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Nucleosome core histones family domain assignments
in
Saccharomyces cerevisiae YPS163

Assignment details

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Saccharomyces cerevisiae YPS163 has 7 significant domains in 7 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
YBL002W   1.6e-50   0.0000105   13-128   1id3 D:  
YBL003C   3.14e-46   0.00000557   7-127   1id3 C:  
YBR010W   2.85e-53   0.00000146   2-133   1kx5 A:  
YDR225W   4.64e-46   0.00000678   17-121   1id3 C:  
YKL049C   4.02e-34   0.0000858   113-227   1kx5 A:  
YNL030W   4.19e-31   0.0000082   3-102   1kx5 B:  
YNL031C   2.85e-53   0.00000146   2-133   1kx5 A:  
 
Weak hits:
YDR224C   1.4e-16   0.00075   12-70   1kx5 D:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   79264 79264
No Yes Homo sapiens 76_38 Human 112 112
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 67 67
No Yes Gorilla gorilla 76_3.1 Western gorilla 60 60
No Yes Pongo abelii 76_2 Sumatran orangutan 68 68
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 66 66
No Yes Papio anubis 76 Olive baboon 62 62
No Yes Macaca mulatta 76_1 Rhesus monkey 94 94
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 85 85
No Yes Otolemur garnettii 76_3 Small-eared galago 71 71
No Yes Microcebus murinus 76_1 Gray mouse lemur 55 55
No Yes Rattus norvegicus 76_5.0 Norway rat 68 68
No Yes Mus musculus 76_38 House mouse 83 83
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 60 60
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 56 56
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 78 75
No Yes Cavia porcellus 76_3 Domestic guinea pig 53 53
No Yes Oryctolagus cuniculus 76_2 Rabbit 62 62
No Yes Ochotona princeps 76 American pika 71 71
No Yes Tupaia belangeri 76 Northern tree shrew 35 35
No Yes Sus scrofa 76_10.2 Pig 55 55
No Yes Bos taurus 76_3.1 Cattle 140 140
No Yes Ovis aries 76_3.1 Sheep 69 69
No Yes Vicugna pacos 76_1 Alpaca 42 42
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 68 68
No Yes Mustela putorius furo 76_1.0 Domestic ferret 33 33
No Yes Ailuropoda melanoleuca 76_1 Giant panda 69 69
No Yes Canis familiaris 76_3.1 Dog 76 76
No Yes Felis catus 76_6.2 Domestic cat 69 69
No Yes Equus caballus 76_2 Horse 72 72
No Yes Myotis lucifugus 76_2.0 Little brown bat 66 66
No Yes Pteropus vampyrus 76_1 Large flying fox 48 48
No Yes Sorex araneus 76_1 European shrew 75 75
No Yes Erinaceus europaeus 76 Western European hedgehog 56 56
No Yes Procavia capensis 76_1 Cape rock hyrax 50 50
No Yes Loxodonta africana 76_3 African savanna elephant 78 78
No Yes Echinops telfairi 76 Small Madagascar hedgehog 52 52
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 71 69
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 48 48
No Yes Macropus eugenii 76_1.0 Tammar wallaby 32 32
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 37 37
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 29 29
No Yes Ornithorhynchus anatinus 76_5 Platypus 113 113
No Yes Saccoglossus kowalevskii v3.0   132 121
No Yes Petromyzon marinus 76_7.0 Sea lamprey 43 43
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 48 48
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 25 25
No Yes Meleagris gallopavo 76_2 Turkey 24 24
No Yes Gallus gallus 76_4 Chicken 29 29
No Yes Anas platyrhynchos 76_1.0 Mallard 38 38
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 50 50
No Yes Anolis carolinensis 76_2.0 Green anole 43 43
No Yes Xenopus laevis African clawed frog 435 435
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 146 146
