
No Yes	Mannheimia succiniciproducens MBEL55E		24	19
No Yes	Aggregatibacter aphrophilus NJ8700		12	10
No Yes	Aggregatibacter actinomycetemcomitans D11S-1		14	11
No Yes	Haemophilus somnus 129PT		7	6
No Yes	Pasteurella multocida ssp. multocida Pm70		7	7
No Yes	Haemophilus parasuis SH0165		8	8
No Yes	Haemophilus ducreyi 35000HP		8	8
No Yes	Haemophilus influenzae Rd KW20		12	10
No Yes	Actinobacillus succinogenes 130Z		15	13
No Yes	Actinobacillus pleuropneumoniae L20		9	9
No Yes	Tolumonas auensis DSM 9187		49	41
No Yes	Aeromonas salmonicida ssp. salmonicida A449		87	77
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		64	54
No Yes	Aliivibrio salmonicida LFI1238		66	60
No Yes	Vibrio fischeri ES114		53	45
No Yes	Vibrio parahaemolyticus RIMD 2210633		81	67
No Yes	Vibrio harveyi ATCC BAA-1116		130	122
No Yes	Vibrio sp. Ex25		78	64
No Yes	Vibrio splendidus LGP32		77	66
No Yes	Vibrio vulnificus YJ016 (Good annotation)		85	73
No Yes	Vibrio cholerae O1 biov. El Tor N16961		48	43
No Yes	Photobacterium profundum SS9		106	95
No Yes	Psychromonas ingrahamii 37		31	31
No Yes	Idiomarina loihiensis L2TR		26	26
No Yes	Shewanella piezotolerans WP3		64	57
No Yes	Shewanella loihica PV-4		54	45
No Yes	Shewanella halifaxensis HAW-EB4		57	52
No Yes	Shewanella sediminis HAW-EB3		71	68
No Yes	Shewanella denitrificans OS217		42	38
No Yes	Shewanella pealeana ATCC 700345		49	47
No Yes	Shewanella oneidensis MR-1		54	49
No Yes	Shewanella baltica OS155		52	46
No Yes	Shewanella woodyi ATCC 51908		76	66
No Yes	Shewanella sp. MR-7		49	45
No Yes	Shewanella amazonensis SB2B		43	38
No Yes	Shewanella violacea DSS12		53	47
No Yes	Shewanella frigidimarina NCIMB 400		49	47
No Yes	Shewanella putrefaciens CN-32		47	43
No Yes	Colwellia psychrerythraea 34H		78	70
No Yes	Pseudoalteromonas atlantica T6c		67	53
No Yes	Pseudoalteromonas haloplanktis TAC125		37	32
No Yes	Teredinibacter turnerae T7901		50	45
No Yes	Saccharophagus degradans 2-40		59	53
No Yes	Marinobacter aquaeolei VT8		75	69
No Yes	Alteromonas macleodii Deep ecotype		35	33
No Yes	Hahella chejuensis KCTC 2396		128	105
No Yes	Alcanivorax borkumensis SK2		43	42
No Yes	Marinomonas sp. MWYL1		108	83
No Yes	Chromohalobacter salexigens DSM 3043		54	38
No Yes	Methylococcus capsulatus Bath		23	22
No Yes	Dichelobacter nodosus VCS1703A		4	4
No Yes	Stenotrophomonas maltophilia R551-3		89	75
No Yes	Xylella fastidiosa 9a5c		10	9
No Yes	Xanthomonas axonopodis pv. citri 306		73	65
No Yes	Xanthomonas albilineans		17	16
No Yes	Xanthomonas oryzae pv. oryzae KACC10331		52	50
No Yes	Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)		61	53
No Yes	Halothiobacillus neapolitanus c2		21	20
No Yes	Alkalilimnicola ehrlichii MLHE-1		26	26
No Yes	Thioalkalivibrio sp. HL-EbGR7		31	29
No Yes	Halorhodospira halophila SL1		16	16
No Yes	Allochromatium vinosum DSM 180		14	14
No Yes	Nitrosococcus halophilus Nc4		32	31
No Yes	Nitrosococcus oceani ATCC 19707		29	29
No Yes	Coxiella burnetii RSA 493		2	2
No Yes	Legionella longbeachae NSW150		12	10
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		17	15
No Yes	Kangiella koreensis DSM 16069		18	17
No Yes	Candidatus Vesicomyosocius okutanii HA		1	1
No Yes	Candidatus Ruthia magnifica Cm		2	2
No Yes	Cronobacter turicensis z3032		62	45
No Yes	Cronobacter sakazakii ATCC BAA-894		53	40
No Yes	Dickeya zeae Ech1591		65	51
No Yes	Dickeya dadantii Ech703		70	56
No Yes	Candidatus Hamiltonella defensa 5AT		10	10
No Yes	Pectobacterium wasabiae WPP163		67	50
No Yes	Pectobacterium atrosepticum SCRI1043		69	53
No Yes	Pectobacterium carotovorum ssp. carotovorum PC1		65	51
No Yes	Sodalis glossinidius morsitans		26	22
No Yes	Pantoea ananatis LMG 20103		64	51
