SUPERFAMILY 1.75 HMM library and genome assignments server


Bromodomain superfamily domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   44455 44455
No Yes Homo sapiens 76_38 Human 352 237
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 49 36
No Yes Gorilla gorilla 76_3.1 Western gorilla 73 56
No Yes Pongo abelii 76_2 Sumatran orangutan 62 42
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 54 40
No Yes Papio anubis 76 Olive baboon 61 42
No Yes Macaca mulatta 76_1 Rhesus monkey 123 86
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 151 117
No Yes Otolemur garnettii 76_3 Small-eared galago 54 40
No Yes Microcebus murinus 76_1 Gray mouse lemur 47 36
No Yes Tarsius syrichta 76_1 Philippine tarsier 40 30
No Yes Rattus norvegicus 76_5.0 Norway rat 63 39
No Yes Mus musculus 76_38 House mouse 221 131
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 49 38
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 44 32
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 60 45
No Yes Cavia porcellus 76_3 Domestic guinea pig 50 38
No Yes Oryctolagus cuniculus 76_2 Rabbit 56 40
No Yes Ochotona princeps 76 American pika 44 32
No Yes Tupaia belangeri 76 Northern tree shrew 37 28
No Yes Sus scrofa 76_10.2 Pig 47 41
No Yes Bos taurus 76_3.1 Cattle 61 45
No Yes Ovis aries 76_3.1 Sheep 71 51
No Yes Vicugna pacos 76_1 Alpaca 39 29
No Yes Tursiops truncatus 76_1 Bottlenosed dolphin 50 36
No Yes Mustela putorius furo 76_1.0 Domestic ferret 53 40
No Yes Ailuropoda melanoleuca 76_1 Giant panda 61 46
No Yes Canis familiaris 76_3.1 Dog 107 76
No Yes Felis catus 76_6.2 Domestic cat 57 43
No Yes Equus caballus 76_2 Horse 76 54
No Yes Myotis lucifugus 76_2.0 Little brown bat 60 45
No Yes Pteropus vampyrus 76_1 Large flying fox 51 38
No Yes Sorex araneus 76_1 European shrew 40 28
No Yes Erinaceus europaeus 76 Western European hedgehog 40 30
No Yes Procavia capensis 76_1 Cape rock hyrax 45 33
No Yes Loxodonta africana 76_3 African savanna elephant 93 68
No Yes Echinops telfairi 76 Small Madagascar hedgehog 43 33
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 68 53
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 35 26
No Yes Macropus eugenii 76_1.0 Tammar wallaby 42 32
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 69 52
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 50 36
No Yes Ornithorhynchus anatinus 76_5 Platypus 47 38
No Yes Saccoglossus kowalevskii v3.0   153 79
No Yes Petromyzon marinus 76_7.0 Sea lamprey 35 21
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 49 36
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 46 36
No Yes Meleagris gallopavo 76_2 Turkey 63 44
No Yes Gallus gallus 76_4 Chicken 54 35
No Yes Anas platyrhynchos 76_1.0 Mallard 46 32
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 50 36
No Yes Anolis carolinensis 76_2.0 Green anole 49 35
No Yes Xenopus laevis African clawed frog 76 54
No Yes Xenopus tropicalis 76_4.2 Western clawed frog 71 49
No Yes Latimeria chalumnae 76_1 Coelacanth 57 47
No Yes Lepisosteus oculatus 76 Spotted gar 71 55
No Yes Gadus morhua 76_1 Atlantic cod 66 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 85 56
No Yes Takifugu rubripes 76_4 Torafugu 212 160
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 82 63
No Yes Oryzias latipes 76_1 Japanese medaka 73 54
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 68 50
No Yes Poecilia formosa 76 Amazon molly 77 56
