"Winged helix" DNA-binding domain superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		237633	237633
No Yes	Homo sapiens 49_36k (all transcripts)	Human	443	414
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	301	282
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	146	138
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	221	211
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	319	299
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	415	392
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	138	129
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	150	142
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	121	113
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	262	248
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	364	334
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	131	121
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	150	140
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	190	178
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	122	117
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	152	142
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	127	119
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	157	147
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	282	261
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	119	114
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	174	163
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	246	233
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	132	125
No Yes	Equus caballus 49_2 (all transcripts)	Horse	202	190
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	149	139
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	184	172
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	103	97
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	134	125
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	152	143
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	122	116
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	155	145
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	124	116
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	159	150
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	296	279
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	227	214
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	185	174
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	170	159
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	166	156
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	216	203
No Yes	Xenopus laevis	African clawed frog	557	535
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	316	305
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	314	291
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	286	273
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	250	239
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	243	230
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	673	648
No Yes	Branchiostoma floridae 1.0	Florida lancelet	268	254
No Yes	Ciona savignyi 49_2f (all transcripts)		155	148
No Yes	Ciona intestinalis 49_2i (all transcripts)		149	145
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	255	243
No Yes	Helobdella robusta		131	127
No Yes	Capitella sp. I		171	165
No Yes	Bombyx mori	Domestic silkworm	71	65
No Yes	Nasonia vitripennis	Jewel wasp	88	84
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	173	171
No Yes	Drosophila grimshawi 1.3		105	102
No Yes	Drosophila willistoni 1.3		89	86
No Yes	Drosophila pseudoobscura 2.3		96	92
No Yes	Drosophila persimilis 1.3		95	91
No Yes	Drosophila yakuba 1.3		91	87
No Yes	Drosophila simulans 1.3		73	71
No Yes	Drosophila sechellia 1.3		128	124
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	148	145
No Yes	Drosophila erecta 1.3		111	107
No Yes	Drosophila ananassae 1.3		104	101
No Yes	Drosophila virilis 1.2		91	88
No Yes	Drosophila mojavensis 1.3		82	79
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	103	99
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	113	110
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	85	82
No Yes	Tribolium castaneum 3.0	Red flour beetle	98	94
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	88	85
No Yes	Acyrthosiphon pisum	Pea aphid	88	85
No Yes	Daphnia pulex	Common water flea	112	109
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	83	80
No Yes	Lottia gigantea		129	124
No Yes	Pristionchus pacificus		83	80
No Yes	Meloidogyne incognita	Southern root-knot nematode	89	82
No Yes	Meloidogyne hapla		63	59
No Yes	Brugia malayi	Agent of lymphatic filariasis	49	48
No Yes	Caenorhabditis japonica		77	74
No Yes	Caenorhabditis brenneri		76	74
No Yes	Caenorhabditis remanei		122	117
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	150	142
No Yes	Caenorhabditis briggsae 2		99	94
No Yes	Schistosoma mansoni		98	96
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	164	160
No Yes	Hydra magnipapillata		107	102
No Yes	Trichoplax adhaerens		88	84
No Yes	Proterospongia sp. ATCC 50818		76	71
No Yes	Monosiga brevicollis		70	67
No Yes	Capsaspora owczarzaki ATCC 30864		72	59
No Yes	Malassezia globosa CBS 7966		33	32
No Yes	Ustilago maydis		42	40
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		48	45
No Yes	Melampsora laricis-populina		40	38
No Yes	Sporobolomyces roseus IAM 13481		40	38
No Yes	Serpula lacrymans var. lacrymans S7.9		46	43
No Yes	Coprinopsis cinerea okayama7 130		48	46
No Yes	Pleurotus ostreatus	Oyster mushroom	65	63
No Yes	Laccaria bicolor S238N-H82		58	54
No Yes	Agaricus bisporus var. bisporus		61	58
No Yes	Schizophyllum commune		57	54
No Yes	Heterobasidion annosum		54	50
No Yes	Phanerochaete chrysosporium RP-78 2.1		48	46
No Yes	Postia placenta		74	69
No Yes	Tremella mesenterica		45	42
No Yes	Cryptococcus neoformans JEC21		40	37
No Yes	Magnaporthe grisea 70-15		54	51
No Yes	Podospora anserina		55	52
No Yes	Sporotrichum thermophile ATCC 42464		48	45
No Yes	Thielavia terrestris NRRL 8126		48	45
No Yes	Chaetomium globosum CBS 148.51		46	44
No Yes	Neurospora tetrasperma		48	45
No Yes	Neurospora discreta FGSC 8579		45	42
No Yes	Neurospora crassa OR74A		47	44
No Yes	Cryphonectria parasitica	Chestnut blight fungus	51	48
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		66	59
No Yes	Nectria haematococca mpVI		57	53
No Yes	Fusarium verticillioides 7600		52	50
No Yes	Fusarium graminearum		52	48
No Yes	Trichoderma atroviride		42	41
No Yes	Trichoderma reesei 1.2		44	41
No Yes	Trichoderma virens Gv29-8		53	50
No Yes	Verticillium dahliae VdLs.17		43	41
No Yes	Verticillium albo-atrum VaMs.102		43	40
No Yes	Botrytis cinerea B05.10		56	54
No Yes	Sclerotinia sclerotiorum		46	43
No Yes	Alternaria brassicicola		45	43
No Yes	Pyrenophora tritici-repentis		51	48
No Yes	Cochliobolus heterostrophus		55	52
No Yes	Stagonospora nodorum		62	60
No Yes	Mycosphaerella fijiensis CIRAD86		43	41
No Yes	Mycosphaerella graminicola IPO323		44	41
No Yes	Ajellomyces dermatitidis SLH14081		44	41
No Yes	Histoplasma capsulatum class NAmI strain WU24		38	35
No Yes	Microsporum gypseum		50	47
No Yes	Arthroderma benhamiae CBS 112371		50	47
No Yes	Microsporum canis CBS 113480		52	49
No Yes	Trichophyton equinum CBS 127.97		47	45
No Yes	Trichophyton verrucosum HKI 0517		52	49
No Yes	Trichophyton tonsurans CBS 112818		46	44
No Yes	Trichophyton rubrum CBS 118892		47	45
No Yes	Paracoccidioides brasiliensis Pb18		43	40
No Yes	Coccidioides posadasii RMSCC 3488		49	46
No Yes	Coccidioides immitis RS		48	45
No Yes	Uncinocarpus reesii 1704		46	43
No Yes	Aspergillus fumigatus Af293		57	54
No Yes	Neosartorya fischeri NRRL 181		59	56
No Yes	Penicillium chrysogenum Wisconsin 54-1255		57	54
No Yes	Penicillium marneffei ATCC 18224		69	66
No Yes	Aspergillus carbonarius ITEM 5010		68	65
No Yes	Aspergillus terreus NIH2624		67	64
No Yes	Aspergillus oryzae RIB40		66	63
No Yes	Aspergillus niger ATCC 1015		50	47
No Yes	Aspergillus flavus NRRL3357		66	64
No Yes	Aspergillus clavatus NRRL 1		54	51
No Yes	Aspergillus nidulans FGSC A4		58	56
No Yes	Tuber melanosporum Vittad	Perigord truffle	49	45
No Yes	Candida dubliniensis CD36		37	35
No Yes	Candida tropicalis MYA-3404		39	37
No Yes	Candida parapsilosis		35	33
No Yes	Candida albicans SC5314		37	35
No Yes	Yarrowia lipolytica CLIB122		39	37
No Yes	Candida lusitaniae ATCC 42720		34	32
No Yes	Vanderwaltozyma polyspora DSM 70294		35	32
No Yes	Candida glabrata CBS138		39	36
No Yes	Kluyveromyces thermotolerans CBS 6340		37	35
No Yes	Lachancea kluyveri		37	35
No Yes	Kluyveromyces waltii		35	33
