Histone-fold superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		31910	31910
No Yes	Homo sapiens 49_36k (all transcripts)	Human	167	166
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	118	117
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	71	71
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	93	93
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	139	138
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	128	126
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	82	82
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	85	84
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	74	74
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	107	105
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	162	160
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	56	56
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	82	81
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	81	80
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	74	73
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	89	88
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	51	50
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	98	96
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	152	149
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	59	59
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	93	92
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	139	137
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	59	59
No Yes	Equus caballus 49_2 (all transcripts)	Horse	97	96
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	87	87
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	77	76
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	95	95
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	73	71
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	71	71
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	73	72
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	74	73
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	72	71
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	53	53
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	80	77
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	154	152
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	61	61
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	75	74
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	38	38
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	108	107
No Yes	Xenopus laevis	African clawed frog	390	388
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	223	222
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	164	162
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	168	167
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	77	77
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	88	85
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	193	188
No Yes	Branchiostoma floridae 1.0	Florida lancelet	214	205
No Yes	Ciona savignyi 49_2f (all transcripts)		44	39
No Yes	Ciona intestinalis 49_2i (all transcripts)		22	22
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	237	235
No Yes	Helobdella robusta		60	60
No Yes	Capitella sp. I		123	110
No Yes	Bombyx mori	Domestic silkworm	19	19
No Yes	Nasonia vitripennis	Jewel wasp	91	91
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	49	49
No Yes	Drosophila grimshawi 1.3		168	168
No Yes	Drosophila willistoni 1.3		58	58
No Yes	Drosophila pseudoobscura 2.3		30	30
No Yes	Drosophila persimilis 1.3		60	60
No Yes	Drosophila yakuba 1.3		32	32
No Yes	Drosophila simulans 1.3		86	86
No Yes	Drosophila sechellia 1.3		334	333
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	125	125
No Yes	Drosophila erecta 1.3		166	166
No Yes	Drosophila ananassae 1.3		108	107
No Yes	Drosophila virilis 1.2		108	108
No Yes	Drosophila mojavensis 1.3		73	73
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	87	87
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	123	123
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	56	56
No Yes	Tribolium castaneum 3.0	Red flour beetle	35	35
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	42	42