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 108 76
No Yes Astyanax mexicanus 76 Mexican tetra 71 51
No Yes Danio rerio 76_9 Zebrafish 128 88
No Yes Branchiostoma floridae 1.0 Florida lancelet 47 38
No Yes Oikopleura dioica   20 14
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 59 43
No Yes Ciona intestinalis 76 Vase tunicate 26 21
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 46 34
No Yes Crassostrea gigas 22 Pacific oyster 28 20
No Yes Lottia gigantea Owl limpet 29 22
No Yes Helobdella robusta   41 32
No Yes Capitella sp. I   33 25
No Yes Danaus plexippus OGS1.0 Monarch butterfly 26 20
No Yes Heliconius melpomene Postman butterfly 21 14
No Yes Bombyx mori Domestic silkworm 25 18
No Yes Nasonia vitripennis Jewel wasp 19 17
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 44 39
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 29 21
No Yes Linepithema humile v1.1 Argentine ant 28 20
No Yes Solenopsis invicta v.2.2.3 Red fire ant 27 19
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 31 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 29 21
No Yes Atta cephalotes v1.1   28 20
No Yes Camponotus floridanus v3.3 Florida carpenter ant 28 20
No Yes Drosophila grimshawi 1.3   37 28
No Yes Drosophila willistoni 1.3   29 20
No Yes Drosophila pseudoobscura 2.13   37 26
No Yes Drosophila persimilis 1.3   29 24
No Yes Drosophila suzukii   40 22
No Yes Drosophila yakuba 1.3   28 19
No Yes Drosophila simulans 1.3   24 16
No Yes Drosophila sechellia 1.3   28 19
No Yes Drosophila melanogaster 76_5 Fruit fly 76 55
No Yes Drosophila erecta 1.3   29 20
No Yes Drosophila ananassae 1.3   29 21
No Yes Drosophila virilis 1.2   29 20
No Yes Drosophila mojavensis 1.3   33 24
No Yes Megaselia scalaris 22   10 8
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 29 21
No Yes Culex pipiens quinquefasciatus Southern house mosquito 25 17
No Yes Anopheles darlingi 22 American malaria mosquito 21 17
No Yes Anopheles gambiae 49_3j African malaria mosquito 25 17
No Yes Tribolium castaneum 3.0 Red flour beetle 27 19
No Yes Pediculus humanus corporis (Early assembly) Human body louse 47 38
No Yes Rhodnius prolixus 22   22 16
No Yes Acyrthosiphon pisum Pea aphid 24 17
No Yes Daphnia pulex Common water flea 41 32
No Yes Strigamia maritima 22   26 19
No Yes Tetranychus urticae Two-spotted spider mite 25 20
No Yes Ixodes scapularis (Preliminary) Black-legged tick 25 17
No Yes Pristionchus pacificus   19 15
No Yes Meloidogyne incognita Southern root-knot nematode 19 14
No Yes Meloidogyne hapla   10 9
No Yes Onchocerca volvulus 22   23 16
No Yes Brugia malayi WS218 Agent of lymphatic filariasis 42 30
No Yes Caenorhabditis japonica   23 13
No Yes Caenorhabditis brenneri   37 23
No Yes Caenorhabditis remanei   29 20
No Yes Caenorhabditis elegans 76_235 Roundworm 46 34
No Yes Caenorhabditis briggsae 2   25 16
No Yes Trichinella spiralis 22   28 17
No Yes Hymenolepis microstoma   32 24
No Yes Echinococcus multilocularis   23 16
No Yes Echinococcus granulosus   26 19
No Yes Taenia solium Pork tapeworm 20 17
No Yes Schistosoma mansoni   27 21
No Yes Acropora digitifera v1.0   34 23
No Yes Nematostella vectensis 1.0 Starlet sea anemone 27 20
No Yes Hydra vulgaris   21 17
No Yes Amphimedon queenslandica   47 37
No Yes Trichoplax adhaerens   23 16
No Yes Proterospongia sp. ATCC 50818   26 19
No Yes Monosiga brevicollis   27 20