No Yes	Buchnera aphidicola APS		1	1
No Yes	Photorhabdus asymbiotica		46	39
No Yes	Photorhabdus luminescens ssp. laumondii TTO1		85	79
No Yes	Edwardsiella ictaluri 93-146		38	32
No Yes	Edwardsiella tarda EIB202		37	30
No Yes	Yersinia pseudotuberculosis IP 32953		41	33
No Yes	Yersinia pestis CO92		36	30
No Yes	Yersinia enterocolitica ssp. enterocolitica 8081		45	37
No Yes	Xenorhabdus bovienii SS-2004		76	70
No Yes	Shigella sonnei Ss046		77	69
No Yes	Shigella flexneri 2a 2457T		89	80
No Yes	Shigella dysenteriae Sd197		80	73
No Yes	Shigella boydii Sb227		72	64
No Yes	Serratia proteamaculans 568		91	71
No Yes	Salmonella enterica ssp. enterica ser. Typhimurium LT2		69	56
No Yes	Proteus mirabilis HI4320		45	39
No Yes	Klebsiella variicola At-22		115	90
No Yes	Klebsiella pneumoniae ssp. pneumoniae MGH 78578		108	84
No Yes	Escherichia fergusonii ATCC 35469		54	44
No Yes	Escherichia coli K-12 subMG1655		70	60
No Yes	Erwinia tasmaniensis Et1/99		34	29
No Yes	Erwinia pyrifoliae Ep1/96		45	40
No Yes	Erwinia amylovora ATCC 49946		35	29
No Yes	Enterobacter sp. 638		77	58
No Yes	Citrobacter rodentium ICC168		67	54
No Yes	Citrobacter koseri ATCC BAA-895		70	54
No Yes	Azotobacter vinelandii DJ		86	78
No Yes	Pseudomonas entomophila L48		102	83
No Yes	Pseudomonas syringae pv. tomato DC3000		90	76
No Yes	Pseudomonas stutzeri A1501		70	58
No Yes	Pseudomonas putida KT2440		106	87
No Yes	Pseudomonas fluorescens Pf-5		148	126
No Yes	Pseudomonas mendocina ymp		114	90
No Yes	Pseudomonas aeruginosa PAO1		151	125
No Yes	Cellvibrio japonicus Ueda107		34	33
No Yes	Psychrobacter sp. PRwf-1		28	27
No Yes	Psychrobacter arcticus 273-4		20	20
No Yes	Psychrobacter cryohalolentis K5		30	26
No Yes	Acinetobacter sp. ADP1		67	57
No Yes	Acinetobacter baumannii ATCC 17978		63	53
No Yes	Thiomicrospira crunogena XCL-2		13	12
No Yes	Francisella philomiragia ssp. philomiragia ATCC 25017		47	47
No Yes	Francisella tularensis ssp. tularensis SCHU S4		47	47
No Yes	Gloeobacter violaceus PCC 7421		50	41
No Yes	Acaryochloris marina MBIC11017		101	88
No Yes	Nostoc punctiforme PCC 73102		56	50
No Yes	Nostoc sp. PCC 7120		78	57
No Yes	Anabaena variabilis ATCC 29413		43	39
No Yes	Trichodesmium erythraeum IMS101		74	74
No Yes	Cyanothece sp. ATCC 51142		32	30
No Yes	Synechocystis sp. PCC 6803		40	37
No Yes	Synechococcus elongatus PCC 6301		3	3
No Yes	Microcystis aeruginosa NIES-843		135	134
No Yes	Candidatus Korarchaeum cryptofilum OPF8		1	1
No Yes	Methanocella paludicola SANAE		11	11
No Yes	Methanosaeta thermophila PT		1	1
No Yes	Methanococcoides burtonii DSM 6242		2	2
No Yes	Methanosarcina acetivorans C2A		40	40
No Yes	Methanosarcina mazei Go1		14	14
No Yes	Methanosarcina barkeri Fusaro		10	10
No Yes	Methanohalophilus mahii DSM 5219		2	2
No Yes	Methanosphaerula palustris E1-9c		9	9
No Yes	Candidatus Methanoregula boonei 6A8		6	6
No Yes	Methanospirillum hungatei JF-1		2	2
No Yes	Methanocorpusculum labreanum Z		4	4
No Yes	Methanoculleus marisnigri JR1		2	2
No Yes	Ferroglobus placidus DSM 10642		10	10
No Yes	Archaeoglobus fulgidus DSM 4304		9	9
No Yes	Thermococcus onnurineus NA1		2	2
No Yes	Thermococcus kodakarensis KOD1		1	1
No Yes	Thermococcus gammatolerans EJ3		2	2
No Yes	Pyrococcus horikoshii OT3		2	2
No Yes	Pyrococcus abyssi GE5		2	2
No Yes	Pyrococcus furiosus DSM 3638		1	1
No Yes	Thermoplasma volcanium GSS1		1	1
No Yes	Picrophilus torridus DSM 9790		3	3
No Yes	Haloquadratum walsbyi DSM 16790		6	6
No Yes	Halomicrobium mukohataei DSM 12286		5	5
No Yes	Halorhabdus utahensis DSM 12940		8	8
No Yes	Haloterrigena turkmenica DSM 5511		4	4
No Yes	Natronomonas pharaonis DSM 2160		2	2
No Yes	Natrialba magadii ATCC 43099		5	5