No Yes	Lodderomyces elongisporus NRRL YB-4239		34	32
No Yes	Ashbya gossypii ATCC 10895		33	31
No Yes	Debaromyces hansenii		41	39
No Yes	Zygosaccharomyces rouxii		35	32
No Yes	Saccharomyces mikatae MIT		37	34
No Yes	Saccharomyces paradoxus MIT		37	34
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	38	35
No Yes	Saccharomyces bayanus MIT		39	36
No Yes	Candida guilliermondii ATCC 6260		46	44
No Yes	Pichia stipitis CBS 6054		36	34
No Yes	Pichia pastoris GS115		38	35
No Yes	Kluyveromyces lactis		35	33
No Yes	Schizosaccharomyces octosporus yFS286		43	41
No Yes	Schizosaccharomyces japonicus yFS275		40	39
No Yes	Schizosaccharomyces pombe	Fission yeast	42	40
No Yes	Allomyces macrogynus ATCC 38327		78	76
No Yes	Rhizopus oryzae RA 99-880		83	82
No Yes	Phycomyces blakesleeanus		75	73
No Yes	Mucor circinelloides		76	74
No Yes	Encephalitozoon intestinalis		16	16
No Yes	Encephalitozoon cuniculi		19	19
No Yes	Spizellomyces punctatus DAOM BR117		58	55
No Yes	Batrachochytrium dendrobatidis JEL423		37	35
No Yes	Dictyostelium discoideum		55	51
No Yes	Dictyostelium purpureum		52	48
No Yes	Entamoeba dispar		42	40
No Yes	Entamoeba invadens		43	40
No Yes	Entamoeba histolytica 1		48	46
No Yes	Arabidopsis lyrata	Lyrate rockcress	244	232
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	256	241
No Yes	Carica papaya	Papaya	102	99
No Yes	Medicago truncatula	Barrel medic	345	342
No Yes	Glycine max	Soybean	416	411
No Yes	Cucumis sativus	Cucumber	208	201
No Yes	Populus trichocarpa 1.1	Black cottonwood	339	331
No Yes	Vitis vinifera	Wine grape	261	251
No Yes	Brachypodium distachyon		151	146
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	213	209
No Yes	Zea mays subsp. mays	Maize	266	260
No Yes	Sorghum bicolor	Sorghum	164	159
No Yes	Selaginella moellendorffii		146	140
No Yes	Physcomitrella patens subsp. patens		114	108
No Yes	Coccomyxa sp. C-169		43	40
No Yes	Chlorella sp. NC64A		35	32
No Yes	Chlorella vulgaris		47	44
No Yes	Volvox carteri f. nagariensis		41	39
No Yes	Chlamydomonas reinhardtii 4.0		40	37
No Yes	Ostreococcus sp. RCC809		38	36
No Yes	Ostreococcus lucimarinus CCE9901		40	38
No Yes	Ostreococcus tauri		34	33
No Yes	Micromonas sp. RCC299		44	41
No Yes	Micromonas pusilla CCMP1545		41	41
No Yes	Cyanidioschyzon merolae		39	38
No Yes	Giardia lamblia		13	11
No Yes	Trypanosoma cruzi strain CL Brener		48	45
No Yes	Trypanosoma brucei		24	24
No Yes	Leishmania mexicana		22	22
No Yes	Leishmania major strain Friedlin		24	23
No Yes	Leishmania infantum JPCM5		23	23
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		24	23
No Yes	Aureococcus anophagefferens		48	47
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	65	62
No Yes	Phytophthora sojae 1.1		72	66
No Yes	Phytophthora infestans T30-4		69	65
No Yes	Phytophthora capsici		99	92
No Yes	Phaeodactylum tricornutum		105	101
No Yes	Fragilariopsis cylindrus		175	162
No Yes	Thalassiosira pseudonana		134	130
No Yes	Paramecium tetraurelia		165	160
No Yes	Tetrahymena thermophila SB210 1		42	39
No Yes	Babesia bovis T2Bo		20	19
No Yes	Theileria parva		19	18
No Yes	Theileria annulata		24	23
No Yes	Plasmodium falciparum 3D7		15	15
No Yes	Plasmodium vivax SaI-1		16	16
No Yes	Plasmodium knowlesi strain H		15	15
No Yes	Plasmodium yoelii ssp. yoelii 1		14	14
No Yes	Plasmodium chabaudi		14	14
No Yes	Plasmodium berghei ANKA		13	13
No Yes	Cryptosporidium hominis		19	19
No Yes	Cryptosporidium muris		28	28
No Yes	Cryptosporidium parvum Iowa II		23	23
No Yes	Neospora caninum Nc-Liverpool		20	20
No Yes	Neospora caninum		20	20
No Yes	Toxoplasma gondii ME49		20	20
No Yes	Naegleria gruberi		46	43
No Yes	Trichomonas vaginalis		91	89
No Yes	Guillardia theta		2	2
No Yes	Emiliania huxleyi CCMP1516		58	57
No Yes	Candidatus Phytoplasma mali		2	2
No Yes	Aster yellows witches-broom phytoplasma AYWB		1	1
No Yes	Onion yellows phytoplasma OY-M		1	1
No Yes	Acholeplasma laidlawii PG-8A		21	21
No Yes	Mesoplasma florum L1		10	9
No Yes	Ureaplasma parvum ser. 3 ATCC 700970		6	5
No Yes	Ureaplasma urealyticum ser. 10 ATCC 33699		5	4
No Yes	Mycoplasma mycoides ssp. mycoides SC PG1		8	7
No Yes	Mycoplasma capricolum ssp. capricolum ATCC 27343		7	6
No Yes	Mycoplasma crocodyli MP145		6	5
No Yes	Mycoplasma conjunctivae		3	3
No Yes	Mycoplasma penetrans HF-2		9	8
No Yes	Mycoplasma mobile 163K		6	5
No Yes	Mycoplasma arthritidis 158L3-1		4	3
No Yes	Mycoplasma agalactiae PG2		4	3
No Yes	Mycoplasma synoviae 53		5	4
No Yes	Mycoplasma pulmonis UAB CTIP		4	4
No Yes	Mycoplasma pneumoniae M129		6	5
No Yes	Mycoplasma hyopneumoniae 232		4	3
No Yes	Mycoplasma hominis		4	3
No Yes	Mycoplasma genitalium G37		6	5
No Yes	Mycoplasma gallisepticum R		6	5
No Yes	Aminobacterium colombiense DSM 12261		46	44
No Yes	Thermanaerovibrio acidaminovorans DSM 6589		38	37
No Yes	Brachyspira hyodysenteriae WA1		32	31
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis L550		25	24
No Yes	Leptospira interrogans ser. Lai 56601		26	25
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Paris)		37	36
No Yes	Treponema pallidum ssp. pallidum Nichols		5	5
No Yes	Treponema denticola ATCC 35405		35	34
No Yes	Borrelia garinii PBi		4	4
No Yes	Borrelia afzelii PKo		4	4
No Yes	Borrelia burgdorferi B31		4	4
No Yes	Borrelia recurrentis A1		5	5
No Yes	Borrelia duttonii Ly		4	4
No Yes	Borrelia turicatae 91E135		4	4
No Yes	Borrelia hermsii DAH		4	4
No Yes	Rhodopirellula baltica SH 1		49	47
No Yes	Pirellula staleyi DSM 6068		49	47
No Yes	Gardnerella vaginalis 409-05		13	13
No Yes	Bifidobacterium longum NCC2705		39	38
No Yes	Bifidobacterium animalis ssp. lactis AD011		27	27
No Yes	Bifidobacterium dentium Bd1		29	29
No Yes	Bifidobacterium adolescentis ATCC 15703		25	25
No Yes	Kineococcus radiotolerans SRS30216		125	124
No Yes	Catenulispora acidiphila DSM 44928		334	330
No Yes	Stackebrandtia nassauensis DSM 44728		244	242
No Yes	Acidothermus cellulolyticus 11B		42	41
No Yes	Nakamurella multipartita DSM 44233		134	133
No Yes	Geodermatophilus obscurus DSM 43160		103	102
No Yes	Frankia sp. CcI3		76	75
No Yes	Frankia alni ACN14a		145	142
No Yes	Thermobifida fusca YX		72	70
No Yes	Thermomonospora curvata DSM 43183		125	122
No Yes	Streptosporangium roseum DSM 43021		392	386
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		223	222
No Yes	Streptomyces avermitilis MA-4680		244	242
No Yes	Streptomyces scabiei 87.22		273	264
No Yes	Streptomyces coelicolor A3(2)		277	274
No Yes	Actinosynnema mirum DSM 43827		210	209
No Yes	Saccharomonospora viridis DSM 43017		105	103
No Yes	Saccharopolyspora erythraea NRRL 2338		266	265
No Yes	Kribbella flavida DSM 17836		292	291
No Yes	Nocardioides sp. JS614		112	111
No Yes	Propionibacterium acnes KPA171202		42	42
No Yes	Salinispora arenicola CNS-205		120	117
No Yes	Salinispora tropica CNB-440		106	105
No Yes	Gordonia bronchialis DSM 43247		123	122
No Yes	Rhodococcus jostii RHA1		250	248
No Yes	Rhodococcus opacus B4		281	279
No Yes	Rhodococcus erythropolis PR4		196	194
No Yes	Nocardia farcinica IFM 10152		164	163
No Yes	Mycobacterium abscessus		125	124
No Yes	Mycobacterium sp. MCS		128	126
No Yes	Mycobacterium avium ssp. paratuberculosis K-10		68	66
No Yes	Mycobacterium vanbaalenii PYR-1		145	142
No Yes	Mycobacterium tuberculosis H37Rv		63	61
No Yes	Mycobacterium bovis AF2122/97		63	61
No Yes	Mycobacterium ulcerans Agy99		76	75
No Yes	Mycobacterium gilvum PYR-GCK		114	112
No Yes	Mycobacterium marinum M		88	86
No Yes	Mycobacterium smegmatis MC2 155		227	223
No Yes	Mycobacterium leprae TN		21	20
No Yes	Corynebacterium aurimucosum		51	50
No Yes	Corynebacterium kroppenstedtii DSM 44385		26	25
No Yes	Corynebacterium efficiens YS-314		66	65
No Yes	Corynebacterium urealyticum DSM 7109		29	28
No Yes	Corynebacterium jeikeium K411		33	32
No Yes	Corynebacterium glutamicum ATCC 13032 Kitasato		79	78
No Yes	Corynebacterium diphtheriae NCTC 13129		37	36
No Yes	Tropheryma whipplei Twist		4	4
No Yes	Sanguibacter keddieii DSM 10542		107	106
No Yes	Kytococcus sedentarius DSM 20547		53	52
No Yes	Beutenbergia cavernae DSM 12333		135	134
No Yes	Leifsonia xyli ssp. xyli CTCB07		50	49
No Yes	Clavibacter michiganensis ssp. michiganensis NCPPB 382		75	74
No Yes	Jonesia denitrificans DSM 20603		55	54
No Yes	Brachybacterium faecium DSM 4810		76	76
No Yes	Xylanimonas cellulosilytica DSM 15894		67	66
No Yes	Kocuria rhizophila DC2201		55	54
No Yes	Rothia mucilaginosa DY-18		24	23
No Yes	Arthrobacter sp. FB24		151	150
No Yes	Arthrobacter chlorophenolicus A6		135	134
No Yes	Arthrobacter aurescens TC1		155	154
No Yes	Renibacterium salmoninarum ATCC 33209		98	97