No Yes Sphaeroforma arctica JP610   25 20
No Yes Capsaspora owczarzaki ATCC 30864   19 16
No Yes Conidiobolus coronatus NRRL28638 v1.0   10 9
No Yes Malassezia globosa CBS 7966   30 22
No Yes Sporisorium reilianum 22   16 12
No Yes Ustilago maydis   16 12
No Yes Wallemia sebi v1.0   14 10
No Yes Mixia osmundae IAM 14324 v1.0   15 10
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   13 9
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   14 11
No Yes Melampsora laricis-populina   13 10
No Yes Rhodotorula graminis WP1 v1.0   14 9
No Yes Sporobolomyces roseus IAM 13481   13 8
No Yes Microbotryum violaceum 22   14 9
No Yes Sphaerobolus stellatus v1.0   15 10
No Yes Piloderma croceum F 1598 v1.0   16 11
No Yes Serpula lacrymans var. lacrymans S7.9   13 9
No Yes Coniophora puteana   15 11
No Yes Hydnomerulius pinastri v2.0   16 11
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   16 11
No Yes Pisolithus microcarpus 441 v1.0   17 12
No Yes Pisolithus tinctorius Marx 270 v1.0   20 14
No Yes Scleroderma citrinum Foug A v1.0   17 13
No Yes Coprinopsis cinerea okayama7 130 v3   15 11
No Yes Pleurotus ostreatus Oyster mushroom 16 11
No Yes Amanita thiersii Skay4041 v1.0   16 11
No Yes Amanita muscaria Koide v1.0 Fly agaric 16 11
No Yes Galerina marginata v1.0   16 11
No Yes Hebeloma cylindrosporum h7 v2.0   16 11
No Yes Laccaria bicolor S238N-H82   16 11
No Yes Agaricus bisporus var. bisporus   15 10
No Yes Schizophyllum commune   17 12
No Yes Stereum hirsutum FP-91666 SS1 v1.0   16 11
No Yes Heterobasidion annosum   22 17
No Yes Gloeophyllum trabeumv1.0   16 11
No Yes Punctularia strigosozonata v1.0   12 8
No Yes Phanerochaete chrysosporium RP-78 2.1   15 11
No Yes Sebacina vermifera MAFF 305830 v1.0   17 11
No Yes Fomitiporia mediterranea v1.0   18 13
No Yes Tulasnella calospora AL13/4D v1.0   16 10
No Yes Postia placenta   21 17
No Yes Wolfiporia cocos MD-104 SS10 v1.0   16 11
No Yes Fomitopsis pinicolav1.0   16 12
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   16 12
No Yes Trametes versicolor v1.0   16 11
No Yes Dichomitus squalens   13 9
No Yes Tremella mesenterica Witches' butter 15 11
No Yes Apiospora montagnei NRRL 25634 v1.0   13 10
No Yes Daldinia eschscholzii EC12 v1.0   11 8
No Yes Magnaporthe poae ATCC 64411 22   15 11
No Yes Magnaporthe grisea 70-15   11 8
No Yes Podospora anserina   12 9
No Yes Sporotrichum thermophile ATCC 42464   11 8
No Yes Thielavia terrestris NRRL 8126   12 9
No Yes Chaetomium globosum CBS 148.51   12 9
No Yes Neurospora tetrasperma   11 8
No Yes Neurospora discreta FGSC 8579   11 8
No Yes Neurospora crassa OR74A   11 8
No Yes Cryphonectria parasitica Chestnut blight fungus 12 9
No Yes Verticillium albo-atrum VaMs.102   8 7
No Yes Verticillium dahliae VdLs.17   11 8
No Yes Acremonium alcalophilumv 1.0   12 9
No Yes Glomerella graminicola 22   11 8
No Yes Fusarium graminearum   11 8
No Yes Nectria haematococca mpVI   12 9
No Yes Fusarium oxysporum f. sp. lycopersici 4286   13 10
No Yes Fusarium verticillioides 7600   11 8
No Yes Trichoderma asperellum CBS 433.97 v1.0   10 7
No Yes Trichoderma atroviride   11 8
No Yes Trichoderma citrinoviride v1.0   13 10
No Yes Trichoderma reesei 1.2   11 8
No Yes Trichoderma virens Gv29-8   11 8
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   9 7
No Yes Trichoderma harzianum CBS 226.95 v1.0   11 8
No Yes Amorphotheca resinae v1.0 Creosote fungus 11 8