No Yes Latimeria chalumnae 76_1 Coelacanth 24 24
No Yes Lepisosteus oculatus 76 Spotted gar 15 15
No Yes Gadus morhua 76_1 Atlantic cod 89 89
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 40 40
No Yes Takifugu rubripes 76_4 Torafugu 146 144
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 133 133
No Yes Oryzias latipes 76_1 Japanese medaka 50 50
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 20 20
No Yes Poecilia formosa 76 Amazon molly 41 38
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 31 31
No Yes Astyanax mexicanus 76 Mexican tetra 18 18
No Yes Danio rerio 76_9 Zebrafish 151 150
No Yes Oikopleura dioica   36 35
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 27 27
No Yes Ciona intestinalis 76 Vase tunicate 4 4
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 352 351
No Yes Adineta vaga   51 51
No Yes Octopus bimaculoides 280   59 58
No Yes Crassostrea gigas 22 Pacific oyster 34 34
No Yes Lottia gigantea Owl limpet 82 80
No Yes Helobdella robusta   36 36
No Yes Capitella sp. I   93 87
No Yes Danaus plexippus OGS1.0 Monarch butterfly 11 11
No Yes Heliconius melpomene Postman butterfly 9 8
No Yes Bombyx mori Domestic silkworm 4 4
No Yes Nasonia vitripennis Jewel wasp 77 77
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 16 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 15 15
No Yes Linepithema humile v1.1 Argentine ant 16 16
No Yes Solenopsis invicta v.2.2.3 Red fire ant 9 9
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 19 19
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 18 18
No Yes Atta cephalotes v1.1   16 16
No Yes Camponotus floridanus v3.3 Florida carpenter ant 18 18
No Yes Lucilia cuprina Australian sheep blowfly 7 7
No Yes Drosophila grimshawi 1.3   145 145
No Yes Drosophila willistoni 1.3   35 35
No Yes Drosophila pseudoobscura 2.13   12 12
No Yes Drosophila persimilis 1.3   40 40
No Yes Drosophila suzukii   24 23
No Yes Drosophila yakuba 1.3   12 12
No Yes Drosophila simulans 1.3   64 64
No Yes Drosophila sechellia 1.3   292 291
No Yes Drosophila melanogaster 76_5 Fruit fly 100 100
No Yes Drosophila erecta 1.3   137 137
No Yes Drosophila ananassae 1.3   86 85
No Yes Drosophila virilis 1.2   87 87
No Yes Drosophila mojavensis 1.3   53 53
No Yes Megaselia scalaris 22   11 11
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 58 58
No Yes Culex pipiens quinquefasciatus Southern house mosquito 96 96
No Yes Anopheles darlingi 22 American malaria mosquito 5 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 33 33
No Yes Tribolium castaneum 3.0 Red flour beetle 16 16
No Yes Pediculus humanus corporis (Early assembly) Human body louse 25 25
No Yes Rhodnius prolixus 22   21 21
No Yes Acyrthosiphon pisum Pea aphid 18 18
No Yes Daphnia pulex Common water flea 99 99
No Yes Strigamia maritima 22   29 28
No Yes Sarcoptes scabiei   11 11
No Yes Tetranychus urticae Two-spotted spider mite 18 18
No Yes Ixodes scapularis (Preliminary) Black-legged tick 7 7
No Yes Pristionchus pacificus   13 12
No Yes Meloidogyne incognita Southern root-knot nematode 23 23
No Yes Meloidogyne hapla   6 6
No Yes Onchocerca volvulus 22   19 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 24 24
No Yes Caenorhabditis japonica   25 25
No Yes Caenorhabditis brenneri   140 140
No Yes Caenorhabditis remanei   62 62
No Yes Caenorhabditis elegans 76_235 Roundworm 76 76
No Yes Caenorhabditis briggsae 2   48 48
No Yes Trichinella spiralis 22   53 53
No Yes Hymenolepis microstoma   16 16
No Yes Echinococcus multilocularis   63 63