No Yes	Micrococcus luteus NCTC 2665		40	40
No Yes	Cryptobacterium curtum DSM 15641		30	28
No Yes	Eggerthella lenta DSM 2243		76	72
No Yes	Slackia heliotrinireducens DSM 20476		74	68
No Yes	Atopobium parvulum DSM 20469		35	33
No Yes	Conexibacter woesei DSM 14684		220	219
No Yes	Rubrobacter xylanophilus DSM 9941		89	88
No Yes	Acidimicrobium ferrooxidans DSM 10331		38	38
No Yes	Denitrovibrio acetiphilus DSM 12809		55	55
No Yes	Deferribacter desulfuricans SSM1		37	36
No Yes	Kosmotoga olearia TBF 19.5.1		42	41
No Yes	Petrotoga mobilis SJ95		35	34
No Yes	Fervidobacterium nodosum Rt17-B1		27	26
No Yes	Thermosipho melanesiensis BI429		31	30
No Yes	Thermosipho africanus TCF52B		34	33
No Yes	Thermotoga lettingae TMO		49	48
No Yes	Thermotoga sp. RQ2		36	35
No Yes	Thermotoga naphthophila RKU-10		39	38
No Yes	Thermotoga petrophila RKU-1		37	36
No Yes	Thermotoga neapolitana DSM 4359		37	36
No Yes	Thermotoga maritima MSB8		36	35
No Yes	Dehalococcoides sp. CBDB1		34	34
No Yes	Dehalococcoides ethenogenes 195		26	26
No Yes	Thermomicrobium roseum DSM 5159		30	28
No Yes	Sphaerobacter thermophilus DSM 20745		54	53
No Yes	Herpetosiphon aurantiacus ATCC 23779		74	72
No Yes	Roseiflexus sp. RS-1		47	46
No Yes	Roseiflexus castenholzii DSM 13941		50	49
No Yes	Chloroflexus sp. Y-400-fl		60	58
No Yes	Chloroflexus aggregans DSM 9485		61	60
No Yes	Chloroflexus aurantiacus J-10-fl		60	58
No Yes	Sulfurihydrogenibium sp. YO3AOP1		16	16
No Yes	Sulfurihydrogenibium azorense Az-Fu1		16	16
No Yes	Persephonella marina EX-H1		23	23
No Yes	Hydrogenobaculum sp. Y04AAS1		10	10
No Yes	Thermocrinis albus DSM 14484		9	9
No Yes	Aquifex aeolicus VF5		11	11
No Yes	Hydrogenobacter thermophilus TK-6		13	13
No Yes	Gemmatimonas aurantiaca T-27		57	56
No Yes	Fibrobacter succinogenes ssp. succinogenes S85		30	28
No Yes	Candidatus Koribacter versatilis Ellin345		78	75
No Yes	Candidatus Solibacter usitatus Ellin6076		143	141
No Yes	Acidobacterium capsulatum ATCC 51196		54	53
No Yes	Elusimicrobium minutum Pei191		15	14
No Yes	uncultured Termite group 1 bacterium phylotype Rs-D17		5	4
No Yes	Pelodictyon phaeoclathratiforme BU-1		22	22
No Yes	Pelodictyon luteolum DSM 273		21	20
No Yes	Chlorobium chlorochromatii CaD3		21	20
No Yes	Chlorobium phaeobacteroides DSM 266		29	28
No Yes	Chlorobium phaeovibrioides DSM 265		22	21
No Yes	Chlorobium limicola DSM 245		28	27
No Yes	Chlorobaculum parvum NCIB 8327		22	21
No Yes	Chlorobium tepidum TLS		22	21
No Yes	Chloroherpeton thalassium ATCC 35110		24	23
No Yes	Prosthecochloris aestuarii DSM 271		29	28
No Yes	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2		4	4
No Yes	Prevotella ruminicola 23		22	22
No Yes	Parabacteroides distasonis ATCC 8503		29	29
No Yes	Porphyromonas gingivalis W83		18	18
No Yes	Bacteroides vulgatus ATCC 8482		33	33
No Yes	Bacteroides thetaiotaomicron VPI-5482		43	43
No Yes	Bacteroides fragilis NCTC 9343		34	34
No Yes	Candidatus Amoebophilus asiaticus 5a2		7	7
No Yes	Salinibacter ruber DSM 13855		27	26
No Yes	Rhodothermus marinus DSM 4252		32	31
No Yes	Chitinophaga pinensis DSM 2588		144	143
No Yes	Dyadobacter fermentans DSM 18053		93	93
No Yes	Cytophaga hutchinsonii ATCC 33406		40	39
No Yes	Spirosoma linguale DSM 74		97	97
No Yes	Pedobacter heparinus DSM 2366		70	70
No Yes	Zunongwangia profunda SM-A87		57	57
No Yes	Gramella forsetii KT0803		41	41
No Yes	Robiginitalea biformata HTCC2501		31	31
No Yes	Flavobacteriaceae bacterium 3519-10		26	26
No Yes	Capnocytophaga ochracea DSM 7271		16	16
No Yes	Flavobacterium psychrophilum JIP02/86		19	19
No Yes	Flavobacterium johnsoniae UW101		86	86
No Yes	Blattabacterium sp. Bge		2	2
No Yes	Dictyoglomus turgidum DSM 6724		32	31
No Yes	Dictyoglomus thermophilum H-6-12		29	28
No Yes	Candidatus Protochlamydia amoebophila UWE25		9	8
No Yes	Chlamydophila pneumoniae TW-183		4	4
No Yes	Chlamydophila caviae GPIC		4	4
No Yes	Chlamydophila felis Fe/C-56		4	4
No Yes	Chlamydophila abortus S26/3		3	3
No Yes	Chlamydia muridarum Nigg		3	3
No Yes	Chlamydia trachomatis D/UW-3/CX		3	3
No Yes	Coraliomargarita akajimensis DSM 45221		33	32
No Yes	Opitutus terrae PB90-1		51	51
No Yes	Methylacidiphilum infernorum V4		14	14
No Yes	Akkermansia muciniphila ATCC BAA-835		24	24
No Yes	Thermodesulfovibrio yellowstonii DSM 11347		20	19
No Yes	Streptobacillus moniliformis DSM 12112		19	17
No Yes	Sebaldella termitidis ATCC 33386		138	136
No Yes	Leptotrichia buccalis DSM 1135		29	28
No Yes	Fusobacterium nucleatum ssp. nucleatum ATCC 25586		33	32
No Yes	Thermobaculum terrenum ATCC BAA-798		60	58
No Yes	Deinococcus deserti VCD115		46	45
No Yes	Deinococcus geothermalis DSM 11300		36	35
No Yes	Deinococcus radiodurans R1		50	49
No Yes	Meiothermus ruber DSM 1279		63	62
No Yes	Thermus thermophilus HB27 (First sequenced)		30	29
No Yes	Natranaerobius thermophilus JW/NM-WN-LF		51	48
No Yes	Symbiobacterium thermophilum IAM 14863		62	59
No Yes	Anaerococcus prevotii DSM 20548		39	38
No Yes	Finegoldia magna ATCC 29328		33	31
No Yes	Clostridiales genomosp. BVAB3 UPII9-5		34	33
No Yes	Anaerocellum thermophilum DSM 6725		49	48
No Yes	Candidatus Desulforudis audaxviator MP104C		28	26
No Yes	Pelotomaculum thermopropionicum SI		48	46
No Yes	Desulfitobacterium hafniense Y51		165	163
No Yes	Desulfotomaculum reducens MI-1		58	55
No Yes	Desulfotomaculum acetoxidans DSM 771		73	71
No Yes	Eubacterium rectale ATCC 33656		61	60
No Yes	Eubacterium eligens ATCC 27750		36	35
No Yes	Syntrophomonas wolfei ssp. wolfei Goettingen		42	39
No Yes	Heliobacterium modesticaldum Ice1		48	45
No Yes	Alkaliphilus oremlandii OhILAs		64	62
No Yes	Alkaliphilus metalliredigens QYMF		94	90
No Yes	Clostridium phytofermentans ISDg		96	95
No Yes	Clostridium novyi NT		47	46
No Yes	Clostridium kluyveri DSM 555		102	101
No Yes	Clostridium cellulolyticum H10		55	54
No Yes	Clostridium beijerinckii NCIMB 8052		178	177
No Yes	Clostridium thermocellum ATCC 27405		49	48
No Yes	Clostridium tetani E88		56	55
No Yes	Clostridium perfringens 13		64	61
No Yes	Clostridium difficile 630		130	125
No Yes	Clostridium botulinum A ATCC 3502		93	91
No Yes	Clostridium acetobutylicum ATCC 824		100	99
No Yes	Veillonella parvula DSM 2008		38	37
No Yes	Acidaminococcus fermentans DSM 20731		80	78
No Yes	Caldicellulosiruptor saccharolyticus DSM 8903		55	54
No Yes	Coprothermobacter proteolyticus DSM 5265		18	17
No Yes	Carboxydothermus hydrogenoformans Z-2901		56	53
No Yes	Moorella thermoacetica ATCC 39073		68	64
No Yes	Ammonifex degensii KC4		35	33
No Yes	Thermoanaerobacter pseudethanolicus ATCC 33223		53	50
No Yes	Thermoanaerobacter sp. X514		61	58
No Yes	Thermoanaerobacter tengcongensis MB4		51	48
No Yes	Thermoanaerobacter italicus Ab9		57	53
No Yes	Halothermothrix orenii H 168		48	47
No Yes	Enterococcus faecalis V583		78	77
No Yes	Oenococcus oeni PSU-1		42	41
No Yes	Leuconostoc citreum KM20		43	42
No Yes	Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293		49	48
No Yes	Lactobacillus casei ATCC 334		67	66
No Yes	Lactobacillus crispatus ST1		36	35
No Yes	Lactobacillus rhamnosus GG		75	74
No Yes	Lactobacillus johnsonii NCC 533		39	38
No Yes	Lactobacillus salivarius UCC118		44	43
No Yes	Lactobacillus fermentum IFO 3956		45	44
No Yes	Lactobacillus sakei ssp. sakei 23K		66	65
No Yes	Lactobacillus reuteri DSM 20016		46	45
No Yes	Lactobacillus gasseri ATCC 33323		41	40
No Yes	Lactobacillus plantarum WCFS1		118	117
No Yes	Lactobacillus helveticus DPC 4571		29	28
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842		37	36
No Yes	Lactobacillus brevis ATCC 367		83	82
No Yes	Lactobacillus acidophilus NCFM		43	42
No Yes	Pediococcus pentosaceus ATCC 25745		60	59
No Yes	Lactococcus lactis ssp. lactis Il1403		53	52
No Yes	Streptococcus gallolyticus UCN34		68	67
No Yes	Streptococcus equi ssp. zooepidemicus MGCS10565		40	39
No Yes	Streptococcus dysgalactiae ssp. equisimilis GGS_124		44	43
No Yes	Streptococcus mitis B6		39	38
No Yes	Streptococcus uberis 0140J		50	49
No Yes	Streptococcus pyogenes M1 GAS		41	40
No Yes	Streptococcus pneumoniae TIGR4 (Virulent)		41	39
No Yes	Streptococcus agalactiae NEM316		43	42
No Yes	Streptococcus mutans UA159		53	52
No Yes	Streptococcus thermophilus LMG 18311 (Older strain)		29	28
No Yes	Streptococcus suis 05ZYH33		47	46
No Yes	Streptococcus sanguinis SK36		58	57
No Yes	Streptococcus gordonii Challis subCH1		51	50
No Yes	Exiguobacterium sp. AT1b		76	75
No Yes	Exiguobacterium sibiricum 255-15		85	84
No Yes	Bacillus tusciae DSM 2912		70	68
No Yes	Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446		59	58
No Yes	Brevibacillus brevis NBRC 100599		201	200