No Yes Botrytis cinerea B05.10   11 8
No Yes Sclerotinia sclerotiorum   11 8
No Yes Blumeria graminis 22   10 7
No Yes Didymella exigua CBS 183.55 v1.0   11 8
No Yes Leptosphaeria maculans 22   11 8
No Yes Setosphaeria turcica v1.0   11 8
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   11 8
No Yes Cochliobolus victoriae FI3 v1.0   11 8
No Yes Cochliobolus carbonum 26-R-13 v1.0   11 8
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 9 7
No Yes Alternaria brassicicola   11 8
No Yes Cochliobolus lunatus m118 v2.0   11 8
No Yes Pyrenophora teres f. teres 22   14 10
No Yes Pyrenophora tritici-repentis   12 9
No Yes Stagonospora nodorum   11 9
No Yes Mycosphaerella graminicola IPO323   9 6
No Yes Zasmidium cellare ATCC 36951 v1.0   12 9
No Yes Septoria musiva v1.0   11 8
No Yes Mycosphaerella fijiensis CIRAD86   11 8
No Yes Dothistroma septosporum   11 8
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   14 11
No Yes Ajellomyces dermatitidis SLH14081   12 9
No Yes Histoplasma capsulatum class NAmI strain WU24   12 9
No Yes Microsporum canis CBS 113480   11 8
No Yes Arthroderma benhamiae CBS 112371   12 9
No Yes Trichophyton equinum CBS 127.97   11 9
No Yes Trichophyton verrucosum HKI 0517   12 9
No Yes Trichophyton tonsurans CBS 112818   12 9
No Yes Trichophyton rubrum CBS 118892   12 9
No Yes Paracoccidioides brasiliensis Pb18   10 7
No Yes Coccidioides posadasii RMSCC 3488   11 8
No Yes Coccidioides immitis RS   11 8
No Yes Uncinocarpus reesii 1704   10 7
No Yes Neosartorya fischeri NRRL 181   9 7
No Yes Penicillium chrysogenum Wisconsin 54-1255   10 8
No Yes Penicillium chrysogenum v1.0   10 8
No Yes Aspergillus acidus v1.0   9 8
No Yes Aspergillus fumigatus Af293   9 7
No Yes Aspergillus brasiliensis v1.0   9 7
No Yes Aspergillus nidulans FGSC A4   9 7
No Yes Aspergillus sydowii v1.0   10 8
No Yes Aspergillus versicolor v1.0   10 8
No Yes Aspergillus glaucus   9 7
No Yes Aspergillus zonatus v1.0   8 6
No Yes Aspergillus carbonarius ITEM 5010   9 7
No Yes Aspergillus terreus NIH2624   10 8
No Yes Aspergillus tubingensis v1.0   10 8
No Yes Aspergillus wentii v1.0   9 7
No Yes Aspergillus oryzae RIB40   7 6
No Yes Aspergillus niger 22   10 8
No Yes Aspergillus niger ATCC 1015   9 7
No Yes Aspergillus flavus NRRL3357   9 7
No Yes Aspergillus clavatus NRRL 1   9 7
No Yes Penicillium marneffei ATCC 18224   11 8
No Yes Tuber melanosporum Mel28 22   9 8
No Yes Tuber melanosporum Vittad Perigord truffle 9 8
No Yes Pichia membranifaciensv1.0   13 10
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   12 9
No Yes Pichia stipitis CBS 6054   12 9
No Yes Candida guilliermondii ATCC 6260   10 8
No Yes Lodderomyces elongisporus NRRL YB-4239   11 8
No Yes Debaromyces hansenii   12 9
No Yes Hansenula polymorpha v2.0   12 9
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   12 9
No Yes Candida dubliniensis CD36   12 9
No Yes Candida tropicalis MYA-3404   12 10
No Yes Candida parapsilosis   11 8
No Yes Candida albicans SC5314   12 9
No Yes Wickerhamomyces anomalus   12 9
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   9 8
No Yes Yarrowia lipolytica CLIB122   12 9
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   12 9
No Yes Candida lusitaniae ATCC 42720   12 9
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   12 9
No Yes Pichia pastoris GS115   12 9
No Yes Vanderwaltozyma polyspora DSM 70294   13 9