No Yes	Halorubrum lacusprofundi ATCC 49239		4	4
No Yes	Haloferax volcanii DS2		2	2
No Yes	Halobacterium salinarum R1		3	3
No Yes	Halobacterium sp. NRC-1		3	3
No Yes	Haloarcula marismortui ATCC 43049		5	5
No Yes	Methanocaldococcus fervens AG86		1	1
No Yes	Methanocaldococcus jannaschii DSM 2661		2	2
No Yes	Methanococcus maripaludis S2		5	5
No Yes	Methanococcus vannielii SB		4	4
No Yes	Methanothermobacter thermautotrophicus Delta H		3	3
No Yes	Methanosphaera stadtmanae DSM 3091		4	4
No Yes	Methanobrevibacter ruminantium M1		5	5
No Yes	Methanobrevibacter smithii ATCC 35061		6	6
No Yes	uncultured methanogenic archaeon RC-I		11	11
No Yes	Hyperthermus butylicus DSM 5456		1	1
No Yes	Aeropyrum pernix K1		1	1
No Yes	Ignicoccus hospitalis KIN4/I		2	2
No Yes	Staphylothermus marinus F1		1	1
No Yes	Metallosphaera sedula DSM 5348		1	1
No Yes	Sulfolobus tokodaii 7		9	9
No Yes	Sulfolobus islandicus Y.N.15.51		18	18
No Yes	Sulfolobus solfataricus P2		26	26
No Yes	Sulfolobus acidocaldarius DSM 639		2	2
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	339	269
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	185	158
No Yes	Cryptococcus neoformans var. grubii H99		16	12
No Yes	Cryptococcus neoformans B-3501A		16	13
No Yes	Ajellomyces dermatitidis ER-3		30	25
No Yes	Histoplasma capsulatum H143		27	24
No Yes	Histoplasma capsulatum H88		30	25
No Yes	Histoplasma capsulatum G186AR		30	25
No Yes	Paracoccidioides brasiliensis Pb01		29	24
No Yes	Paracoccidioides brasiliensis Pb03		27	23
No Yes	Coccidioides posadasii str. Silveira		35	28
No Yes	Coccidioides immitis RMSCC 3703		24	20
No Yes	Coccidioides immitis RMSCC 2394		34	28
No Yes	Coccidioides immitis H538.4		30	26
No Yes	Aspergillus fumigatus A1163		32	28
No Yes	Candida albicans WO-1		36	25
No Yes	Saccharomyces cerevisiae YJM789		36	26
No Yes	Saccharomyces cerevisiae RM11-1a		34	25
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	37	27
No Yes	Schizosaccharomyces pombe 972h-		28	19
No Yes	Batrachochytrium dendrobatidis JAM81		48	35
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	440	410
No Yes	Plasmodium falciparum HB3		11	8
No Yes	Plasmodium falciparum Dd2		10	7
No Yes	Ureaplasma parvum ser. 3 ATCC 27815		1	1
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis JB197		19	18
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		23	22
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Ames)		49	46
No Yes	Treponema pallidum ssp. pallidum SS14		2	2
No Yes	Borrelia burgdorferi ZS7		1	1
No Yes	Bifidobacterium longum ssp. infantis ATCC 15697		25	23
No Yes	Bifidobacterium longum		16	16
No Yes	Bifidobacterium animalis ssp. lactis Bl-04		6	6
No Yes	Bifidobacterium animalis ssp. lactis DSM 10140		6	6
No Yes	Frankia sp. EAN1pec		237	221
No Yes	Propionibacterium acnes SK137		9	9
No Yes	Mycobacterium sp. KMS		175	164
No Yes	Mycobacterium sp. JLS		201	188
No Yes	Mycobacterium avium 104		145	140
No Yes	Mycobacterium tuberculosis KZN 1435		62	61
No Yes	Mycobacterium tuberculosis H37Ra		61	60
No Yes	Mycobacterium tuberculosis F11		62	61
No Yes	Mycobacterium tuberculosis CDC1551		61	60
No Yes	Mycobacterium bovis BCG Tokyo 172		60	59
No Yes	Mycobacterium bovis BCG Pasteur 1173P2		62	61
No Yes	Mycobacterium leprae Br4923		10	10
No Yes	Corynebacterium glutamicum R		32	29
No Yes	Corynebacterium glutamicum ATCC 13032 Bielefeld		26	24
No Yes	Clavibacter michiganensis ssp. sepedonicus		113	112
No Yes	Dehalococcoides sp. GT		3	3
No Yes	Dehalococcoides sp. VS		3	3
No Yes	Dehalococcoides sp. BAV1		3	3
No Yes	Chlorobium phaeobacteroides BS1		5	5
No Yes	Porphyromonas gingivalis ATCC 33277		9	9
No Yes	Bacteroides fragilis YCH46		66	60