No Yes	Paenibacillus sp. JDR-2		218	217
No Yes	Listeria welshimeri ser. 6b SLCC5334		97	95
No Yes	Listeria innocua Clip11262		104	102
No Yes	Listeria seeligeri ser. 1/2b SLCC3954		100	98
No Yes	Listeria monocytogenes EGD-e		107	105
No Yes	Lysinibacillus sphaericus C3-41		124	123
No Yes	Oceanobacillus iheyensis HTE831		84	81
No Yes	Anoxybacillus flavithermus WK1		59	57
No Yes	Geobacillus sp. WCH70		55	54
No Yes	Geobacillus thermodenitrificans NG80-2		72	71
No Yes	Geobacillus kaustophilus HTA426		70	68
No Yes	Bacillus subtilis ssp. subtilis 168		133	131
No Yes	Bacillus licheniformis ATCC 14580		132	130
No Yes	Bacillus amyloliquefaciens FZB42		122	120
No Yes	Bacillus halodurans C-125		107	105
No Yes	Bacillus weihenstephanensis KBAB4		146	145
No Yes	Bacillus thuringiensis ser. konkukian 97-27		147	146
No Yes	Bacillus cereus ATCC 14579		144	143
No Yes	Bacillus anthracis Ames Ancestor		146	145
No Yes	Bacillus pseudofirmus OF4		77	73
No Yes	Bacillus clausii KSM-K16		133	132
No Yes	Bacillus pumilus SAFR-032		106	104
No Yes	Bacillus megaterium QM B1551		173	172
No Yes	Macrococcus caseolyticus JCSC5402		48	48
No Yes	Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305		77	76
No Yes	Staphylococcus lugdunensis HKU09-01		73	70
No Yes	Staphylococcus haemolyticus JCSC1435		65	63
No Yes	Staphylococcus epidermidis RP62A		63	61
No Yes	Staphylococcus carnosus ssp. carnosus TM300		74	73
No Yes	Staphylococcus aureus ssp. aureus NCTC 8325		71	66
No Yes	Nautilia profundicola AmH		16	16
No Yes	Sulfurospirillum deleyianum DSM 6946		26	26
No Yes	Arcobacter butzleri RM4018		30	29
No Yes	Campylobacter hominis ATCC BAA-381		11	11
No Yes	Campylobacter lari RM2100		13	13
No Yes	Campylobacter curvus 525.92		21	21
No Yes	Campylobacter concisus 13826		15	15
No Yes	Campylobacter jejuni ssp. jejuni NCTC 11168		14	14
No Yes	Campylobacter fetus ssp. fetus 82-40		18	18
No Yes	Sulfurimonas denitrificans DSM 1251		17	17
No Yes	Wolinella succinogenes DSM 1740		23	23
No Yes	Helicobacter hepaticus ATCC 51449		15	15
No Yes	Helicobacter mustelae 12198		6	6
No Yes	Helicobacter acinonychis Sheeba		6	6
No Yes	Helicobacter pylori 26695		4	4
No Yes	Nitratiruptor sp. SB155-2		15	15
No Yes	Sulfurovum sp. NBC37-1		17	17
No Yes	Bdellovibrio bacteriovorus HD100		37	36
No Yes	Syntrophus aciditrophicus SB		30	28
No Yes	Syntrophobacter fumaroxidans MPOB		44	42
No Yes	Desulfotalea psychrophila LSv54		32	30
No Yes	Desulfatibacillum alkenivorans AK-01		72	69
No Yes	Desulfobacterium autotrophicum HRM2		64	62
No Yes	Desulfococcus oleovorans Hxd3		33	30
No Yes	Desulfohalobium retbaense DSM 5692		37	35
No Yes	Desulfomicrobium baculatum DSM 4028		47	45
No Yes	Lawsonia intracellularis PHE/MN1-00		8	7
No Yes	Desulfovibrio magneticus RS-1		52	50
No Yes	Desulfovibrio vulgaris Hildenborough		46	44
No Yes	Desulfovibrio salexigens DSM 2638		66	64
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans G20		57	55
No Yes	Pelobacter propionicus DSM 2379		42	41
No Yes	Pelobacter carbinolicus DSM 2380		51	48
No Yes	Geobacter uraniireducens Rf4		58	55
No Yes	Geobacter sp. FRC-32		50	47
No Yes	Geobacter lovleyi SZ		38	34
No Yes	Geobacter bemidjiensis Bem		54	51
No Yes	Geobacter sulfurreducens PCA		50	47
No Yes	Geobacter metallireducens GS-15		42	39
No Yes	Haliangium ochraceum DSM 14365		65	62
No Yes	Sorangium cellulosum So ce 56		125	124
No Yes	Anaeromyxobacter sp. Fw109-5		47	44
No Yes	Anaeromyxobacter dehalogenans 2CP-C		62	59
No Yes	Myxococcus xanthus DK 1622		90	86
No Yes	Magnetococcus sp. MC-1		31	31
No Yes	Sideroxydans lithotrophicus ES-1		33	32
No Yes	Aromatoleum aromaticum EbN1		58	57
No Yes	Dechloromonas aromatica RCB		77	74
No Yes	Thauera sp. MZ1T		81	80
No Yes	Laribacter hongkongensis HLHK9		58	55
No Yes	Chromobacterium violaceum ATCC 12472		138	137
No Yes	Neisseria meningitidis Z2491		26	25
No Yes	Neisseria gonorrhoeae FA 1090		27	26
No Yes	Methylotenera mobilis JLW8		40	39
No Yes	Methylovorus sp. SIP3-4		44	43
No Yes	Methylobacillus flagellatus KT		38	37
No Yes	Thiobacillus denitrificans ATCC 25259		34	33
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		58	57
No Yes	Methylibium petroleiphilum PM1		91	90
No Yes	Leptothrix cholodnii SP-6		104	103
No Yes	Ralstonia eutropha JMP134		309	308
No Yes	Cupriavidus taiwanensis		263	262
No Yes	Ralstonia metallidurans CH34		272	270
No Yes	Ralstonia pickettii 12J		177	176
No Yes	Ralstonia solanacearum GMI1000		103	102
No Yes	Polynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1		31	30
No Yes	Burkholderia phytofirmans PsJN		370	368
No Yes	Burkholderia phymatum STM815		224	221
No Yes	Burkholderia thailandensis E264		208	205
No Yes	Burkholderia pseudomallei K96243		215	212
No Yes	Burkholderia mallei ATCC 23344		181	178
No Yes	Burkholderia sp. 383		459	453
No Yes	Burkholderia ambifaria AMMD		353	349
No Yes	Burkholderia cenocepacia AU 1054		370	366
No Yes	Burkholderia multivorans ATCC 17616		312	307
No Yes	Burkholderia vietnamiensis G4		276	272
No Yes	Burkholderia xenovorans LB400		379	375
No Yes	Burkholderia glumae BGR1		200	197
No Yes	Verminephrobacter eiseniae EF01-2		161	157
No Yes	Delftia acidovorans SPH-1		321	316
No Yes	Polaromonas sp. JS666		219	218
No Yes	Polaromonas naphthalenivorans CJ2		118	117
No Yes	Variovorax paradoxus S110		307	305
No Yes	Rhodoferax ferrireducens T118		115	113
No Yes	Diaphorobacter sp. TPSY		107	106
No Yes	Acidovorax sp. JS42		109	108
No Yes	Acidovorax citrulli AAC00-1		141	140
No Yes	Comamonas sp. CNB-1		215	212
No Yes	Herminiimonas arsenicoxydans		70	69
No Yes	Janthinobacterium sp. Marseille		120	119
No Yes	Bordetella petrii DSM 12804		255	254
No Yes	Bordetella avium 197N		137	134
No Yes	Bordetella pertussis Tohama I		175	174
No Yes	Bordetella parapertussis 12822		252	251
No Yes	Bordetella bronchiseptica RB50		304	303
No Yes	Nitrosospira multiformis ATCC 25196		31	30
No Yes	Nitrosomonas eutropha C91		23	22
No Yes	Nitrosomonas europaea ATCC 19718		21	20
No Yes	Caulobacter sp. K31		132	130
No Yes	Caulobacter crescentus CB15		86	84
No Yes	Caulobacter segnis ATCC 21756		134	129
No Yes	Phenylobacterium zucineum HLK1		78	77
No Yes	Erythrobacter litoralis HTCC2594		35	34
No Yes	Sphingopyxis alaskensis RB2256		74	71
No Yes	Novosphingobium aromaticivorans DSM 12444		69	67
No Yes	Sphingobium japonicum UT26S		95	93
No Yes	Sphingomonas wittichii RW1		160	159
No Yes	Zymomonas mobilis ssp. mobilis ZM4		32	32
No Yes	Maricaulis maris MCS10		61	60
No Yes	Hirschia baltica ATCC 49814		74	71
No Yes	Hyphomonas neptunium ATCC 15444		69	68
No Yes	Dinoroseobacter shibae DFL 12		91	90
No Yes	Jannaschia sp. CCS1		137	136
No Yes	Ruegeria sp. TM1040		103	102
No Yes	Ruegeria pomeroyi DSS-3		150	148
No Yes	Roseobacter denitrificans OCh 114		99	98
No Yes	Rhodobacter sphaeroides 2.4.1		92	90
No Yes	Rhodobacter capsulatus SB1003		76	75
No Yes	Paracoccus denitrificans PD1222		158	153
No Yes	Magnetospirillum magneticum AMB-1		76	75
No Yes	Rhodospirillum centenum SW		64	62
No Yes	Rhodospirillum rubrum ATCC 11170		99	98
No Yes	Azospirillum sp. B510		58	58
No Yes	Granulibacter bethesdensis CGDNIH1		45	44
No Yes	Gluconacetobacter diazotrophicus PAl 5		94	93
No Yes	Gluconobacter oxydans 621H		50	50
No Yes	Acetobacter pasteurianus IFO 3283-01		53	52
No Yes	alpha proteobacterium IMCC1322		44	43
No Yes	Candidatus Pelagibacter ubique HTCC1062		12	11
No Yes	Neorickettsia sennetsu Miyayama		3	3
No Yes	Neorickettsia risticii Illinois		3	3
No Yes	Ehrlichia chaffeensis Arkansas		3	3
No Yes	Ehrlichia canis Jake		3	3
No Yes	Ehrlichia ruminantium Welgevonden		4	4
No Yes	Anaplasma phagocytophilum HZ		3	3
No Yes	Anaplasma marginale St. Maries		3	3
No Yes	Anaplasma centrale Israel		3	3
No Yes	Orientia tsutsugamushi Boryong		3	3
No Yes	Rickettsia bellii RML369-C		4	4
No Yes	Rickettsia canadensis McKiel		2	2
No Yes	Rickettsia typhi Wilmington		2	2
No Yes	Rickettsia prowazekii Madrid E		2	2
No Yes	Rickettsia peacockii Rustic		3	3
No Yes	Rickettsia felis URRWXCal2		4	4
No Yes	Rickettsia massiliae MTU5		3	3
No Yes	Rickettsia africae ESF-5		4	4
No Yes	Rickettsia akari Hartford		3	3
No Yes	Rickettsia rickettsii Sheila Smith		4	4
No Yes	Rickettsia conorii Malish 7		4	4
No Yes	Wolbachia endosymbiont of Culex_quinquefasciatus Pel		2	2
No Yes	Wolbachia endosymbiont of Drosophila melanogaster (Genus only)		3	3
No Yes	Wolbachia endosymbiont TRS of Brugia malayi		2	2
No Yes	Wolbachia sp. wRi		3	3
No Yes	Xanthobacter autotrophicus Py2		141	137
No Yes	Azorhizobium caulinodans ORS 571		187	183
No Yes	Methylobacterium chloromethanicum CM4		100	100