No Yes Candida glabrata CBS138   13 9
No Yes Kluyveromyces thermotolerans CBS 6340   11 8
No Yes Lachancea kluyveri   12 9
No Yes Kluyveromyces waltii   10 7
No Yes Ashbya gossypii ATCC 10895   11 8
No Yes Dekkera bruxellensis CBS 2499 v2.0   12 9
No Yes Zygosaccharomyces rouxii   11 8
No Yes Saccharomyces mikatae MIT   16 11
No Yes Saccharomyces paradoxus MIT   15 10
No Yes Saccharomyces cerevisiae 76 Baker's yeast 15 10
No Yes Saccharomyces bayanus MIT   13 8
No Yes Kluyveromyces lactis   11 8
No Yes Schizosaccharomyces cryophilus OY26 22   14 10
No Yes Schizosaccharomyces octosporus yFS286   14 10
No Yes Schizosaccharomyces japonicus yFS275   13 9
No Yes Schizosaccharomyces pombe Fission yeast 14 10
No Yes Catenaria anguillulae PL171 v1.0   19 15
No Yes Allomyces macrogynus ATCC 38327   31 19
No Yes Mortierella verticillata NRRL 6337   27 20
No Yes Phycomyces blakesleeanus   22 16
No Yes Rhizopus oryzae RA 99-880   28 19
No Yes Mucor circinelloides   25 19
No Yes Spizellomyces punctatus DAOM BR117   24 18
No Yes Dictyostelium discoideum   14 14
No Yes Dictyostelium purpureum   15 15
No Yes Entamoeba dispar 1.2   7 7
No Yes Entamoeba invadens 1.2   9 9
No Yes Entamoeba histolytica 1   8 8
No Yes Selaginella moellendorffii   20 20
No Yes Pinus taeda Loblolly pine 15 15
No Yes Picea abies Norway spruce 10 10
No Yes Eucalyptus grandis v201 Rose gum 37 37
No Yes Theobroma cacao B97-61/B2 v1 Cacao 28 26
No Yes Gossypium raimondii v221   155 155
No Yes Citrus clementina v165   43 43
No Yes Citrus sinensis v154 Sweet orange 83 83
No Yes Thellungiella halophila v173   29 29
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 43 43
No Yes Capsella rubella v183   28 28
No Yes Arabidopsis lyrata Lyrate rockcress 30 30
No Yes Arabidopsis thaliana 10 Thale cress 43 43
No Yes Carica papaya Papaya 21 21
No Yes Medicago truncatula Barrel medic 68 68
No Yes Phaseolus vulgaris v186 French bean 30 30
No Yes Glycine max v109 Soybean 61 61
No Yes Cucumis sativus v122 Cucumber 39 39
No Yes Fragaria vesca Wild strawberry 27 27
No Yes Malus domestica v196 Apple 59 59
No Yes Prunus persica v139 Peach 36 36
No Yes Linum usitatissimum v200 Flax 43 43
No Yes Manihot esculenta v147 Cassava 42 42
No Yes Populus trichocarpa v156 Black cottonwood 47 47
No Yes Vitis vinifera Wine grape 26 25
No Yes Mimulus guttatus v140 Spotted monkey flower 29 29
No Yes Solanum lycopersicum v.2.3 Tomato 25 25
No Yes Solanum tuberosum Potato 31 31
No Yes Actinidia chinensis Hongyang   60 59
No Yes Aquilegia coerulea v195   67 67
No Yes Triticum urartu 22   22 22
No Yes Triticum aestivum 22 Bread wheat 68 68
No Yes Aegilops tauschii 22   22 22
No Yes Brachypodium distachyon   33 31
No Yes Oryza barthii 22 African wild rice 34 34
No Yes Oryza meridionalis 22   25 25
No Yes Oryza glumaepatula 22   26 26
No Yes Oryza glaberrima African rice 19 19
No Yes Oryza punctata 22   34 34
No Yes Oryza nivara 22   33 33
No Yes Oryza brachyantha 22 Malo sina 24 24
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 37 37
No Yes Oryza sativa v193 Rice 37 37
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 37 37
No Yes Zea mays subsp. mays Maize 62 62
No Yes Zea mays v181 Maize 64 64
No Yes Sorghum bicolor Sorghum 23 23
No Yes Setaria italica v164 Foxtail millet 36 36
No Yes Panicum virgatum v202 Switchgrass 52 52
No Yes Musa balbisiana Balbis banana 35 34
No Yes Musa acuminata 22 Wild Malaysian banana 36 35