No Yes Echinococcus granulosus   15 15
No Yes Taenia solium Pork tapeworm 25 25
No Yes Schistosoma mansoni   20 20
No Yes Mnemiopsis leidyi Sea walnut 4 4
No Yes Thelohanellus kitauei   3 3
No Yes Acropora digitifera v1.0   8 7
No Yes Nematostella vectensis 1.0 Starlet sea anemone 152 143
No Yes Hydra vulgaris   17 17
No Yes Amphimedon queenslandica   16 16
No Yes Trichoplax adhaerens   10 10
No Yes Proterospongia sp. ATCC 50818   11 11
No Yes Monosiga brevicollis   15 15
No Yes Sphaeroforma arctica JP610   13 13
No Yes Capsaspora owczarzaki ATCC 30864   15 15
No Yes Conidiobolus coronatus NRRL28638 v1.0   8 8
No Yes Malassezia globosa CBS 7966   16 16
No Yes Sporisorium reilianum 22   7 7
No Yes Ustilago maydis   7 7
No Yes Wallemia sebi v1.0   19 19
No Yes Mixia osmundae IAM 14324 v1.0   10 10
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   15 15
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   20 20
No Yes Melampsora laricis-populina   19 19
No Yes Rhodotorula graminis WP1 v1.0   16 16
No Yes Sporobolomyces roseus IAM 13481   22 22
No Yes Microbotryum violaceum 22   23 23
No Yes Sphaerobolus stellatus v1.0   16 16
No Yes Piloderma croceum F 1598 v1.0   20 20
No Yes Serpula lacrymans var. lacrymans S7.9   18 18
No Yes Coniophora puteana   18 18
No Yes Hydnomerulius pinastri v2.0   20 20
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   18 18
No Yes Pisolithus microcarpus 441 v1.0   18 18
No Yes Pisolithus tinctorius Marx 270 v1.0   15 15
No Yes Scleroderma citrinum Foug A v1.0   19 19
No Yes Coprinopsis cinerea okayama7 130 v3   14 14
No Yes Pleurotus ostreatus Oyster mushroom 17 17
No Yes Amanita thiersii Skay4041 v1.0   14 14
No Yes Amanita muscaria Koide v1.0 Fly agaric 19 19
No Yes Galerina marginata v1.0   15 15
No Yes Hebeloma cylindrosporum h7 v2.0   16 16
No Yes Laccaria bicolor S238N-H82   25 25
No Yes Agaricus bisporus var. bisporus   12 12
No Yes Schizophyllum commune   17 17
No Yes Stereum hirsutum FP-91666 SS1 v1.0   16 16
No Yes Heterobasidion annosum   15 15
No Yes Gloeophyllum trabeumv1.0   14 14
No Yes Punctularia strigosozonata v1.0   14 14
No Yes Phanerochaete chrysosporium RP-78 2.1   16 16
No Yes Sebacina vermifera MAFF 305830 v1.0   16 16
No Yes Fomitiporia mediterranea v1.0   16 16
No Yes Tulasnella calospora AL13/4D v1.0   18 18
No Yes Postia placenta   22 22
No Yes Wolfiporia cocos MD-104 SS10 v1.0   15 15
No Yes Fomitopsis pinicolav1.0   15 15
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   15 15
No Yes Trametes versicolor v1.0   14 14
No Yes Dichomitus squalens   17 17
No Yes Tremella mesenterica Witches' butter 10 10
No Yes Apiospora montagnei NRRL 25634 v1.0   8 8
No Yes Daldinia eschscholzii EC12 v1.0   8 8
No Yes Magnaporthe poae ATCC 64411 22   7 7
No Yes Magnaporthe grisea 70-15   7 7
No Yes Podospora anserina   7 7
No Yes Sporotrichum thermophile ATCC 42464   8 8
No Yes Thielavia terrestris NRRL 8126   7 7
No Yes Chaetomium globosum CBS 148.51   6 6
No Yes Neurospora tetrasperma   7 7
No Yes Neurospora discreta FGSC 8579   7 7
No Yes Neurospora crassa OR74A   7 7
No Yes Cryphonectria parasitica Chestnut blight fungus 7 7
No Yes Verticillium albo-atrum VaMs.102   5 5
No Yes Verticillium dahliae VdLs.17   7 7
No Yes Acremonium alcalophilumv 1.0   7 7
No Yes Glomerella graminicola 22   7 7
No Yes Fusarium graminearum   7 7
No Yes Nectria haematococca mpVI   7 7
No Yes Fusarium oxysporum f. sp. lycopersici 4286   6 6
No Yes Fusarium verticillioides 7600   7 7
No Yes Trichoderma asperellum CBS 433.97 v1.0   7 7