No Yes	Salinibacter ruber		37	36
No Yes	Blattabacterium sp. BPLAN		1	1
No Yes	Thermus thermophilus HB8		5	5
No Yes	Desulfitobacterium hafniense DCB-2		93	80
No Yes	Clostridium kluyveri NBRC 12016		42	37
No Yes	Clostridium perfringens SM101		24	18
No Yes	Clostridium perfringens ATCC 13124		19	15
No Yes	Clostridium difficile R20291		59	47
No Yes	Clostridium difficile CD196		59	47
No Yes	Clostridium botulinum F Langeland		59	49
No Yes	Clostridium botulinum E3 Alaska E43		24	18
No Yes	Clostridium botulinum B1 Okra		60	52
No Yes	Clostridium botulinum Ba4 657		68	57
No Yes	Clostridium botulinum B Eklund 17B		31	23
No Yes	Clostridium botulinum A2 Kyoto		65	52
No Yes	Clostridium botulinum A3 Loch Maree		70	59
No Yes	Clostridium botulinum A Hall		56	46
No Yes	Clostridium botulinum A ATCC 19397		59	49
No Yes	Lactobacillus casei BL23		25	22
No Yes	Lactobacillus rhamnosus Lc 705		17	17
No Yes	Lactobacillus johnsonii FI9785		14	14
No Yes	Lactobacillus reuteri JCM 1112		7	7
No Yes	Lactobacillus plantarum JDM1		33	32
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365		10	10
No Yes	Lactococcus lactis ssp. lactis KF147		26	25
No Yes	Lactococcus lactis ssp. cremoris MG1363		36	33
No Yes	Lactococcus lactis ssp. cremoris SK11		45	43
No Yes	Streptococcus equi ssp. equi 4047		9	8
No Yes	Streptococcus equi ssp. zooepidemicus		20	17
No Yes	Streptococcus pyogenes MGAS10750		13	11
No Yes	Streptococcus pyogenes MGAS10270		13	10
No Yes	Streptococcus pyogenes MGAS2096		15	12
No Yes	Streptococcus pyogenes MGAS9429		13	10
No Yes	Streptococcus pyogenes MGAS6180		15	11
No Yes	Streptococcus pyogenes NZ131		12	10
No Yes	Streptococcus pyogenes MGAS8232		16	12
No Yes	Streptococcus pyogenes MGAS10394		11	9
No Yes	Streptococcus pyogenes Manfredo		14	11
No Yes	Streptococcus pyogenes MGAS315		13	10
No Yes	Streptococcus pyogenes SSI-1		12	9
No Yes	Streptococcus pyogenes MGAS5005		10	8
No Yes	Streptococcus pneumoniae ATCC 700669		9	8
No Yes	Streptococcus pneumoniae CGSP14		13	12
No Yes	Streptococcus pneumoniae G54		12	11
No Yes	Streptococcus pneumoniae P1031		17	16
No Yes	Streptococcus pneumoniae JJA		16	15
No Yes	Streptococcus pneumoniae 70585		17	16
No Yes	Streptococcus pneumoniae Hungary19A-6		13	12
No Yes	Streptococcus pneumoniae Taiwan19F-14		14	13
No Yes	Streptococcus pneumoniae D39		12	11
No Yes	Streptococcus pneumoniae R6 (Non-virulent)		16	15
No Yes	Streptococcus agalactiae A909		16	13
No Yes	Streptococcus agalactiae 2603V/R		15	13
No Yes	Streptococcus mutans NN2025		24	22
No Yes	Streptococcus thermophilus LMD-9		4	4
No Yes	Streptococcus thermophilus CNRZ1066 (Younger strain)		9	7
No Yes	Streptococcus suis BM407		14	12
No Yes	Streptococcus suis SC84		14	12
No Yes	Streptococcus suis 98HAH33		14	12
No Yes	Streptococcus suis P1/7		14	12
No Yes	Listeria monocytogenes 08-5578		28	22
No Yes	Listeria monocytogenes 08-5923		28	22
No Yes	Listeria monocytogenes Clip80459		29	23
No Yes	Listeria monocytogenes HCC23		28	22
No Yes	Listeria monocytogenes 4b F2365		30	24
No Yes	Geobacillus sp. Y412MC61		28	25
No Yes	Geobacillus sp. Y412MC10		339	231
No Yes	Bacillus licheniformis ATCC 14580		49	41
No Yes	Bacillus cytotoxicus NVH 391-98		27	26
No Yes	Bacillus thuringiensis Al Hakam		55	48
No Yes	Bacillus cereus 03BB102		55	49
No Yes	Bacillus cereus AH820		50	43
No Yes	Bacillus cereus AH187		57	50
No Yes	Bacillus cereus B4264		53	47
No Yes	Bacillus cereus G9842		57	49
No Yes	Bacillus cereus Q1		55	48
No Yes	Bacillus cereus E33L		58	49
No Yes	Bacillus cereus ATCC 10987		57	51
No Yes	Bacillus anthracis A0248		52	45
No Yes	Bacillus anthracis CDC 684		51	45
No Yes	Bacillus anthracis Sterne		55	47