No Yes	Methylobacterium extorquens PA1		103	103
No Yes	Methylobacterium sp. 4-46		170	168
No Yes	Methylobacterium populi BJ001		106	106
No Yes	Methylobacterium nodulans ORS 2060		185	184
No Yes	Methylobacterium radiotolerans JCM 2831		139	139
No Yes	Ochrobactrum anthropi ATCC 49188		180	177
No Yes	Brucella microti CCM 4915		101	100
No Yes	Brucella canis ATCC 23365		95	94
No Yes	Brucella suis 1330		94	93
No Yes	Brucella melitensis bv. 1 16M		98	97
No Yes	Brucella ovis ATCC 25840		87	86
No Yes	Brucella abortus bv. 1 9-941		97	96
No Yes	Sinorhizobium medicae WSM419		128	126
No Yes	Sinorhizobium meliloti 1021		119	116
No Yes	Rhizobium etli CFN 42		145	144
No Yes	Rhizobium sp. NGR234		120	117
No Yes	Rhizobium leguminosarum bv. viciae 3841		205	199
No Yes	Agrobacterium vitis S4		148	146
No Yes	Agrobacterium radiobacter K84		318	310
No Yes	Agrobacterium tumefaciens C58		187	186
No Yes	Candidatus Liberibacter asiaticus psy62		6	6
No Yes	Chelativorans sp. BNC1		145	140
No Yes	Parvibaculum lavamentivorans DS-1		79	78
No Yes	Mesorhizobium loti MAFF303099		267	265
No Yes	Methylocella silvestris BL2		81	78
No Yes	Beijerinckia indica ssp. indica ATCC 9039		102	100
No Yes	Oligotropha carboxidovorans OM5		79	76
No Yes	Rhodopseudomonas palustris CGA009		118	117
No Yes	Nitrobacter winogradskyi Nb-255		40	39
No Yes	Nitrobacter hamburgensis X14		47	46
No Yes	Bradyrhizobium sp. ORS278		178	177
No Yes	Bradyrhizobium japonicum USDA 110		243	242
No Yes	Bartonella tribocorum CIP 105476		13	13
No Yes	Bartonella henselae Houston-1		12	12
No Yes	Bartonella grahamii as4aup		12	12
No Yes	Bartonella quintana Toulouse		10	10
No Yes	Bartonella bacilliformis KC583		9	9
No Yes	Acidithiobacillus ferrooxidans ATCC 23270		48	47
No Yes	Mannheimia succiniciproducens MBEL55E		55	53
No Yes	Aggregatibacter aphrophilus NJ8700		31	29
No Yes	Aggregatibacter actinomycetemcomitans D11S-1		33	32
No Yes	Haemophilus somnus 129PT		31	31
No Yes	Pasteurella multocida ssp. multocida Pm70		34	32
No Yes	Haemophilus parasuis SH0165		36	35
No Yes	Haemophilus ducreyi 35000HP		22	21
No Yes	Haemophilus influenzae Rd KW20		27	26
No Yes	Actinobacillus succinogenes 130Z		57	55
No Yes	Actinobacillus pleuropneumoniae L20		36	35
No Yes	Tolumonas auensis DSM 9187		99	99
No Yes	Aeromonas salmonicida ssp. salmonicida A449		107	106
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		119	118
No Yes	Aliivibrio salmonicida LFI1238		72	72
No Yes	Vibrio fischeri ES114		100	100
No Yes	Vibrio parahaemolyticus RIMD 2210633		135	135
No Yes	Vibrio harveyi ATCC BAA-1116		123	123
No Yes	Vibrio sp. Ex25		130	130
No Yes	Vibrio splendidus LGP32		139	139
No Yes	Vibrio vulnificus YJ016 (Good annotation)		121	121
No Yes	Vibrio cholerae O1 biov. El Tor N16961		81	81
No Yes	Photobacterium profundum SS9		150	149
No Yes	Psychromonas ingrahamii 37		63	63
No Yes	Idiomarina loihiensis L2TR		49	48
No Yes	Shewanella piezotolerans WP3		108	107
No Yes	Shewanella loihica PV-4		99	98
No Yes	Shewanella halifaxensis HAW-EB4		104	102
No Yes	Shewanella sediminis HAW-EB3		130	129
No Yes	Shewanella denitrificans OS217		62	61
No Yes	Shewanella pealeana ATCC 700345		109	108
No Yes	Shewanella oneidensis MR-1		96	94
No Yes	Shewanella baltica OS155		98	97
No Yes	Shewanella woodyi ATCC 51908		114	113
No Yes	Shewanella sp. MR-7		90	88
No Yes	Shewanella amazonensis SB2B		83	82
No Yes	Shewanella violacea DSS12		90	89
No Yes	Shewanella frigidimarina NCIMB 400		97	96
No Yes	Shewanella putrefaciens CN-32		94	93
No Yes	Colwellia psychrerythraea 34H		115	115
No Yes	Pseudoalteromonas atlantica T6c		103	100
No Yes	Pseudoalteromonas haloplanktis TAC125		76	74
No Yes	Teredinibacter turnerae T7901		63	62
No Yes	Saccharophagus degradans 2-40		57	56
No Yes	Marinobacter aquaeolei VT8		62	61
No Yes	Alteromonas macleodii Deep ecotype		61	60
No Yes	Hahella chejuensis KCTC 2396		136	135
No Yes	Alcanivorax borkumensis SK2		43	42
No Yes	Marinomonas sp. MWYL1		185	183
No Yes	Chromohalobacter salexigens DSM 3043		117	114
No Yes	Methylococcus capsulatus Bath		28	27
No Yes	Dichelobacter nodosus VCS1703A		11	10
No Yes	Stenotrophomonas maltophilia R551-3		116	113
No Yes	Xylella fastidiosa 9a5c		24	23
No Yes	Xanthomonas axonopodis pv. citri 306		80	78
No Yes	Xanthomonas albilineans		42	41
No Yes	Xanthomonas oryzae pv. oryzae KACC10331		54	52
No Yes	Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)		87	85
No Yes	Halothiobacillus neapolitanus c2		34	34
No Yes	Alkalilimnicola ehrlichii MLHE-1		40	39
No Yes	Thioalkalivibrio sp. HL-EbGR7		42	41
No Yes	Halorhodospira halophila SL1		31	30
No Yes	Allochromatium vinosum DSM 180		44	40
No Yes	Nitrosococcus halophilus Nc4		32	31
No Yes	Nitrosococcus oceani ATCC 19707		26	25
No Yes	Coxiella burnetii RSA 493		12	11
No Yes	Legionella longbeachae NSW150		39	38
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		31	30
No Yes	Kangiella koreensis DSM 16069		37	36
No Yes	Baumannia cicadellinicola Hc		7	7
No Yes	Candidatus Vesicomyosocius okutanii HA		5	5
No Yes	Candidatus Ruthia magnifica Cm		5	5
No Yes	Cronobacter turicensis z3032		114	112
No Yes	Cronobacter sakazakii ATCC BAA-894		110	108
No Yes	Dickeya zeae Ech1591		133	133
No Yes	Dickeya dadantii Ech703		134	134
No Yes	Candidatus Hamiltonella defensa 5AT		11	10
No Yes	Candidatus Blochmannia floridanus		4	4
No Yes	Pectobacterium wasabiae WPP163		115	115
No Yes	Pectobacterium atrosepticum SCRI1043		136	136
No Yes	Pectobacterium carotovorum ssp. carotovorum PC1		133	133
No Yes	Sodalis glossinidius morsitans		55	55
No Yes	Pantoea ananatis LMG 20103		136	135
No Yes	Wigglesworthia glossinidia		2	2
No Yes	Photorhabdus asymbiotica		70	69
No Yes	Photorhabdus luminescens ssp. laumondii TTO1		81	79
No Yes	Edwardsiella ictaluri 93-146		71	70
No Yes	Edwardsiella tarda EIB202		80	79
No Yes	Yersinia pseudotuberculosis IP 32953		86	84
No Yes	Yersinia pestis CO92		78	78
No Yes	Yersinia enterocolitica ssp. enterocolitica 8081		106	105
No Yes	Xenorhabdus bovienii SS-2004		71	70
No Yes	Shigella sonnei Ss046		89	88
No Yes	Shigella flexneri 2a 2457T		98	97
No Yes	Shigella dysenteriae Sd197		86	85
No Yes	Shigella boydii Sb227		91	90
No Yes	Serratia proteamaculans 568		203	201
No Yes	Salmonella enterica ssp. enterica ser. Typhimurium LT2		128	126
No Yes	Proteus mirabilis HI4320		77	76
No Yes	Klebsiella variicola At-22		215	213
No Yes	Klebsiella pneumoniae ssp. pneumoniae MGH 78578		196	194
No Yes	Escherichia fergusonii ATCC 35469		112	111
No Yes	Escherichia coli K-12 subMG1655		114	113
No Yes	Erwinia tasmaniensis Et1/99		83	83
No Yes	Erwinia pyrifoliae Ep1/96		68	68
No Yes	Erwinia amylovora ATCC 49946		70	69
No Yes	Enterobacter sp. 638		126	125
No Yes	Citrobacter rodentium ICC168		124	122
No Yes	Citrobacter koseri ATCC BAA-895		117	116
No Yes	Azotobacter vinelandii DJ		133	131
No Yes	Pseudomonas entomophila L48		179	176
No Yes	Pseudomonas syringae pv. tomato DC3000		147	145
No Yes	Pseudomonas stutzeri A1501		77	74
No Yes	Pseudomonas putida KT2440		203	199
No Yes	Pseudomonas fluorescens Pf-5		244	242
No Yes	Pseudomonas mendocina ymp		129	128
No Yes	Pseudomonas aeruginosa PAO1		214	211
No Yes	Cellvibrio japonicus Ueda107		53	52
No Yes	Psychrobacter sp. PRwf-1		36	35
No Yes	Psychrobacter arcticus 273-4		30	29
No Yes	Psychrobacter cryohalolentis K5		45	44
No Yes	Acinetobacter sp. ADP1		102	100
No Yes	Acinetobacter baumannii ATCC 17978		75	74
No Yes	Thiomicrospira crunogena XCL-2		26	26
No Yes	Francisella philomiragia ssp. philomiragia ATCC 25017		26	26
No Yes	Francisella tularensis ssp. tularensis SCHU S4		20	20
No Yes	Gloeobacter violaceus PCC 7421		66	63
No Yes	Acaryochloris marina MBIC11017		61	60
No Yes	Prochlorococcus marinus MIT 9313		17	16
No Yes	Nostoc punctiforme PCC 73102		55	54
No Yes	Nostoc sp. PCC 7120		44	43
No Yes	Anabaena variabilis ATCC 29413		49	48
No Yes	Trichodesmium erythraeum IMS101		27	26
No Yes	Thermosynechococcus elongatus BP-1		22	21
No Yes	cyanobacterium UCYN-A		11	10
No Yes	Cyanothece sp. ATCC 51142		38	37
No Yes	Synechocystis sp. PCC 6803		28	27
No Yes	Synechococcus elongatus PCC 6301		30	29
No Yes	Microcystis aeruginosa NIES-843		28	28
No Yes	Nitrosopumilus maritimus SCM1		59	54
No Yes	Nanoarchaeum equitans Kin4-M		9	9
No Yes	Candidatus Korarchaeum cryptofilum OPF8		38	37
No Yes	Methanocella paludicola SANAE		82	77
No Yes	Methanosaeta thermophila PT		39	38
No Yes	Methanococcoides burtonii DSM 6242		70	65
No Yes	Methanosarcina acetivorans C2A		119	115
No Yes	Methanosarcina mazei Go1		110	107