No Yes Trichoderma atroviride   7 7
No Yes Trichoderma citrinoviride v1.0   7 7
No Yes Trichoderma reesei 1.2   7 7
No Yes Trichoderma virens Gv29-8   7 7
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   7 7
No Yes Trichoderma harzianum CBS 226.95 v1.0   8 8
No Yes Amorphotheca resinae v1.0 Creosote fungus 7 7
No Yes Botrytis cinerea B05.10   7 7
No Yes Sclerotinia sclerotiorum   8 8
No Yes Blumeria graminis 22   7 7
No Yes Didymella exigua CBS 183.55 v1.0   8 8
No Yes Leptosphaeria maculans 22   6 6
No Yes Setosphaeria turcica v1.0   7 7
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   7 7
No Yes Cochliobolus victoriae FI3 v1.0   7 7
No Yes Cochliobolus carbonum 26-R-13 v1.0   7 7
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 7 7
No Yes Alternaria brassicicola   5 5
No Yes Cochliobolus lunatus m118 v2.0   7 7
No Yes Pyrenophora teres f. teres 22   7 7
No Yes Pyrenophora tritici-repentis   31 31
No Yes Stagonospora nodorum   6 6
No Yes Mycosphaerella graminicola IPO323   6 6
No Yes Zasmidium cellare ATCC 36951 v1.0   7 7
No Yes Septoria musiva v1.0   6 6
No Yes Mycosphaerella fijiensis CIRAD86   6 6
No Yes Dothistroma septosporum   6 6
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   7 7
No Yes Ajellomyces dermatitidis SLH14081   7 7
No Yes Histoplasma capsulatum class NAmI strain WU24   6 6
No Yes Microsporum canis CBS 113480   7 7
No Yes Arthroderma benhamiae CBS 112371   6 6
No Yes Trichophyton equinum CBS 127.97   7 7
No Yes Trichophyton verrucosum HKI 0517   6 6
No Yes Trichophyton tonsurans CBS 112818   6 6
No Yes Trichophyton rubrum CBS 118892   7 7
No Yes Paracoccidioides brasiliensis Pb18   7 7
No Yes Coccidioides posadasii RMSCC 3488   7 7
No Yes Coccidioides immitis RS   7 7
No Yes Uncinocarpus reesii 1704   7 7
No Yes Neosartorya fischeri NRRL 181   7 7
No Yes Penicillium chrysogenum Wisconsin 54-1255   7 7
No Yes Penicillium chrysogenum v1.0   7 7
No Yes Aspergillus acidus v1.0   7 7
No Yes Aspergillus fumigatus Af293   7 7
No Yes Aspergillus brasiliensis v1.0   7 7
No Yes Aspergillus nidulans FGSC A4   7 7
No Yes Aspergillus sydowii v1.0   7 7
No Yes Aspergillus versicolor v1.0   7 7
No Yes Aspergillus glaucus   7 7
No Yes Aspergillus zonatus v1.0   7 7
No Yes Aspergillus carbonarius ITEM 5010   7 7
No Yes Aspergillus terreus NIH2624   7 7
No Yes Aspergillus tubingensis v1.0   6 6
No Yes Aspergillus wentii v1.0   7 7
No Yes Aspergillus oryzae RIB40   7 7
No Yes Aspergillus niger 22   7 7
No Yes Aspergillus niger ATCC 1015   2 2
No Yes Aspergillus flavus NRRL3357   7 7
No Yes Aspergillus clavatus NRRL 1   7 7
No Yes Penicillium marneffei ATCC 18224   10 10
No Yes Tuber melanosporum Mel28 22   6 6
No Yes Tuber melanosporum Vittad Perigord truffle 6 6
No Yes Pichia membranifaciensv1.0   10 10
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   10 10
No Yes Pichia stipitis CBS 6054   11 11
No Yes Candida guilliermondii ATCC 6260   10 10
No Yes Lodderomyces elongisporus NRRL YB-4239   10 10
No Yes Debaromyces hansenii   11 11
No Yes Hansenula polymorpha v2.0   9 9
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   11 11
No Yes Candida dubliniensis CD36   11 11
No Yes Candida tropicalis MYA-3404   11 11
No Yes Candida parapsilosis   9 9
No Yes Candida albicans SC5314   9 9
No Yes Wickerhamomyces anomalus   10 10
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   5 5
No Yes Yarrowia lipolytica CLIB122   9 9
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   11 11
No Yes Candida lusitaniae ATCC 42720   8 8