No Yes Amborella trichopoda 22   20 20
No Yes Physcomitrella patens   22 22
No Yes Ostreococcus sp. RCC809   12 11
No Yes Ostreococcus lucimarinus CCE9901   13 12
No Yes Ostreococcus tauri   12 11
No Yes Bathycoccus prasinos   13 12
No Yes Micromonas sp. RCC299   8 7
No Yes Micromonas pusilla CCMP1545 v3.0   12 11
No Yes Coccomyxa subellipsoidea sp. C-169 v2   13 12
No Yes Asterochloris sp. Cgr/DA1pho v1.0   12 10
No Yes Chlorella variabilis sp. NC64A   13 12
No Yes Chlorella vulgaris   16 13
No Yes Volvox carteri f. nagariensis   10 10
No Yes Volvox carteri v199   9 9
No Yes Chlamydomonas reinhardtii 4.0   15 12
No Yes Cyanidioschyzon merolae strain 10D 22   9 9
No Yes Cyanidioschyzon merolae   9 9
No Yes Porphyridium purpureum 02_2012   15 14
No Yes Thecamonas trahens ATCC 50062   14 14
No Yes Bigelowiella natans CCMP2755 22   24 21
No Yes Giardia lamblia 2.3   9 8
No Yes Cyanophora paradoxa   7 7
No Yes Leishmania mexicana 2.4   6 5
No Yes Leishmania major strain Friedlin   6 5
No Yes Leishmania infantum JPCM5 2.4   6 5
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   6 5
No Yes Trypanosoma vivax   8 7
No Yes Trypanosoma cruzi strain CL Brener   6 5
No Yes Trypanosoma congolense 2.4   11 10
No Yes Trypanosoma brucei TREU927 v4.1   7 6
No Yes Trypanosoma brucei gambiense v4.1   7 6
No Yes Ectocarpus siliculosus   45 35
No Yes Aureococcus anophagefferens   20 17
No Yes Albugo laibachii 22   34 22
No Yes Pythium iwayamai DAOM BR242034 22   30 23
No Yes Pythium arrhenomanes ATCC 12531 22   29 24
No Yes Pythium ultimum v1.7-2   28 22
No Yes Pythium aphanidermatum DAOM BR444 22   29 21
No Yes Pythium vexans DAOM BR484 22   30 22
No Yes Pythium irregulare DAOM BR486 22   29 21
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 24 18
No Yes Phytophthora sojae 1.1   22 16
No Yes Phytophthora infestans T30-4   25 22
No Yes Phytophthora capsici   14 11
No Yes Hyaloperonospora arabidopsidis 22   27 20
No Yes Phaeodactylum tricornutumCCAP 1055/1   22 22
No Yes Fragilariopsis cylindrus   36 36
No Yes Thalassiosira pseudonana CCMP1335   18 18
No Yes Perkinsus marinus ATCC 50983   31 31
No Yes Paramecium tetraurelia   30 30
No Yes Tetrahymena thermophila SB210 1   14 14
No Yes Ichthyophthirius multifiliis strain G5   11 11
No Yes Cryptosporidium hominis   11 11
No Yes Cryptosporidium muris   13 12
No Yes Cryptosporidium parvum Iowa II   13 12
No Yes Neospora caninum   13 12
No Yes Toxoplasma gondii VEG   12 11
No Yes Toxoplasma gondii ME49   13 12
No Yes Toxoplasma gondii GT1   11 10
No Yes Babesia bovis T2Bo   14 14
No Yes Theileria parva   8 8
No Yes Theileria annulata   10 10
No Yes Plasmodium falciparum 3D7   7 7
No Yes Plasmodium vivax SaI-1 7.0   6 6
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   7 7
No Yes Plasmodium chabaudi   7 7
No Yes Plasmodium berghei ANKA   7 7
No Yes Naegleria gruberi   7 7
No Yes Trichomonas vaginalis   132 132
No Yes Guillardia theta CCMP2712 v1.0   29 28
No Yes Emiliania huxleyi CCMP1516   33 25
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Western clawed frog 83 65
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 58 41
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 33 23
No Yes Ascaris suum Victoria/Ghent Pig roundworm 25 17
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 37 27
No Yes Cryptococcus neoformans var. grubii H99   15 11
No Yes Cryptococcus neoformans B-3501A   15 11