No Yes	Acyrthosiphon pisum	Pea aphid	35	35
No Yes	Daphnia pulex	Common water flea	128	128
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	25	25
No Yes	Lottia gigantea		120	118
No Yes	Pristionchus pacificus		31	30
No Yes	Meloidogyne incognita	Southern root-knot nematode	57	57
No Yes	Meloidogyne hapla		27	27
No Yes	Brugia malayi	Agent of lymphatic filariasis	19	19
No Yes	Caenorhabditis japonica		41	41
No Yes	Caenorhabditis brenneri		92	92
No Yes	Caenorhabditis remanei		85	85
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	98	98
No Yes	Caenorhabditis briggsae 2		66	66
No Yes	Schistosoma mansoni		44	44
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	190	180
No Yes	Hydra magnipapillata		142	140
No Yes	Trichoplax adhaerens		24	24
No Yes	Proterospongia sp. ATCC 50818		24	24
No Yes	Monosiga brevicollis		18	18
No Yes	Capsaspora owczarzaki ATCC 30864		31	31
No Yes	Malassezia globosa CBS 7966		16	16
No Yes	Ustilago maydis		21	21
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		36	36
No Yes	Melampsora laricis-populina		34	34
No Yes	Sporobolomyces roseus IAM 13481		30	30
No Yes	Serpula lacrymans var. lacrymans S7.9		30	30
No Yes	Coprinopsis cinerea okayama7 130		29	29
No Yes	Pleurotus ostreatus	Oyster mushroom	32	32
No Yes	Laccaria bicolor S238N-H82		55	55
No Yes	Agaricus bisporus var. bisporus		31	31
No Yes	Schizophyllum commune		34	34
No Yes	Heterobasidion annosum		27	27
No Yes	Phanerochaete chrysosporium RP-78 2.1		27	27
No Yes	Postia placenta		39	39
No Yes	Tremella mesenterica		22	22
No Yes	Cryptococcus neoformans JEC21		17	17
No Yes	Magnaporthe grisea 70-15		24	24
No Yes	Podospora anserina		22	21
No Yes	Sporotrichum thermophile ATCC 42464		25	24
No Yes	Thielavia terrestris NRRL 8126		24	23
No Yes	Chaetomium globosum CBS 148.51		23	22
No Yes	Neurospora tetrasperma		23	22
No Yes	Neurospora discreta FGSC 8579		23	22
No Yes	Neurospora crassa OR74A		23	22
No Yes	Cryphonectria parasitica	Chestnut blight fungus	24	23
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		24	23
No Yes	Nectria haematococca mpVI		23	22
No Yes	Fusarium verticillioides 7600		23	22
No Yes	Fusarium graminearum		23	22
No Yes	Trichoderma atroviride		24	23
No Yes	Trichoderma reesei 1.2		24	22
No Yes	Trichoderma virens Gv29-8		25	24
No Yes	Verticillium dahliae VdLs.17		23	22
No Yes	Verticillium albo-atrum VaMs.102		18	18
No Yes	Botrytis cinerea B05.10		21	21
No Yes	Sclerotinia sclerotiorum		21	20
No Yes	Alternaria brassicicola		17	16
No Yes	Pyrenophora tritici-repentis		49	48
No Yes	Cochliobolus heterostrophus		22	21
No Yes	Stagonospora nodorum		21	21
No Yes	Mycosphaerella fijiensis CIRAD86		35	35
No Yes	Mycosphaerella graminicola IPO323		19	19
No Yes	Ajellomyces dermatitidis SLH14081		29	29
No Yes	Histoplasma capsulatum class NAmI strain WU24		19	18
No Yes	Microsporum gypseum		20	20
No Yes	Arthroderma benhamiae CBS 112371		19	19
No Yes	Microsporum canis CBS 113480		23	22
No Yes	Trichophyton equinum CBS 127.97		23	22
No Yes	Trichophyton verrucosum HKI 0517		19	19
No Yes	Trichophyton tonsurans CBS 112818		21	20
No Yes	Trichophyton rubrum CBS 118892		23	22
No Yes	Paracoccidioides brasiliensis Pb18		23	22
No Yes	Coccidioides posadasii RMSCC 3488		22	21
No Yes	Coccidioides immitis RS		22	21
No Yes	Uncinocarpus reesii 1704		19	18
No Yes	Aspergillus fumigatus Af293		22	21
No Yes	Neosartorya fischeri NRRL 181		23	22
No Yes	Penicillium chrysogenum Wisconsin 54-1255		22	21
No Yes	Penicillium marneffei ATCC 18224		27	26
No Yes	Aspergillus carbonarius ITEM 5010		23	22
No Yes	Aspergillus terreus NIH2624		22	21
No Yes	Aspergillus oryzae RIB40		22	21
No Yes	Aspergillus niger ATCC 1015		13	13
No Yes	Aspergillus flavus NRRL3357		23	22
No Yes	Aspergillus clavatus NRRL 1		23	22
No Yes	Aspergillus nidulans FGSC A4		23	22
No Yes	Tuber melanosporum Vittad	Perigord truffle	26	24
No Yes	Candida dubliniensis CD36		28	27
No Yes	Candida tropicalis MYA-3404		28	27
No Yes	Candida parapsilosis		23	23
No Yes	Candida albicans SC5314		25	24
No Yes	Yarrowia lipolytica CLIB122		25	24
No Yes	Candida lusitaniae ATCC 42720		23	22
No Yes	Vanderwaltozyma polyspora DSM 70294		23	23