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   9 9
No Yes Pichia pastoris GS115   6 6
No Yes Vanderwaltozyma polyspora DSM 70294   7 7
No Yes Candida glabrata CBS138   12 12
No Yes Kluyveromyces thermotolerans CBS 6340   10 10
No Yes Lachancea kluyveri   10 10
No Yes Kluyveromyces waltii   10 10
No Yes Ashbya gossypii ATCC 10895   9 9
No Yes Dekkera bruxellensis CBS 2499 v2.0   10 10
No Yes Zygosaccharomyces rouxii   9 9
No Yes Saccharomyces mikatae MIT   9 9
No Yes Saccharomyces paradoxus MIT   9 9
No Yes Saccharomyces cerevisiae 76 Baker's yeast 10 10
No Yes Saccharomyces bayanus MIT   9 9
No Yes Kluyveromyces lactis   10 10
No Yes Schizosaccharomyces cryophilus OY26 22   11 11
No Yes Schizosaccharomyces octosporus yFS286   11 11
No Yes Schizosaccharomyces japonicus yFS275   11 11
No Yes Schizosaccharomyces pombe Fission yeast 11 11
No Yes Catenaria anguillulae PL171 v1.0   9 9
No Yes Allomyces macrogynus ATCC 38327   13 13
No Yes Mortierella verticillata NRRL 6337   12 12
No Yes Phycomyces blakesleeanus   20 20
No Yes Rhizopus oryzae RA 99-880   20 20
No Yes Mucor circinelloides   14 14
No Yes Rhizomucor miehei CAU432   14 14
No Yes Spizellomyces punctatus DAOM BR117   13 13
No Yes Dictyostelium discoideum   5 5
No Yes Dictyostelium purpureum   5 5
No Yes Entamoeba dispar 1.2   6 6
No Yes Entamoeba invadens 1.2   7 7
No Yes Entamoeba histolytica 1   5 5
No Yes Selaginella moellendorffii   37 37
No Yes Pinus taeda Loblolly pine 107 97
No Yes Picea abies Norway spruce 90 90
No Yes Eucalyptus grandis v201 Rose gum 30 30
No Yes Theobroma cacao B97-61/B2 v1 Cacao 32 32
No Yes Gossypium raimondii v221   86 86
No Yes Citrus clementina v165   30 30
No Yes Citrus sinensis v154 Sweet orange 30 30
No Yes Thellungiella halophila v173   39 39
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 55 55
No Yes Capsella rubella v183   40 40
No Yes Arabidopsis lyrata Lyrate rockcress 55 53
No Yes Arabidopsis thaliana 10 Thale cress 55 55
No Yes Carica papaya Papaya 24 24
No Yes Medicago truncatula Barrel medic 78 78
No Yes Phaseolus vulgaris v186 French bean 47 47
No Yes Glycine max v109 Soybean 76 76
No Yes Cucumis sativus v122 Cucumber 33 33
No Yes Fragaria vesca Wild strawberry 43 43
No Yes Malus domestica v196 Apple 69 69
No Yes Prunus persica v139 Peach 34 34
No Yes Linum usitatissimum v200 Flax 60 60
No Yes Manihot esculenta v147 Cassava 50 50
No Yes Populus trichocarpa v156 Black cottonwood 63 63
No Yes Vitis vinifera Wine grape 28 28
No Yes Mimulus guttatus v140 Spotted monkey flower 37 37
No Yes Solanum lycopersicum v.2.3 Tomato 49 49
No Yes Solanum tuberosum Potato 62 62
No Yes Actinidia chinensis Hongyang   36 36
No Yes Aquilegia coerulea v195   55 55
No Yes Triticum urartu 22   103 101
No Yes Triticum aestivum 22 Bread wheat 298 298
No Yes Aegilops tauschii 22   98 98
No Yes Brachypodium distachyon Stiff brome 60 60
No Yes Oryza barthii 22 African wild rice 46 45
No Yes Oryza meridionalis 22   40 38
No Yes Oryza glumaepatula 22   49 48
No Yes Oryza glaberrima African rice 39 39
No Yes Oryza punctata 22   44 44
No Yes Oryza nivara 22   54 52
No Yes Oryza brachyantha 22 Malo sina 39 38
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 50 50
No Yes Oryza sativa v193 Rice 50 50
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 49 49
No Yes Zea mays subsp. mays Maize 127 127
No Yes Zea mays v181 Maize 125 125
No Yes Sorghum bicolor Sorghum 53 53
No Yes Setaria italica v164 Foxtail millet 47 47
No Yes Panicum virgatum v202 Switchgrass 111 111
No Yes Musa balbisiana Balbis banana 58 58