No Yes	Methanosarcina barkeri Fusaro		110	103
No Yes	Methanohalophilus mahii DSM 5219		55	54
No Yes	Methanosphaerula palustris E1-9c		68	67
No Yes	Candidatus Methanoregula boonei 6A8		58	56
No Yes	Methanospirillum hungatei JF-1		65	63
No Yes	Methanocorpusculum labreanum Z		40	40
No Yes	Methanoculleus marisnigri JR1		55	49
No Yes	Methanopyrus kandleri AV19		24	23
No Yes	Ferroglobus placidus DSM 10642		82	77
No Yes	Archaeoglobus profundus DSM 5631		54	53
No Yes	Archaeoglobus fulgidus DSM 4304		75	72
No Yes	Thermococcus onnurineus NA1		56	52
No Yes	Thermococcus kodakarensis KOD1		58	56
No Yes	Thermococcus gammatolerans EJ3		62	60
No Yes	Thermococcus sibiricus MM 739		53	52
No Yes	Pyrococcus horikoshii OT3		59	58
No Yes	Pyrococcus abyssi GE5		62	61
No Yes	Pyrococcus furiosus DSM 3638		57	56
No Yes	Thermoplasma volcanium GSS1		38	38
No Yes	Thermoplasma acidophilum DSM 1728		44	44
No Yes	Picrophilus torridus DSM 9790		45	43
No Yes	Haloquadratum walsbyi DSM 16790		60	59
No Yes	Halomicrobium mukohataei DSM 12286		82	82
No Yes	Halorhabdus utahensis DSM 12940		84	83
No Yes	Haloterrigena turkmenica DSM 5511		104	102
No Yes	Natronomonas pharaonis DSM 2160		65	63
No Yes	Natrialba magadii ATCC 43099		91	90
No Yes	Halorubrum lacusprofundi ATCC 49239		89	86
No Yes	Haloferax volcanii DS2		87	85
No Yes	Halobacterium salinarum R1		56	55
No Yes	Halobacterium sp. NRC-1		56	55
No Yes	Haloarcula marismortui ATCC 43049		89	87
No Yes	Methanocaldococcus sp. FS406-22		38	37
No Yes	Methanocaldococcus fervens AG86		27	27
No Yes	Methanocaldococcus vulcanius M7		30	30
No Yes	Methanocaldococcus jannaschii DSM 2661		33	33
No Yes	Methanococcus aeolicus Nankai-3		25	25
No Yes	Methanococcus maripaludis S2		34	34
No Yes	Methanococcus vannielii SB		34	34
No Yes	Methanothermobacter thermautotrophicus Delta H		33	33
No Yes	Methanosphaera stadtmanae DSM 3091		22	22
No Yes	Methanobrevibacter ruminantium M1		37	37
No Yes	Methanobrevibacter smithii ATCC 35061		31	31
No Yes	uncultured methanogenic archaeon RC-I		93	85
No Yes	Aciduliprofundum boonei T469		46	42
No Yes	Hyperthermus butylicus DSM 5456		29	29
No Yes	Aeropyrum pernix K1		35	35
No Yes	Ignicoccus hospitalis KIN4/I		19	19
No Yes	Staphylothermus marinus F1		31	31
No Yes	Desulfurococcus kamchatkensis 1221n		20	20
No Yes	Metallosphaera sedula DSM 5348		65	63
No Yes	Sulfolobus tokodaii 7		85	81
No Yes	Sulfolobus islandicus Y.N.15.51		74	71
No Yes	Sulfolobus solfataricus P2		66	64
No Yes	Sulfolobus acidocaldarius DSM 639		74	71
No Yes	Thermofilum pendens Hrk 5		49	49
No Yes	Caldivirga maquilingensis IC-167		53	51
No Yes	Pyrobaculum calidifontis JCM 11548		36	36
No Yes	Pyrobaculum arsenaticum DSM 13514		51	51
No Yes	Pyrobaculum aerophilum IM2		53	53
No Yes	Pyrobaculum islandicum DSM 4184		44	44
No Yes	Thermoproteus neutrophilus V24Sta		43	43
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	154	151
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	123	118
No Yes	Cryptococcus neoformans var. grubii H99		46	42
No Yes	Cryptococcus neoformans B-3501A		47	43
No Yes	Ajellomyces dermatitidis ER-3		43	41
No Yes	Histoplasma capsulatum H143		40	37
No Yes	Histoplasma capsulatum H88		44	41
No Yes	Histoplasma capsulatum G186AR		44	41
No Yes	Paracoccidioides brasiliensis Pb01		41	38
No Yes	Paracoccidioides brasiliensis Pb03		37	36
No Yes	Coccidioides posadasii str. Silveira		47	44
No Yes	Coccidioides immitis RMSCC 3703		40	37
No Yes	Coccidioides immitis RMSCC 2394		50	47
No Yes	Coccidioides immitis H538.4		38	36
No Yes	Aspergillus fumigatus A1163		57	55
No Yes	Candida albicans WO-1		34	32
No Yes	Saccharomyces cerevisiae YJM789		38	35
No Yes	Saccharomyces cerevisiae RM11-1a		37	34
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	38	35
No Yes	Schizosaccharomyces pombe 972h-		42	40
No Yes	Batrachochytrium dendrobatidis JAM81		47	45
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	240	234
No Yes	Plasmodium falciparum HB3		14	14
No Yes	Plasmodium falciparum Dd2		9	9
No Yes	Candidatus Phytoplasma australiense		1	1
No Yes	Ureaplasma parvum ser. 3 ATCC 27815		6	5
No Yes	Mycoplasma agalactiae		4	3
No Yes	Mycoplasma hyopneumoniae 7448		4	3
No Yes	Mycoplasma hyopneumoniae J		4	3
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis JB197		24	23
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		27	26
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Ames)		37	36
No Yes	Treponema pallidum ssp. pallidum SS14		5	5
No Yes	Borrelia burgdorferi ZS7		4	4
No Yes	Bifidobacterium longum ssp. infantis ATCC 15697		33	32
No Yes	Bifidobacterium longum		39	38
No Yes	Bifidobacterium animalis ssp. lactis Bl-04		27	27
No Yes	Bifidobacterium animalis ssp. lactis DSM 10140		27	27
No Yes	Frankia sp. EAN1pec		156	154
No Yes	Propionibacterium acnes SK137		38	38
No Yes	Mycobacterium sp. KMS		131	129
No Yes	Mycobacterium sp. JLS		147	145
No Yes	Mycobacterium avium 104		79	77
No Yes	Mycobacterium tuberculosis KZN 1435		62	60
No Yes	Mycobacterium tuberculosis H37Ra		63	61
No Yes	Mycobacterium tuberculosis F11		63	61
No Yes	Mycobacterium tuberculosis CDC1551		59	57
No Yes	Mycobacterium bovis BCG Tokyo 172		63	61
No Yes	Mycobacterium bovis BCG Pasteur 1173P2		63	61
No Yes	Mycobacterium leprae Br4923		20	19
No Yes	Corynebacterium glutamicum R		89	87
No Yes	Corynebacterium glutamicum ATCC 13032 Bielefeld		80	78
No Yes	Tropheryma whipplei TW08/27		4	4
No Yes	Clavibacter michiganensis ssp. sepedonicus		67	66
No Yes	Dehalococcoides sp. GT		28	28
No Yes	Dehalococcoides sp. VS		29	29
No Yes	Dehalococcoides sp. BAV1		20	20
No Yes	Chlorobium phaeobacteroides BS1		28	27
No Yes	Porphyromonas gingivalis ATCC 33277		19	19
No Yes	Bacteroides fragilis YCH46		34	34
No Yes	Salinibacter ruber		26	25
No Yes	Blattabacterium sp. BPLAN		2	2
No Yes	Chlamydophila pneumoniae J138		4	4
No Yes	Chlamydophila pneumoniae CWL029		4	4
No Yes	Chlamydophila pneumoniae AR39		4	4
No Yes	Chlamydia trachomatis B/TZ1A828/OT		3	3
No Yes	Chlamydia trachomatis B/Jali20/OT		3	3
No Yes	Chlamydia trachomatis L2b/UCH-1/proctitis		3	3
No Yes	Chlamydia trachomatis 434/Bu		3	3
No Yes	Chlamydia trachomatis A/HAR-13		3	3
No Yes	Thermus thermophilus HB8		30	28
No Yes	Desulfitobacterium hafniense DCB-2		164	162
No Yes	Clostridium kluyveri NBRC 12016		100	99
No Yes	Clostridium perfringens SM101		70	66
No Yes	Clostridium perfringens ATCC 13124		71	68
No Yes	Clostridium difficile R20291		125	121
No Yes	Clostridium difficile CD196		123	119
No Yes	Clostridium botulinum F Langeland		94	92
No Yes	Clostridium botulinum E3 Alaska E43		86	85
No Yes	Clostridium botulinum B1 Okra		99	97
No Yes	Clostridium botulinum Ba4 657		98	95
No Yes	Clostridium botulinum B Eklund 17B		83	82
No Yes	Clostridium botulinum A2 Kyoto		93	91
No Yes	Clostridium botulinum A3 Loch Maree		100	98
No Yes	Clostridium botulinum A Hall		92	90
No Yes	Clostridium botulinum A ATCC 19397		93	91
No Yes	Lactobacillus casei BL23		84	83
No Yes	Lactobacillus rhamnosus Lc 705		74	73
No Yes	Lactobacillus johnsonii FI9785		37	36
No Yes	Lactobacillus reuteri JCM 1112		45	44
No Yes	Lactobacillus plantarum JDM1		116	115
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365		36	35
No Yes	Lactococcus lactis ssp. lactis KF147		57	56
No Yes	Lactococcus lactis ssp. cremoris MG1363		58	57
No Yes	Lactococcus lactis ssp. cremoris SK11		53	52
No Yes	Streptococcus equi ssp. equi 4047		45	42
No Yes	Streptococcus equi ssp. zooepidemicus		42	39
No Yes	Streptococcus pyogenes MGAS10750		45	44
No Yes	Streptococcus pyogenes MGAS10270		46	45
No Yes	Streptococcus pyogenes MGAS2096		45	44
No Yes	Streptococcus pyogenes MGAS9429		44	43
No Yes	Streptococcus pyogenes MGAS6180		45	44
No Yes	Streptococcus pyogenes NZ131		42	41
No Yes	Streptococcus pyogenes MGAS8232		43	42
No Yes	Streptococcus pyogenes MGAS10394		45	44
No Yes	Streptococcus pyogenes Manfredo		44	43
No Yes	Streptococcus pyogenes MGAS315		43	42
No Yes	Streptococcus pyogenes SSI-1		43	42
No Yes	Streptococcus pyogenes MGAS5005		45	44
No Yes	Streptococcus pneumoniae ATCC 700669		39	38
No Yes	Streptococcus pneumoniae CGSP14		41	39
No Yes	Streptococcus pneumoniae G54		40	39
No Yes	Streptococcus pneumoniae P1031		38	37
No Yes	Streptococcus pneumoniae JJA		39	38
No Yes	Streptococcus pneumoniae 70585		43	41
No Yes	Streptococcus pneumoniae Hungary19A-6		39	38
No Yes	Streptococcus pneumoniae Taiwan19F-14		41	39
No Yes	Streptococcus pneumoniae D39		39	37
No Yes	Streptococcus pneumoniae R6 (Non-virulent)		41	39
No Yes	Streptococcus agalactiae A909		41	40
No Yes	Streptococcus agalactiae 2603V/R		40	39