No Yes	Bacillus anthracis Ames		52	45
No Yes	Bacillus megaterium DSM319		47	41
No Yes	Staphylococcus epidermidis ATCC 12228		9	9
No Yes	Staphylococcus aureus RF122		16	13
No Yes	Staphylococcus aureus ssp. aureus ED98		20	17
No Yes	Staphylococcus aureus ssp. aureus Newman		18	15
No Yes	Staphylococcus aureus ssp. aureus Mu3		17	14
No Yes	Staphylococcus aureus ssp. aureus USA300_TCH1516		16	13
No Yes	Staphylococcus aureus ssp. aureus USA300_FPR3757		16	13
No Yes	Staphylococcus aureus ssp. aureus JH1		16	13
No Yes	Staphylococcus aureus ssp. aureus JH9		17	14
No Yes	Staphylococcus aureus ssp. aureus MSSA476		16	13
No Yes	Staphylococcus aureus ssp. aureus MRSA252		26	23
No Yes	Staphylococcus aureus ssp. aureus MW2		17	14
No Yes	Staphylococcus aureus ssp. aureus N315		17	14
No Yes	Staphylococcus aureus ssp. aureus Mu50		17	14
No Yes	Staphylococcus aureus ssp. aureus COL		17	14
No Yes	Campylobacter jejuni RM1221		4	4
No Yes	Campylobacter jejuni ssp. jejuni 81116		3	3
No Yes	Campylobacter jejuni ssp. jejuni 81-176		3	3
No Yes	Campylobacter jejuni ssp. doylei 269.97		2	2
No Yes	Desulfovibrio vulgaris DP4		44	41
No Yes	Desulfovibrio vulgaris Miyazaki F		58	52
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans ATCC 27774		24	21
No Yes	Geobacter sp. M21		48	45
No Yes	Anaeromyxobacter sp. K		75	72
No Yes	Anaeromyxobacter dehalogenans 2CP-1		67	64
No Yes	Azoarcus sp. BH72		57	52
No Yes	Neisseria meningitidis alpha14		12	10
No Yes	Neisseria meningitidis 053442		12	10
No Yes	Neisseria meningitidis FAM18		11	9
No Yes	Neisseria meningitidis MC58		12	10
No Yes	Neisseria gonorrhoeae NCCP11945		10	8
No Yes	Ralstonia eutropha H16		114	99
No Yes	Ralstonia pickettii 12D		75	61
No Yes	Polynucleobacter necessarius ssp. necessarius STIR1		3	3
No Yes	Burkholderia sp. CCGE1002		145	107
No Yes	Burkholderia pseudomallei MSHR346		45	36
No Yes	Burkholderia pseudomallei 1106a		111	85
No Yes	Burkholderia pseudomallei 668		107	82
No Yes	Burkholderia pseudomallei 1710b		109	83
No Yes	Burkholderia mallei NCTC 10229		89	69
No Yes	Burkholderia mallei NCTC 10247		90	70
No Yes	Burkholderia mallei SAVP1		77	61
No Yes	Burkholderia ambifaria MC40-6		174	137
No Yes	Burkholderia cenocepacia MC0-3		215	172
No Yes	Burkholderia cenocepacia HI2424		204	162
No Yes	Burkholderia cenocepacia J2315		209	166
No Yes	Burkholderia multivorans ATCC 17616		140	109
No Yes	Caulobacter crescentus NA1000		57	53
No Yes	Zymomonas mobilis ssp. mobilis NCIMB 11163		9	9
No Yes	Rhodobacter sphaeroides KD131		41	36
No Yes	Rhodobacter sphaeroides ATCC 17025		26	23
No Yes	Rhodobacter sphaeroides ATCC 17029		43	38
No Yes	Gluconacetobacter diazotrophicus PAl 5		60	56
No Yes	Ehrlichia ruminantium Gardel		1	1
No Yes	Ehrlichia ruminantium Welgevonden		1	1
No Yes	Anaplasma marginale Florida		1	1
No Yes	Orientia tsutsugamushi Ikeda		33	33
No Yes	Rickettsia bellii OSU 85-389		1	1
No Yes	Rickettsia rickettsii Iowa		1	1
No Yes	Methylobacterium extorquens DM4		45	37
No Yes	Methylobacterium extorquens AM1		43	36
No Yes	Brucella suis ATCC 23445		28	25
No Yes	Brucella melitensis ATCC 23457		24	21
No Yes	Brucella abortus S19		27	24
No Yes	Brucella melitensis biov. Abortus 2308		25	23
No Yes	Rhizobium etli CIAT 652		58	49
No Yes	Rhizobium leguminosarum bv. trifolii WSM2304		80	65
No Yes	Rhizobium leguminosarum bv. trifolii WSM1325		111	87
No Yes	Rhodopseudomonas palustris TIE-1		92	81
No Yes	Rhodopseudomonas palustris HaA2		61	51
No Yes	Rhodopseudomonas palustris BisB5		44	42
No Yes	Rhodopseudomonas palustris BisB18		66	62
No Yes	Rhodopseudomonas palustris BisA53		46	44
No Yes	Bradyrhizobium sp. BTAi1		110	101
No Yes	Acidithiobacillus ferrooxidans ATCC 53993		18	17