No Yes Musa acuminata 22 Wild Malaysian banana 50 50
No Yes Amborella trichopoda 22   32 32
No Yes Physcomitrella patens   48 48
No Yes Ostreococcus sp. RCC809   12 12
No Yes Ostreococcus lucimarinus CCE9901   11 11
No Yes Ostreococcus tauri   13 13
No Yes Bathycoccus prasinos   16 16
No Yes Micromonas sp. RCC299   16 16
No Yes Micromonas pusilla CCMP1545 v3.0   16 16
No Yes Coccomyxa subellipsoidea sp. C-169 v2   32 32
No Yes Asterochloris sp. Cgr/DA1pho v1.0   27 27
No Yes Chlorella variabilis sp. NC64A   29 29
No Yes Chlorella vulgaris   31 30
No Yes Volvox carteri f. nagariensis   48 46
No Yes Volvox carteri v199   53 53
No Yes Chlamydomonas reinhardtii 4.0   121 121
No Yes Cyanidioschyzon merolae strain 10D 22   7 7
No Yes Cyanidioschyzon merolae   10 10
No Yes Porphyridium purpureum 02_2012   10 10
No Yes Thecamonas trahens ATCC 50062   16 16
No Yes Bigelowiella natans CCMP2755 22   20 20
No Yes Giardia lamblia 2.3   4 4
No Yes Cyanophora paradoxa   18 18
No Yes Leishmania mexicana 2.4   8 8
No Yes Leishmania major strain Friedlin   7 7
No Yes Leishmania infantum JPCM5 2.4   5 5
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   5 5
No Yes Trypanosoma vivax   8 8
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Trypanosoma brucei TREU927 v4.1   11 11
No Yes Trypanosoma brucei gambiense v4.1   7 7
No Yes Ectocarpus siliculosus   35 35
No Yes Aureococcus anophagefferens   45 45
No Yes Albugo laibachii 22   9 9
No Yes Pythium iwayamai DAOM BR242034 22   9 9
No Yes Pythium arrhenomanes ATCC 12531 22   6 6
No Yes Pythium ultimum v1.7-2   21 21
No Yes Pythium aphanidermatum DAOM BR444 22   9 9
No Yes Pythium vexans DAOM BR484 22   8 8
No Yes Pythium irregulare DAOM BR486 22   8 8
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 12 12
No Yes Phytophthora sojae 1.1   8 8
No Yes Phytophthora infestans T30-4   14 14
No Yes Phytophthora capsici   12 12
No Yes Hyaloperonospora arabidopsidis 22   8 8
No Yes Phaeodactylum tricornutumCCAP 1055/1   13 13
No Yes Fragilariopsis cylindrus   36 36
No Yes Thalassiosira pseudonana CCMP1335   25 25
No Yes Perkinsus marinus ATCC 50983   86 85
No Yes Paramecium tetraurelia   41 41
No Yes Tetrahymena thermophila SB210 1   10 10
No Yes Ichthyophthirius multifiliis strain G5   22 22
No Yes Cryptosporidium hominis   7 7
No Yes Cryptosporidium muris   7 7
No Yes Cryptosporidium parvum Iowa II   7 7
No Yes Neospora caninum   9 9
No Yes Toxoplasma gondii VEG   8 8
No Yes Toxoplasma gondii ME49   9 9
No Yes Toxoplasma gondii GT1   8 8
No Yes Babesia bovis T2Bo   16 16
No Yes Theileria parva   8 8
No Yes Theileria annulata   8 8
No Yes Plasmodium falciparum 3D7   8 8
No Yes Plasmodium vivax SaI-1 7.0   8 8
No Yes Plasmodium knowlesi strain H   8 8
No Yes Plasmodium yoelii ssp. yoelii 1   6 6
No Yes Plasmodium chabaudi   8 8
No Yes Plasmodium berghei ANKA   8 8
No Yes Symbiodinium minutum clade B1 v1.2   2 2
No Yes Naegleria gruberi   12 12
No Yes Trichomonas vaginalis   72 72
No Yes Guillardia theta CCMP2712 v1.0   19 19
No Yes Emiliania huxleyi CCMP1516   44 44
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 210 206
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 97 97
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 34 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 23 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 70 70
No Yes Cryptococcus neoformans var. grubii H99   8 8
No Yes Cryptococcus neoformans B-3501A   8 8
No Yes Cryptococcus neoformans JEC21   6 6
No Yes Ajellomyces dermatitidis ER-3   7 7
No Yes Histoplasma capsulatum H143   5 5