No Yes	Streptococcus mutans NN2025		54	53
No Yes	Streptococcus thermophilus LMD-9		25	24
No Yes	Streptococcus thermophilus CNRZ1066 (Younger strain)		28	27
No Yes	Streptococcus suis BM407		50	49
No Yes	Streptococcus suis SC84		50	49
No Yes	Streptococcus suis 98HAH33		48	47
No Yes	Streptococcus suis P1/7		50	49
No Yes	Listeria monocytogenes 08-5578		105	103
No Yes	Listeria monocytogenes 08-5923		105	103
No Yes	Listeria monocytogenes Clip80459		106	103
No Yes	Listeria monocytogenes HCC23		99	96
No Yes	Listeria monocytogenes 4b F2365		103	100
No Yes	Geobacillus sp. Y412MC61		70	68
No Yes	Geobacillus sp. Y412MC10		221	220
No Yes	Bacillus licheniformis ATCC 14580		134	132
No Yes	Bacillus cytotoxicus NVH 391-98		89	88
No Yes	Bacillus thuringiensis Al Hakam		138	136
No Yes	Bacillus cereus 03BB102		152	151
No Yes	Bacillus cereus AH820		146	145
No Yes	Bacillus cereus AH187		149	148
No Yes	Bacillus cereus B4264		146	145
No Yes	Bacillus cereus G9842		144	143
No Yes	Bacillus cereus Q1		146	145
No Yes	Bacillus cereus E33L		160	159
No Yes	Bacillus cereus ATCC 10987		151	150
No Yes	Bacillus anthracis A0248		143	142
No Yes	Bacillus anthracis CDC 684		148	147
No Yes	Bacillus anthracis Sterne		149	148
No Yes	Bacillus anthracis Ames		146	145
No Yes	Bacillus megaterium DSM319		161	160
No Yes	Staphylococcus epidermidis ATCC 12228		56	54
No Yes	Staphylococcus aureus RF122		63	60
No Yes	Staphylococcus aureus ssp. aureus ED98		67	62
No Yes	Staphylococcus aureus ssp. aureus Newman		70	65
No Yes	Staphylococcus aureus ssp. aureus Mu3		69	64
No Yes	Staphylococcus aureus ssp. aureus USA300_TCH1516		63	59
No Yes	Staphylococcus aureus ssp. aureus USA300_FPR3757		72	67
No Yes	Staphylococcus aureus ssp. aureus JH1		69	64
No Yes	Staphylococcus aureus ssp. aureus JH9		69	64
No Yes	Staphylococcus aureus ssp. aureus MSSA476		68	63
No Yes	Staphylococcus aureus ssp. aureus MRSA252		71	66
No Yes	Staphylococcus aureus ssp. aureus MW2		67	62
No Yes	Staphylococcus aureus ssp. aureus N315		69	64
No Yes	Staphylococcus aureus ssp. aureus Mu50		69	64
No Yes	Staphylococcus aureus ssp. aureus COL		70	65
No Yes	Campylobacter jejuni RM1221		13	13
No Yes	Campylobacter jejuni ssp. jejuni 81116		12	12
No Yes	Campylobacter jejuni ssp. jejuni 81-176		13	13
No Yes	Campylobacter jejuni ssp. doylei 269.97		10	10
No Yes	Helicobacter pylori B38		4	4
No Yes	Helicobacter pylori P12		4	4
No Yes	Helicobacter pylori G27		4	4
No Yes	Helicobacter pylori Shi470		4	4
No Yes	Helicobacter pylori HPAG1		4	4
No Yes	Helicobacter pylori J99		4	4
No Yes	Desulfovibrio vulgaris DP4		46	44
No Yes	Desulfovibrio vulgaris Miyazaki F		50	48
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans ATCC 27774		27	25
No Yes	Geobacter sp. M21		52	49
No Yes	Anaeromyxobacter sp. K		64	61
No Yes	Anaeromyxobacter dehalogenans 2CP-1		62	59
No Yes	Azoarcus sp. BH72		87	86
No Yes	Neisseria meningitidis alpha14		26	25
No Yes	Neisseria meningitidis 053442		24	23
No Yes	Neisseria meningitidis FAM18		27	26
No Yes	Neisseria meningitidis MC58		28	26
No Yes	Neisseria gonorrhoeae NCCP11945		28	27
No Yes	Ralstonia eutropha H16		357	353
No Yes	Ralstonia pickettii 12D		183	182
No Yes	Polynucleobacter necessarius ssp. necessarius STIR1		18	17
No Yes	Burkholderia sp. CCGE1002		289	285
No Yes	Burkholderia pseudomallei MSHR346		112	111
No Yes	Burkholderia pseudomallei 1106a		210	207
No Yes	Burkholderia pseudomallei 668		211	208
No Yes	Burkholderia pseudomallei 1710b		213	210
No Yes	Burkholderia mallei NCTC 10229		180	177
No Yes	Burkholderia mallei NCTC 10247		183	180
No Yes	Burkholderia mallei SAVP1		161	158
No Yes	Burkholderia ambifaria MC40-6		344	340
No Yes	Burkholderia cenocepacia MC0-3		402	398
No Yes	Burkholderia cenocepacia HI2424		391	387
No Yes	Burkholderia cenocepacia J2315		390	386
No Yes	Burkholderia multivorans ATCC 17616		313	308
No Yes	Caulobacter crescentus NA1000		87	85
No Yes	Zymomonas mobilis ssp. mobilis NCIMB 11163		33	33
No Yes	Rhodobacter sphaeroides KD131		109	107
No Yes	Rhodobacter sphaeroides ATCC 17025		61	59
No Yes	Rhodobacter sphaeroides ATCC 17029		101	99
No Yes	Gluconacetobacter diazotrophicus PAl 5		94	93
No Yes	Ehrlichia ruminantium Gardel		4	4
No Yes	Ehrlichia ruminantium Welgevonden		4	4
No Yes	Anaplasma marginale Florida		3	3
No Yes	Orientia tsutsugamushi Ikeda		4	4
No Yes	Rickettsia bellii OSU 85-389		5	5
No Yes	Rickettsia rickettsii Iowa		4	4
No Yes	Methylobacterium extorquens DM4		126	126
No Yes	Methylobacterium extorquens AM1		94	94
No Yes	Brucella suis ATCC 23445		95	94
No Yes	Brucella melitensis ATCC 23457		97	96
No Yes	Brucella abortus S19		99	98
No Yes	Brucella melitensis biov. Abortus 2308		98	97
No Yes	Rhizobium etli CIAT 652		155	153
No Yes	Rhizobium leguminosarum bv. trifolii WSM2304		170	166
No Yes	Rhizobium leguminosarum bv. trifolii WSM1325		188	184
No Yes	Rhodopseudomonas palustris TIE-1		120	119
No Yes	Rhodopseudomonas palustris HaA2		108	107
No Yes	Rhodopseudomonas palustris BisB5		90	89
No Yes	Rhodopseudomonas palustris BisB18		105	104
No Yes	Rhodopseudomonas palustris BisA53		78	77
No Yes	Bradyrhizobium sp. BTAi1		207	206
No Yes	Acidithiobacillus ferrooxidans ATCC 53993		50	49
No Yes	Haemophilus somnus 2336		30	30
No Yes	Haemophilus influenzae PittGG		27	26
No Yes	Haemophilus influenzae PittEE		28	27
No Yes	Haemophilus influenzae 86-028NP		28	27
No Yes	Actinobacillus pleuropneumoniae ser. 3 JL03		35	34
No Yes	Actinobacillus pleuropneumoniae ser. 7 AP76		39	38
No Yes	Vibrio fischeri MJ11		104	104
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		118	118
No Yes	Vibrio cholerae M66-2		80	80
No Yes	Vibrio cholerae O395		79	79
No Yes	Vibrio cholerae MJ-1236		82	82
No Yes	Shewanella sp. W3-18-1		90	89
No Yes	Shewanella sp. ANA-3		100	98
No Yes	Shewanella baltica OS223		97	95
No Yes	Shewanella baltica OS185		100	98
No Yes	Shewanella baltica OS195		105	103
No Yes	Shewanella sp. MR-4		87	85
No Yes	Stenotrophomonas maltophilia K279a		113	110
No Yes	Xylella fastidiosa M23		20	19
No Yes	Xylella fastidiosa M12		20	19
No Yes	Xylella fastidiosa Temecula1		20	19
No Yes	Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)		92	90
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		58	56
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		55	53
No Yes	Xanthomonas campestris pv. campestris B100		83	81
No Yes	Xanthomonas campestris pv. campestris 8004 (Completed 2005)		86	84
No Yes	Thioalkalivibrio sp. K90mix		33	32
No Yes	Coxiella burnetii CbuK_Q154		15	14
No Yes	Coxiella burnetii CbuG_Q212		13	12
No Yes	Coxiella burnetii Dugway 5J108-111		16	15
No Yes	Coxiella burnetii RSA 331		12	11
No Yes	Legionella pneumophila Corby		33	32
No Yes	Legionella pneumophila Paris		34	33
No Yes	Legionella pneumophila Lens		33	32
No Yes	Dickeya dadantii Ech586		144	144
No Yes	Candidatus Blochmannia pennsylvanicus BPEN		5	5
No Yes	Buchnera aphidicola Sg		1	1
No Yes	Yersinia pseudotuberculosis PB1/+		82	80
No Yes	Yersinia pseudotuberculosis YPIII		83	81
No Yes	Yersinia pseudotuberculosis IP 31758		84	82
No Yes	Yersinia pestis Z176003		79	77
No Yes	Yersinia pestis Pestoides F		83	81
No Yes	Yersinia pestis Nepal516		80	78
No Yes	Yersinia pestis Antiqua		84	82
No Yes	Yersinia pestis Angola		72	71
No Yes	Yersinia pestis biov. Microtus 91001		79	78
No Yes	Yersinia pestis KIM		81	79
No Yes	Shigella flexneri 5 8401		98	97
No Yes	Shigella flexneri 2a 301		94	93
No Yes	Shigella boydii CDC 3083-94		89	88
No Yes	Salmonella enterica ssp. arizonae ser. 62:z4,z23:--		99	98
No Yes	Salmonella enterica ssp. enterica ser. Schwarzengrund CVM19633		122	120
No Yes	Salmonella enterica ssp. enterica ser. Enteritidis P125109		133	131
No Yes	Salmonella enterica ssp. enterica ser. Choleraesuis str. SC-B67		119	117
No Yes	Salmonella enterica ssp. enterica ser. Newport SL254		130	128
No Yes	Salmonella enterica ssp. enterica ser. Dublin CT_02021853		128	126
No Yes	Salmonella enterica ssp. enterica ser. Typhi CT18		121	119
No Yes	Salmonella enterica ssp. enterica ser. Typhi Ty2		123	121
No Yes	Salmonella enterica ssp. enterica ser. Agona SL483		128	126
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi C RKS4594		119	117
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi B SPB7		132	130
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A AKU_12601		121	119
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A ATCC 9150		121	119
No Yes	Salmonella enterica ssp. enterica ser. Heidelberg SL476		128	127
No Yes	Salmonella enterica ssp. enterica ser. Gallinarum 287/91		128	126