No Yes	Candida glabrata CBS138		27	27
No Yes	Kluyveromyces thermotolerans CBS 6340		23	23
No Yes	Lachancea kluyveri		23	23
No Yes	Kluyveromyces waltii		23	23
No Yes	Lodderomyces elongisporus NRRL YB-4239		23	23
No Yes	Ashbya gossypii ATCC 10895		23	22
No Yes	Debaromyces hansenii		26	25
No Yes	Zygosaccharomyces rouxii		22	22
No Yes	Saccharomyces mikatae MIT		24	24
No Yes	Saccharomyces paradoxus MIT		23	23
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	24	24
No Yes	Saccharomyces bayanus MIT		23	23
No Yes	Candida guilliermondii ATCC 6260		23	22
No Yes	Pichia stipitis CBS 6054		26	25
No Yes	Pichia pastoris GS115		20	20
No Yes	Kluyveromyces lactis		24	23
No Yes	Schizosaccharomyces octosporus yFS286		26	26
No Yes	Schizosaccharomyces japonicus yFS275		26	26
No Yes	Schizosaccharomyces pombe	Fission yeast	25	25
No Yes	Allomyces macrogynus ATCC 38327		39	38
No Yes	Rhizopus oryzae RA 99-880		31	31
No Yes	Phycomyces blakesleeanus		37	36
No Yes	Mucor circinelloides		27	27
No Yes	Encephalitozoon intestinalis		15	15
No Yes	Encephalitozoon cuniculi		15	15
No Yes	Spizellomyces punctatus DAOM BR117		29	29
No Yes	Batrachochytrium dendrobatidis JEL423		20	19
No Yes	Dictyostelium discoideum		29	29
No Yes	Dictyostelium purpureum		29	28
No Yes	Entamoeba dispar		25	25
No Yes	Entamoeba invadens		26	26
No Yes	Entamoeba histolytica 1		26	26
No Yes	Arabidopsis lyrata	Lyrate rockcress	107	103
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	113	113
No Yes	Carica papaya	Papaya	47	47
No Yes	Medicago truncatula	Barrel medic	106	106
No Yes	Glycine max	Soybean	151	151
No Yes	Cucumis sativus	Cucumber	92	92
No Yes	Populus trichocarpa 1.1	Black cottonwood	106	106
No Yes	Vitis vinifera	Wine grape	72	72
No Yes	Brachypodium distachyon		118	117
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	109	109
No Yes	Zea mays subsp. mays	Maize	219	219
No Yes	Sorghum bicolor	Sorghum	96	96
No Yes	Selaginella moellendorffii		74	74
No Yes	Physcomitrella patens subsp. patens		76	76
No Yes	Coccomyxa sp. C-169		45	45
No Yes	Chlorella sp. NC64A		43	43
No Yes	Chlorella vulgaris		44	43
No Yes	Volvox carteri f. nagariensis		63	61
No Yes	Chlamydomonas reinhardtii 4.0		135	135
No Yes	Ostreococcus sp. RCC809		23	23
No Yes	Ostreococcus lucimarinus CCE9901		22	22
No Yes	Ostreococcus tauri		24	24
No Yes	Micromonas sp. RCC299		27	27
No Yes	Micromonas pusilla CCMP1545		29	29
No Yes	Cyanidioschyzon merolae		21	21
No Yes	Giardia lamblia		14	14
No Yes	Trypanosoma cruzi strain CL Brener		55	55
No Yes	Trypanosoma brucei		50	50
No Yes	Leishmania mexicana		27	27
No Yes	Leishmania major strain Friedlin		29	29
No Yes	Leishmania infantum JPCM5		24	24
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		33	33
No Yes	Aureococcus anophagefferens		55	55
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	30	30
No Yes	Phytophthora sojae 1.1		21	21
No Yes	Phytophthora infestans T30-4		27	27
No Yes	Phytophthora capsici		30	30
No Yes	Phaeodactylum tricornutum		21	21
No Yes	Fragilariopsis cylindrus		47	47
No Yes	Thalassiosira pseudonana		32	32
No Yes	Paramecium tetraurelia		59	59
No Yes	Tetrahymena thermophila SB210 1		20	20
No Yes	Babesia bovis T2Bo		11	11
No Yes	Theileria parva		12	12
No Yes	Theileria annulata		12	12
No Yes	Plasmodium falciparum 3D7		11	11
No Yes	Plasmodium vivax SaI-1		11	11
No Yes	Plasmodium knowlesi strain H		12	12
No Yes	Plasmodium yoelii ssp. yoelii 1		9	9
No Yes	Plasmodium chabaudi		11	11
No Yes	Plasmodium berghei ANKA		11	11
No Yes	Cryptosporidium hominis		12	12
No Yes	Cryptosporidium muris		13	13
No Yes	Cryptosporidium parvum Iowa II		12	12
No Yes	Neospora caninum Nc-Liverpool		10	10
No Yes	Neospora caninum		9	9
No Yes	Toxoplasma gondii ME49		12	12
No Yes	Naegleria gruberi		32	32
No Yes	Trichomonas vaginalis		92	92
No Yes	Guillardia theta		5	5
No Yes	Emiliania huxleyi CCMP1516		74	72
No Yes	Nakamurella multipartita DSM 44233		1	1
No Yes	Frankia alni ACN14a		1	1
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		1	1
No Yes	Streptomyces avermitilis MA-4680		1	1
No Yes	Streptomyces scabiei 87.22		1	1
No Yes	Gordonia bronchialis DSM 43247		1	1
No Yes	Rhodococcus jostii RHA1		2	2