No Yes Cryptococcus neoformans JEC21   14 10
No Yes Ajellomyces dermatitidis ER-3   12 9
No Yes Histoplasma capsulatum H143   9 7
No Yes Histoplasma capsulatum H88   12 9
No Yes Histoplasma capsulatum G186AR   13 10
No Yes Paracoccidioides brasiliensis Pb01   10 7
No Yes Paracoccidioides brasiliensis Pb03   10 7
No Yes Coccidioides posadasii str. Silveira   10 7
No Yes Coccidioides immitis RMSCC 3703   9 7
No Yes Coccidioides immitis RMSCC 2394   11 8
No Yes Coccidioides immitis H538.4   11 8
No Yes Aspergillus fumigatus A1163   9 7
No Yes Candida albicans WO-1   12 9
No Yes Saccharomyces cerevisiae UC5   15 10
No Yes Saccharomyces cerevisiae PW5   14 9
No Yes Saccharomyces cerevisiae FL100   7 5
No Yes Saccharomyces cerevisiae CLIB324   2 2
No Yes Saccharomyces cerevisiae CBS7960   15 10
No Yes Saccharomyces cerevisiae YJM269   13 8
No Yes Saccharomyces cerevisiae T7   15 10
No Yes Saccharomyces cerevisiae FostersB   10 8
No Yes Saccharomyces cerevisiae FostersO   8 6
No Yes Saccharomyces cerevisiae VL3   9 6
No Yes Saccharomyces cerevisiae Vin13   8 5
No Yes Saccharomyces cerevisiae LalvinQA23   9 6
No Yes Saccharomyces cerevisiae AWRI796   10 7
No Yes Saccharomyces cerevisiae Sigma1278b   15 10
No Yes Saccharomyces cerevisiae W303   14 9
No Yes Saccharomyces cerevisiae JAY291   15 10
No Yes Saccharomyces cerevisiae AWRI1631   10 7
No Yes Saccharomyces cerevisiae YPS163   2 1
No Yes Saccharomyces cerevisiae CLIB215   13 8
No Yes Saccharomyces cerevisiae Y10   9 6
No Yes Saccharomyces cerevisiae YJM789   14 9
No Yes Saccharomyces cerevisiae YJM789   14 9
No Yes Saccharomyces cerevisiae RM11-1a   15 10
No Yes Saccharomyces cerevisiae RM11-1a   15 10
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 15 10
No Yes Schizosaccharomyces pombe 972h-   14 10
No Yes Batrachochytrium dendrobatidis JEL423   12 11
No Yes Batrachochytrium dendrobatidis JAM81   12 11
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 25 25
No Yes Hordeum vulgare 22 Domesticated barley 52 52
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 25 24
No Yes Trypanosoma brucei Lister 427 v4.1   7 6
No Yes Neospora caninum Nc-Liverpool 6.2   13 12
No Yes Plasmodium falciparum HB3   8 8
No Yes Plasmodium falciparum Dd2   6 6
No Yes Homo sapiens (NCBI version) Human 121 84
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 52 39
No Yes Heliconius numata (Incomplete geno)   6 5
No Yes Loa loa v3.3 (Request) Eye worm 23 16
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 24 19
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 29 19
No Yes Moniliophthora perniciosa FA553 (Genome survey)   7 7
No Yes Encephalitozoon intestinalis (endoparasite)   6 5
No Yes Encephalitozoon cuniculi (endoparasite)   5 4
No Yes Lotus japonicus (Early assembly)   20 20
No Yes Malus x domestica (Duplicate) Apple 59 59
No Yes Ricinus communis (Early assembly) Castor bean 29 29
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   63 61
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 24 24
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 25 25
No Yes Phoenix dactylifera (Early draft) Date palm 24 20
No Yes Homo sapiens 69_37 Human 74 54
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 49 36
No Yes Gorilla gorilla 69_3.1 Western gorilla 55 42
No Yes Pongo abelii 69_2 Sumatran orangutan 53 39
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 56 41