No Yes	Haemophilus somnus 2336		11	10
No Yes	Haemophilus influenzae PittGG		8	7
No Yes	Haemophilus influenzae PittEE		11	10
No Yes	Haemophilus influenzae 86-028NP		10	9
No Yes	Actinobacillus pleuropneumoniae ser. 3 JL03		11	10
No Yes	Actinobacillus pleuropneumoniae ser. 7 AP76		27	24
No Yes	Vibrio fischeri MJ11		52	45
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		79	66
No Yes	Vibrio cholerae M66-2		47	42
No Yes	Vibrio cholerae O395		57	50
No Yes	Vibrio cholerae MJ-1236		51	46
No Yes	Shewanella sp. W3-18-1		48	44
No Yes	Shewanella sp. ANA-3		60	53
No Yes	Shewanella baltica OS223		46	41
No Yes	Shewanella baltica OS185		51	46
No Yes	Shewanella baltica OS195		59	54
No Yes	Shewanella sp. MR-4		49	45
No Yes	Stenotrophomonas maltophilia K279a		71	60
No Yes	Xylella fastidiosa M23		7	6
No Yes	Xylella fastidiosa M12		9	8
No Yes	Xylella fastidiosa Temecula1		7	6
No Yes	Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)		73	64
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		60	58
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		51	49
No Yes	Xanthomonas campestris pv. campestris B100		60	53
No Yes	Xanthomonas campestris pv. campestris 8004 (Completed 2005)		58	50
No Yes	Thioalkalivibrio sp. K90mix		21	20
No Yes	Coxiella burnetii CbuK_Q154		2	2
No Yes	Coxiella burnetii CbuG_Q212		2	2
No Yes	Coxiella burnetii Dugway 5J108-111		4	3
No Yes	Coxiella burnetii RSA 331		2	2
No Yes	Legionella pneumophila Corby		14	13
No Yes	Legionella pneumophila Paris		12	11
No Yes	Legionella pneumophila Lens		18	17
No Yes	Dickeya dadantii Ech586		67	55
No Yes	Buchnera aphidicola Cc		1	1
No Yes	Buchnera aphidicola Tuc7		1	1
No Yes	Buchnera aphidicola 5A		1	1
No Yes	Buchnera aphidicola Sg		1	1
No Yes	Yersinia pseudotuberculosis PB1/+		40	33
No Yes	Yersinia pseudotuberculosis YPIII		41	34
No Yes	Yersinia pseudotuberculosis IP 31758		41	34
No Yes	Yersinia pestis Z176003		35	29
No Yes	Yersinia pestis Pestoides F		37	30
No Yes	Yersinia pestis Nepal516		37	32
No Yes	Yersinia pestis Antiqua		38	32
No Yes	Yersinia pestis Angola		27	24
No Yes	Yersinia pestis biov. Microtus 91001		37	31
No Yes	Yersinia pestis KIM		35	29
No Yes	Shigella flexneri 5 8401		90	81
No Yes	Shigella flexneri 2a 301		91	82
No Yes	Shigella boydii CDC 3083-94		49	40
No Yes	Salmonella enterica ssp. arizonae ser. 62:z4,z23:--		72	57
No Yes	Salmonella enterica ssp. enterica ser. Schwarzengrund CVM19633		62	50
No Yes	Salmonella enterica ssp. enterica ser. Enteritidis P125109		68	55
No Yes	Salmonella enterica ssp. enterica ser. Choleraesuis str. SC-B67		65	52
No Yes	Salmonella enterica ssp. enterica ser. Newport SL254		62	50
No Yes	Salmonella enterica ssp. enterica ser. Dublin CT_02021853		64	52
No Yes	Salmonella enterica ssp. enterica ser. Typhi CT18		64	53
No Yes	Salmonella enterica ssp. enterica ser. Typhi Ty2		63	52
No Yes	Salmonella enterica ssp. enterica ser. Agona SL483		64	51
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi C RKS4594		65	53
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi B SPB7		68	55
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A AKU_12601		64	52
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A ATCC 9150		64	52
No Yes	Salmonella enterica ssp. enterica ser. Heidelberg SL476		63	53
No Yes	Salmonella enterica ssp. enterica ser. Gallinarum 287/91		59	49
No Yes	Klebsiella pneumoniae 342		116	91
No Yes	Klebsiella pneumoniae NTUH-K2044		105	84
No Yes	Escherichia coli ED1a		70	59
No Yes	Escherichia coli IAI39		72	60
No Yes	Escherichia coli UMN026		77	64
No Yes	Escherichia coli 55989		72	60
No Yes	Escherichia coli S88		69	57
No Yes	Escherichia coli IAI1		60	49