No Yes	Rhodococcus opacus B4		1	1
No Yes	Micrococcus luteus NCTC 2665		1	1
No Yes	Rubrobacter xylanophilus DSM 9941		1	1
No Yes	Persephonella marina EX-H1		1	1
No Yes	Aquifex aeolicus VF5		2	2
No Yes	Rhodothermus marinus DSM 4252		1	1
No Yes	Thermus thermophilus HB27 (First sequenced)		1	1
No Yes	Nautilia profundicola AmH		1	1
No Yes	Nitratiruptor sp. SB155-2		1	1
No Yes	Nostoc punctiforme PCC 73102		1	1
No Yes	Nitrosopumilus maritimus SCM1		1	1
No Yes	Nanoarchaeum equitans Kin4-M		2	2
No Yes	Candidatus Korarchaeum cryptofilum OPF8		2	2
No Yes	Methanocella paludicola SANAE		2	2
No Yes	Methanosaeta thermophila PT		1	1
No Yes	Methanococcoides burtonii DSM 6242		1	1
No Yes	Methanosarcina acetivorans C2A		1	1
No Yes	Methanosarcina mazei Go1		1	1
No Yes	Methanosarcina barkeri Fusaro		1	1
No Yes	Methanohalophilus mahii DSM 5219		1	1
No Yes	Methanosphaerula palustris E1-9c		1	1
No Yes	Candidatus Methanoregula boonei 6A8		1	1
No Yes	Methanospirillum hungatei JF-1		5	5
No Yes	Methanocorpusculum labreanum Z		1	1
No Yes	Methanoculleus marisnigri JR1		2	2
No Yes	Methanopyrus kandleri AV19		3	3
No Yes	Ferroglobus placidus DSM 10642		2	2
No Yes	Archaeoglobus profundus DSM 5631		3	3
No Yes	Archaeoglobus fulgidus DSM 4304		2	2
No Yes	Thermococcus onnurineus NA1		2	2
No Yes	Thermococcus kodakarensis KOD1		3	3
No Yes	Thermococcus gammatolerans EJ3		3	3
No Yes	Thermococcus sibiricus MM 739		3	3
No Yes	Pyrococcus horikoshii OT3		2	2
No Yes	Pyrococcus abyssi GE5		2	2
No Yes	Pyrococcus furiosus DSM 3638		3	3
No Yes	Haloquadratum walsbyi DSM 16790		1	1
No Yes	Halomicrobium mukohataei DSM 12286		1	1
No Yes	Halorhabdus utahensis DSM 12940		1	1
No Yes	Haloterrigena turkmenica DSM 5511		1	1
No Yes	Natronomonas pharaonis DSM 2160		1	1
No Yes	Natrialba magadii ATCC 43099		1	1
No Yes	Halorubrum lacusprofundi ATCC 49239		1	1
No Yes	Haloferax volcanii DS2		1	1
No Yes	Halobacterium salinarum R1		1	1
No Yes	Halobacterium sp. NRC-1		1	1
No Yes	Haloarcula marismortui ATCC 43049		1	1
No Yes	Methanocaldococcus sp. FS406-22		5	5
No Yes	Methanocaldococcus fervens AG86		5	5
No Yes	Methanocaldococcus vulcanius M7		6	6
No Yes	Methanocaldococcus jannaschii DSM 2661		6	6
No Yes	Methanococcus aeolicus Nankai-3		3	3
No Yes	Methanococcus maripaludis S2		3	3
No Yes	Methanococcus vannielii SB		3	3
No Yes	Methanothermobacter thermautotrophicus Delta H		3	3
No Yes	Methanosphaera stadtmanae DSM 3091		6	6
No Yes	Methanobrevibacter ruminantium M1		6	6
No Yes	Methanobrevibacter smithii ATCC 35061		3	3
No Yes	uncultured methanogenic archaeon RC-I		2	2
No Yes	Thermofilum pendens Hrk 5		1	1
No Yes	Caldivirga maquilingensis IC-167		1	1
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	125	125
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	89	89
No Yes	Cryptococcus neoformans var. grubii H99		20	20
No Yes	Cryptococcus neoformans B-3501A		22	22
No Yes	Ajellomyces dermatitidis ER-3		37	37
No Yes	Histoplasma capsulatum H143		17	17
No Yes	Histoplasma capsulatum H88		20	20
No Yes	Histoplasma capsulatum G186AR		23	22
No Yes	Paracoccidioides brasiliensis Pb01		36	35
No Yes	Paracoccidioides brasiliensis Pb03		23	22
No Yes	Coccidioides posadasii str. Silveira		22	21
No Yes	Coccidioides immitis RMSCC 3703		21	21
No Yes	Coccidioides immitis RMSCC 2394		23	22
No Yes	Coccidioides immitis H538.4		20	20
No Yes	Aspergillus fumigatus A1163		22	21
No Yes	Candida albicans WO-1		26	25
No Yes	Saccharomyces cerevisiae YJM789		22	22
No Yes	Saccharomyces cerevisiae RM11-1a		24	24
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	24	24
No Yes	Schizosaccharomyces pombe 972h-		25	25
No Yes	Batrachochytrium dendrobatidis JAM81		21	20
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	93	93
No Yes	Plasmodium falciparum HB3		12	12
No Yes	Plasmodium falciparum Dd2		4	4
No Yes	Thermus thermophilus HB8		1	1
No Yes	Methanococcus maripaludis C6		3	3
No Yes	Methanococcus maripaludis C7		3	3
No Yes	Methanococcus maripaludis C5		3	3
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	124	122
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		18	18
No Yes	Lotus japonicus (Early assembly)		9	9