No Yes Histoplasma capsulatum H88   6 6
No Yes Histoplasma capsulatum G186AR   7 7
No Yes Paracoccidioides brasiliensis Pb01   14 14
No Yes Paracoccidioides brasiliensis Pb03   8 8
No Yes Coccidioides posadasii str. Silveira   7 7
No Yes Coccidioides immitis RMSCC 3703   5 5
No Yes Coccidioides immitis RMSCC 2394   7 7
No Yes Coccidioides immitis H538.4   5 5
No Yes Aspergillus fumigatus A1163   7 7
No Yes Candida albicans WO-1   11 11
No Yes Saccharomyces cerevisiae UC5   6 6
No Yes Saccharomyces cerevisiae PW5   4 4
No Yes Saccharomyces cerevisiae FL100   7 7
No Yes Saccharomyces cerevisiae CLIB382   1 1
No Yes Saccharomyces cerevisiae CLIB324   7 7
No Yes Saccharomyces cerevisiae CBS7960   8 8
No Yes Saccharomyces cerevisiae YJM269   10 10
No Yes Saccharomyces cerevisiae T7   10 10
No Yes Saccharomyces cerevisiae FostersB   10 10
No Yes Saccharomyces cerevisiae FostersO   9 9
No Yes Saccharomyces cerevisiae VL3   10 10
No Yes Saccharomyces cerevisiae Vin13   8 8
No Yes Saccharomyces cerevisiae LalvinQA23   8 8
No Yes Saccharomyces cerevisiae AWRI796   9 9
No Yes Saccharomyces cerevisiae Sigma1278b   10 10
No Yes Saccharomyces cerevisiae W303   10 10
No Yes Saccharomyces cerevisiae JAY291   10 10
No Yes Saccharomyces cerevisiae AWRI1631   7 7
No Yes Saccharomyces cerevisiae YPS163   7 7
No Yes Saccharomyces cerevisiae M22   6 6
No Yes Saccharomyces cerevisiae T73   4 4
No Yes Saccharomyces cerevisiae CLIB215   9 9
No Yes Saccharomyces cerevisiae Y10   7 7
No Yes Saccharomyces cerevisiae YJM789   8 8
No Yes Saccharomyces cerevisiae YJM789   10 10
No Yes Saccharomyces cerevisiae RM11-1a   10 10
No Yes Saccharomyces cerevisiae RM11-1a   10 10
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 10 10
No Yes Schizosaccharomyces pombe 972h-   11 11
No Yes Batrachochytrium dendrobatidis JEL423   7 7
No Yes Batrachochytrium dendrobatidis JAM81   7 7
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 33 33
No Yes Hordeum vulgare 22 Domesticated barley 23 23
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 49 49
No Yes Trypanosoma brucei Lister 427 v4.1   11 11
No Yes Neospora caninum Nc-Liverpool 6.2   9 9
No Yes Plasmodium falciparum HB3   7 7
No Yes Plasmodium falciparum Dd2   1 1
No Yes Homo sapiens (NCBI version) Human 80 80
No Yes Homo sapiens 75_37 (old version GRC) Human 127 127
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 71 71
No Yes Heliconius numata (Incomplete)   8 8
No Yes Loa loa v3.3 (Request) Eye worm 18 18
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 13 13
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 14 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   8 8
No Yes Encephalitozoon intestinalis (endoparasite)   2 2
No Yes Encephalitozoon cuniculi (endoparasite)   2 2
No Yes Pinus sylvestris (Incomplete) Scots pine 2 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 22 22
No Yes Lotus japonicus (Early assembly)   47 47
No Yes Malus x domestica (Duplicate) Apple 70 70
No Yes Ricinus communis (Early assembly) Castor bean 32 32
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   87 82
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 49 49
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 49 49
No Yes Phoenix dactylifera (Early draft) Date palm 5 5
No Yes Guillardia theta (nucleomorph)   3 3
No Yes Homo sapiens 69_37 Human 86 86
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 66 66
No Yes Gorilla gorilla 69_3.1 Western gorilla 60 60
No Yes Pongo abelii 69_2 Sumatran orangutan 66 66