No Yes	Escherichia coli BL21		68	57
No Yes	Escherichia coli ATCC 8739		63	53
No Yes	Escherichia coli BL21(DE3)		72	61
No Yes	Escherichia coli SMS-3-5		74	63
No Yes	Escherichia coli SE11		68	56
No Yes	Escherichia coli APEC O1		68	57
No Yes	Escherichia coli O103:H2 12009		67	57
No Yes	Escherichia coli UTI89		66	55
No Yes	Escherichia coli 536		73	62
No Yes	Escherichia coli HS		58	50
No Yes	Escherichia coli E24377A		72	60
No Yes	Escherichia coli O55:H7 CB9615		72	59
No Yes	Escherichia coli O26:H11 11368		75	65
No Yes	Escherichia coli CFT073		80	68
No Yes	Escherichia coli O111:H- 11128		66	55
No Yes	Escherichia coli O127:H6 E2348/69		73	61
No Yes	Escherichia coli O157:H7 EDL933		80	67
No Yes	Escherichia coli O157:H7 TW14359		85	72
No Yes	Escherichia coli O157:H7 EC4115		69	57
No Yes	Escherichia coli O157:H7 Sakai		84	71
No Yes	Escherichia coli BW2952		69	59
No Yes	Escherichia coli K-12 subW3110		76	65
No Yes	Escherichia coli K-12 subDH10B		70	60
No Yes	Escherichia coli B REL606		71	60
No Yes	Erwinia amylovora CFBP1430		36	30
No Yes	Pseudomonas syringae pv. phaseolicola 1448A		84	71
No Yes	Pseudomonas syringae pv. syringae B728a		82	71
No Yes	Pseudomonas putida W619		112	88
No Yes	Pseudomonas putida F1		115	93
No Yes	Pseudomonas putida GB-1		114	93
No Yes	Pseudomonas fluorescens SBW25		151	122
No Yes	Pseudomonas fluorescens Pf0-1		131	105
No Yes	Pseudomonas aeruginosa LESB58		148	122
No Yes	Pseudomonas aeruginosa PA7		154	127
No Yes	Pseudomonas aeruginosa UCBPP-PA14		156	127
No Yes	Acinetobacter baumannii AB307-0294		80	74
No Yes	Acinetobacter baumannii AYE		82	76
No Yes	Acinetobacter baumannii SDF		42	40
No Yes	Acinetobacter baumannii AB0057		80	74
No Yes	Acinetobacter baumannii ACICU		86	79
No Yes	Francisella novicida U112		2	2
No Yes	Francisella tularensis ssp. mediasiatica FSC147		1	1
No Yes	Francisella tularensis ssp. holarctica FTNF002-00		58	58
No Yes	Francisella tularensis ssp. holarctica OSU18		39	39
No Yes	Francisella tularensis ssp. holarctica		59	59
No Yes	Francisella tularensis ssp. tularensis WY96-3418		53	53
No Yes	Francisella tularensis ssp. tularensis FSC198		47	47
No Yes	Cyanothece sp. PCC 8802		24	24
No Yes	Cyanothece sp. PCC 7425		49	46
No Yes	Cyanothece sp. PCC 7424		28	25
No Yes	Cyanothece sp. PCC 8801		21	21
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		4	4
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		17	17
No Yes	Synechococcus sp. CC9311		1	1
No Yes	Synechococcus sp. PCC 7002		8	7
No Yes	Synechococcus elongatus PCC 7942		3	3
No Yes	Methanococcus maripaludis C6		3	3
No Yes	Methanococcus maripaludis C7		4	4
No Yes	Methanococcus maripaludis C5		3	3
No Yes	Sulfolobus islandicus Y.G.57.14		19	19
No Yes	Sulfolobus islandicus L.S.2.15		5	5
No Yes	Sulfolobus islandicus M.16.27		4	4
No Yes	Sulfolobus islandicus M.14.25		8	8
No Yes	Sulfolobus islandicus M.16.4		6	6
No Yes	Sulfolobus islandicus L.D.8.5		9	9
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	329	273
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		10	7
No Yes	Lotus japonicus (Early assembly)		55	50
No Yes	Prunus persica (Early draft)	Peach	336	310
No Yes	Manihot esculenta (Early draft)	Cassava	561	527
No Yes	Ricinus communis (Early assembly)	Castor bean	358	324
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	401	377
No Yes	Phoenix dactylifera (Early draft)	Date palm	213	199
No Yes	Trypanosoma vivax (Parial)		5	4
No Yes	Trypanosoma congolense (Partial)		5	4
No Yes	Toxoplasma gondii GT1 (Early assembly)		16	10
No Yes	Toxoplasma gondii VEG (Early assembly)		16	10
No Yes	Toxoplasma gondii RH (Archived)		16	12
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	365	299
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	320	265
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	236	201
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	311	258
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	318	264
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	321	265
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	204	173
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	248	212
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	153	125
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	325	273
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	373	315
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	162	135
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	208	179
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	300	253
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	178	150
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	227	193
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	174	150
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	253	223
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	313	261
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	103	87
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	269	221
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	316	262
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	177	153
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	309	258
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	207	178
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	262	221
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	154	119
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	184	149
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	249	206
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	200	163
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	276	209
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	157	135
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	224	196
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	299	249
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	221	185
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	276	227
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	253	214
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	192	153
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	223	183
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	286	246
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	380	342
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	357	314
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	363	319
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	392	333
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	390	323
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		101	92
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		109	98
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	129	111
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	339	269
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	165	140
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	134	118
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	141	122
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	143	125
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	141	123
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	414	380
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	518	471
No Yes	NCBI viral sequences (Viral)		35	34
No Yes	PDB chains (SCOP 1.73) (PDB)		186	176
No Yes	TargetDB (Targets)		2466	2086
No Yes	UniProt 15.0 (UniProt)		77704	67460
No Yes	UniProt 15.0 viral sequences (Viral)		45	44