No Yes	Prunus persica (Early draft)	Peach	68	68
No Yes	Manihot esculenta (Early draft)	Cassava	101	101
No Yes	Ricinus communis (Early assembly)	Castor bean	67	67
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	78	78
No Yes	Phoenix dactylifera (Early draft)	Date palm	21	21
No Yes	Trypanosoma vivax (Parial)		41	41
No Yes	Trypanosoma congolense (Partial)		17	17
No Yes	Toxoplasma gondii GT1 (Early assembly)		11	11
No Yes	Toxoplasma gondii VEG (Early assembly)		11	11
No Yes	Toxoplasma gondii RH (Archived)		12	12
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	112	111
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	97	96
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	71	71
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	92	92
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	124	123
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	99	98
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	82	82
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	85	84
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	74	74
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	95	94
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	115	113
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	56	56
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	82	81
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	80	79
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	74	73
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	89	88
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	51	50
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	94	92
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	139	137
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	59	59
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	93	92
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	106	104
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	59	59
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	97	96
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	87	87
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	77	76
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	95	95
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	73	71
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	71	71
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	73	72
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	74	73
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	72	71
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	53	53
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	54	52
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	130	128
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	61	61
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	73	72
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	35	35
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	53	52
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	215	214
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	155	154
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	123	122
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	73	73
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	88	85
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	115	112
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		43	38
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		22	22
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	21	21
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	125	125
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	112	112
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	82	82
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	55	55
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	88	88
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	88	88
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	83	83
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	108	108
No Yes	NCBI viral sequences (Viral)		7	6
No Yes	PDB chains (SCOP 1.73) (PDB)		73	73
No Yes	TargetDB (Targets)		134	134
No Yes	UniProt 15.0 (UniProt)		11076	11015
No Yes	UniProt 15.0 viral sequences (Viral)		8	7