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 66 66
No Yes Macaca mulatta 69_1 Rhesus monkey 89 89
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 58 58
No Yes Otolemur garnettii 69_3 Small-eared galago 71 71
No Yes Microcebus murinus 69_1 Gray mouse lemur 55 55
No Yes Rattus norvegicus 69_3.4 Norway rat 63 63
No Yes Mus musculus 69_38 House mouse 70 70
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 60 60
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 56 56
No Yes Cavia porcellus 69_3 Domestic guinea pig 53 53
No Yes Oryctolagus cuniculus 69_2 Rabbit 63 63
No Yes Ochotona princeps 69 American pika 71 71
No Yes Tupaia belangeri 69 Northern tree shrew 35 35
No Yes Sus scrofa 69_10.2 Pig 53 53
No Yes Bos taurus 69_3.1 Cattle 139 139
No Yes Vicugna pacos 69_1 Alpaca 42 42
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 68 68
No Yes Mustela putorius furo 69_1.0 Domestic ferret 32 32
No Yes Ailuropoda melanoleuca 69_1 Giant panda 67 67
No Yes Canis familiaris 69_3.1 Dog 70 70
No Yes Felis catus 69 Domestic cat 37 37
No Yes Equus caballus 69_2 Horse 72 72
No Yes Myotis lucifugus 69_2.0 Little brown bat 63 63
No Yes Pteropus vampyrus 69_1 Large flying fox 48 48
No Yes Sorex araneus 69_1 European shrew 75 75
No Yes Erinaceus europaeus 69 Western European hedgehog 56 56
No Yes Procavia capensis 69_1 Cape rock hyrax 50 50
No Yes Loxodonta africana 69_3 African savanna elephant 77 77
No Yes Echinops telfairi 69 Small Madagascar hedgehog 52 52
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 53 53
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 48 48
No Yes Macropus eugenii 69_1.0 Tammar wallaby 32 32
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 36 36
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 26 26
No Yes Ornithorhynchus anatinus 69_5 Platypus 109 109
No Yes Petromyzon marinus 69_7.0 Sea lamprey 42 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 48 48
No Yes Meleagris gallopavo 69_2 Turkey 22 22
No Yes Gallus gallus 69_2 Chicken 36 36
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 50 50
No Yes Anolis carolinensis 69_2.0 Green anole 42 42
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 144 144
No Yes Latimeria chalumnae 69_1 Coelacanth 23 23
No Yes Gadus morhua 69_1 Atlantic cod 87 87
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 40 40
No Yes Takifugu rubripes 69_4 Torafugu 97 95
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 97 97
No Yes Oryzias latipes 69_1 Japanese medaka 48 48
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 20 20
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 31 31
No Yes Danio rerio 69_9 Zebrafish 121 121
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 27 27
No Yes Ciona intestinalis 69 Vase tunicate 4 4
No Yes Drosophila melanogaster 69_5 Fruit fly 92 92
No Yes Caenorhabditis elegans 69_215 Roundworm 69 69
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 10 10
No Yes Arabidopsis thaliana 10 Thale cress 45 45
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   356 356
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   4323 4291
No Yes Uniprot 2017_06 genome   45189 44935
No Yes Global Ocean Sampling Expedition (GOS)   93 92
No Yes NCBI viral sequences (Viral)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   62 61
No Yes Protein Data Bank (all PDB sequenc)   1387 1378
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2925 2915
No Yes TargetDB (Targets)   66 66
No Yes UniProt viral sequences (Viral)   3 3

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