No Yes	Klebsiella pneumoniae 342		219	217
No Yes	Klebsiella pneumoniae NTUH-K2044		196	194
No Yes	Escherichia coli ED1a		106	105
No Yes	Escherichia coli IAI39		123	122
No Yes	Escherichia coli UMN026		122	121
No Yes	Escherichia coli 55989		114	113
No Yes	Escherichia coli S88		119	118
No Yes	Escherichia coli IAI1		115	114
No Yes	Escherichia coli BL21		104	103
No Yes	Escherichia coli ATCC 8739		115	114
No Yes	Escherichia coli BL21(DE3)		106	105
No Yes	Escherichia coli SMS-3-5		128	127
No Yes	Escherichia coli SE11		115	114
No Yes	Escherichia coli APEC O1		114	113
No Yes	Escherichia coli O103:H2 12009		117	116
No Yes	Escherichia coli UTI89		118	117
No Yes	Escherichia coli 536		115	114
No Yes	Escherichia coli HS		112	111
No Yes	Escherichia coli E24377A		112	111
No Yes	Escherichia coli O55:H7 CB9615		115	114
No Yes	Escherichia coli O26:H11 11368		117	116
No Yes	Escherichia coli CFT073		119	118
No Yes	Escherichia coli O111:H- 11128		114	113
No Yes	Escherichia coli O127:H6 E2348/69		107	106
No Yes	Escherichia coli O157:H7 EDL933		110	109
No Yes	Escherichia coli O157:H7 TW14359		111	110
No Yes	Escherichia coli O157:H7 EC4115		111	110
No Yes	Escherichia coli O157:H7 Sakai		111	110
No Yes	Escherichia coli BW2952		110	109
No Yes	Escherichia coli K-12 subW3110		114	113
No Yes	Escherichia coli K-12 subDH10B		108	107
No Yes	Escherichia coli B REL606		110	109
No Yes	Erwinia amylovora CFBP1430		70	69
No Yes	Pseudomonas syringae pv. phaseolicola 1448A		146	144
No Yes	Pseudomonas syringae pv. syringae B728a		159	157
No Yes	Pseudomonas putida W619		202	198
No Yes	Pseudomonas putida F1		212	208
No Yes	Pseudomonas putida GB-1		220	217
No Yes	Pseudomonas fluorescens SBW25		236	233
No Yes	Pseudomonas fluorescens Pf0-1		214	211
No Yes	Pseudomonas aeruginosa LESB58		217	214
No Yes	Pseudomonas aeruginosa PA7		201	198
No Yes	Pseudomonas aeruginosa UCBPP-PA14		216	213
No Yes	Acinetobacter baumannii AB307-0294		133	132
No Yes	Acinetobacter baumannii AYE		131	130
No Yes	Acinetobacter baumannii SDF		68	67
No Yes	Acinetobacter baumannii AB0057		133	132
No Yes	Acinetobacter baumannii ACICU		127	126
No Yes	Francisella novicida U112		23	23
No Yes	Francisella tularensis ssp. mediasiatica FSC147		16	16
No Yes	Francisella tularensis ssp. holarctica FTNF002-00		17	17
No Yes	Francisella tularensis ssp. holarctica OSU18		18	18
No Yes	Francisella tularensis ssp. holarctica		19	19
No Yes	Francisella tularensis ssp. tularensis WY96-3418		24	24
No Yes	Francisella tularensis ssp. tularensis FSC198		20	20
No Yes	Prochlorococcus marinus NATL1A		12	11
No Yes	Prochlorococcus marinus MIT 9301		10	10
No Yes	Prochlorococcus marinus MIT 9515		11	10
No Yes	Prochlorococcus marinus AS9601		9	9
No Yes	Prochlorococcus marinus ssp. marinus CCMP1375		12	11
No Yes	Prochlorococcus marinus ssp. pastoris CCMP1986		14	13
No Yes	Prochlorococcus marinus MIT 9215		9	9
No Yes	Prochlorococcus marinus MIT 9211		10	9
No Yes	Prochlorococcus marinus MIT 9312		11	10
No Yes	Prochlorococcus marinus MIT 9303		18	17
No Yes	Prochlorococcus marinus NATL2A		12	11
No Yes	Cyanothece sp. PCC 8802		33	32
No Yes	Cyanothece sp. PCC 7425		49	48
No Yes	Cyanothece sp. PCC 7424		34	33
No Yes	Cyanothece sp. PCC 8801		33	32
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		26	25
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		25	24
No Yes	Synechococcus sp. CC9902 (Poor annotation)		15	14
No Yes	Synechococcus sp. RCC307		16	15
No Yes	Synechococcus sp. CC9605 (Poor annotation)		18	17
No Yes	Synechococcus sp. WH 8102 (Good annotation)		16	15
No Yes	Synechococcus sp. CC9311		17	16
No Yes	Synechococcus sp. WH 7803		15	14
No Yes	Synechococcus sp. PCC 7002		26	25
No Yes	Synechococcus elongatus PCC 7942		30	29
No Yes	Methanococcus maripaludis C6		37	37
No Yes	Methanococcus maripaludis C7		34	34
No Yes	Methanococcus maripaludis C5		45	45
No Yes	Sulfolobus islandicus Y.G.57.14		74	72
No Yes	Sulfolobus islandicus L.S.2.15		79	78
No Yes	Sulfolobus islandicus M.16.27		74	73
No Yes	Sulfolobus islandicus M.14.25		72	70
No Yes	Sulfolobus islandicus M.16.4		75	73
No Yes	Sulfolobus islandicus L.D.8.5		80	78
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	200	187
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		27	26
No Yes	Lotus japonicus (Early assembly)		20	20
No Yes	Prunus persica (Early draft)	Peach	267	264
No Yes	Manihot esculenta (Early draft)	Cassava	216	209
No Yes	Ricinus communis (Early assembly)	Castor bean	223	217
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	139	134
No Yes	Phoenix dactylifera (Early draft)	Date palm	67	63
No Yes	Trypanosoma vivax (Parial)		25	23
No Yes	Trypanosoma congolense (Partial)		35	35
No Yes	Toxoplasma gondii GT1 (Early assembly)		19	19
No Yes	Toxoplasma gondii VEG (Early assembly)		19	19
No Yes	Toxoplasma gondii RH (Archived)		22	21
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	212	200
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	190	179
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	146	138
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	188	178
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	201	189
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	200	189
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	138	129
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	150	142
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	121	113
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	178	168
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	201	189
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	131	121
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	150	140
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	185	173
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	122	117
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	152	142
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	127	119
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	154	144
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	240	224
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	119	114
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	174	163
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	195	183
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	132	125
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	178	168
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	149	139
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	184	172
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	103	97
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	134	125
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	152	143
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	122	116
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	155	145
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	124	116
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	157	148
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	184	173
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	142	134
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	184	173
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	166	155
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	156	146
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	161	150
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	206	195
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	222	210
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	223	211
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	211	200
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	243	230
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	243	230
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		101	97
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		112	109
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	75	73
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	154	151
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	107	104
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	96	92
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	80	77
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	96	91
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	97	92
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	197	187
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	212	208
No Yes	NCBI viral sequences (Viral)		110	109
No Yes	PDB chains (SCOP 1.73) (PDB)		250	237
No Yes	TargetDB (Targets)		4330	4250
No Yes	UniProt 15.0 (UniProt)		113134	110633
No Yes	UniProt 15.0 viral sequences (Viral)		192	191