No Yes Macaca mulatta 69_1 Rhesus monkey 50 37
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 61 44
No Yes Otolemur garnettii 69_3 Small-eared galago 51 38
No Yes Microcebus murinus 69_1 Gray mouse lemur 47 36
No Yes Tarsius syrichta 69_1 Philippine tarsier 40 30
No Yes Rattus norvegicus 69_3.4 Norway rat 51 38
No Yes Mus musculus 69_38 House mouse 53 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 44 34
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 44 32
No Yes Cavia porcellus 69_3 Domestic guinea pig 48 36
No Yes Oryctolagus cuniculus 69_2 Rabbit 51 38
No Yes Ochotona princeps 69 American pika 44 32
No Yes Tupaia belangeri 69 Northern tree shrew 37 28
No Yes Sus scrofa 69_10.2 Pig 38 32
No Yes Bos taurus 69_3.1 Cattle 53 38
No Yes Vicugna pacos 69_1 Alpaca 39 29
No Yes Tursiops truncatus 69_1 Bottlenosed dolphin 50 36
No Yes Mustela putorius furo 69_1.0 Domestic ferret 53 40
No Yes Ailuropoda melanoleuca 69_1 Giant panda 51 38
No Yes Canis familiaris 69_3.1 Dog 71 50
No Yes Felis catus 69 Domestic cat 39 30
No Yes Equus caballus 69_2 Horse 54 40
No Yes Myotis lucifugus 69_2.0 Little brown bat 58 43
No Yes Pteropus vampyrus 69_1 Large flying fox 51 38
No Yes Sorex araneus 69_1 European shrew 40 28
No Yes Erinaceus europaeus 69 Western European hedgehog 40 30
No Yes Procavia capensis 69_1 Cape rock hyrax 45 33
No Yes Loxodonta africana 69_3 African savanna elephant 51 38
No Yes Echinops telfairi 69 Small Madagascar hedgehog 43 33
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 37 27
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 35 26
No Yes Macropus eugenii 69_1.0 Tammar wallaby 42 32
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 50 36
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 50 36
No Yes Ornithorhynchus anatinus 69_5 Platypus 44 36
No Yes Petromyzon marinus 69_7.0 Sea lamprey 24 17
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 46 34
No Yes Meleagris gallopavo 69_2 Turkey 48 35
No Yes Gallus gallus 69_2 Chicken 47 34
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 44 33
No Yes Anolis carolinensis 69_2.0 Green anole 46 32
No Yes Xenopus tropicalis 69_4.2 Western clawed frog 49 36
No Yes Latimeria chalumnae 69_1 Coelacanth 46 36
No Yes Gadus morhua 69_1 Atlantic cod 64 49
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 67 46
No Yes Takifugu rubripes 69_4 Torafugu 67 46
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 65 50
No Yes Oryzias latipes 69_1 Japanese medaka 64 48
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 68 50
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 77 55
No Yes Danio rerio 69_9 Zebrafish 67 49
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 21 15
No Yes Ciona intestinalis 69 Vase tunicate 23 19
No Yes Drosophila melanogaster 69_5 Fruit fly 29 20
No Yes Caenorhabditis elegans 69_215 Roundworm 23 15
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 15 10
No Yes Arabidopsis thaliana 10 Thale cress 28 28
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   532 517
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   3141 2441
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2014_06   14142 10963
No Yes Global Ocean Sampling Expedition (GOS)   96 86
No Yes PDB chains (SCOP 1.75) (PDB)   8 7
No Yes Protein Data Bank (all PDB sequenc)   322 312
No Yes TargetDB (Targets)   94 77

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