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HLH, helix-loop-helix DNA-binding domain superfamily domain assignments
in
Echinococcus granulosus

Assignment details

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Echinococcus granulosus has 31 significant domains in 31 proteins.

     

Sequence ID   Evalue   Region   Family  
EgrG_000098000.1   0.0000000000000903   38-104   HLH, helix-loop-helix DNA-binding domain  
EgrG_000114800.1   0.00000119   30-104   HLH, helix-loop-helix DNA-binding domain  
EgrG_000253500.1   0.000000000000262   218-277   HLH, helix-loop-helix DNA-binding domain  
EgrG_000260700.1   0.0000016   90-159   HLH, helix-loop-helix DNA-binding domain  
EgrG_000260800.1   0.00000189   74-142   HLH, helix-loop-helix DNA-binding domain  
EgrG_000344700.1   1.83e-18   126-197   HLH, helix-loop-helix DNA-binding domain  
EgrG_000365400.1   0.00000000000183   530-608   HLH, helix-loop-helix DNA-binding domain  
EgrG_000434100.1   0.000000301   47-89   HLH, helix-loop-helix DNA-binding domain  
EgrG_000451500.1   0.0000000000000864   65-145   HLH, helix-loop-helix DNA-binding domain  
EgrG_000451950.1   2.36e-16   103-180   HLH, helix-loop-helix DNA-binding domain  
EgrG_000457300.1   0.000000017   19-69   HLH, helix-loop-helix DNA-binding domain  
EgrG_000532200.1   0.00000000000432   16-71   HLH, helix-loop-helix DNA-binding domain  
EgrG_000603700.1   0.00000000000000119   78-134   HLH, helix-loop-helix DNA-binding domain  
EgrG_000624300.1   0.00000000000000183   50-111   HLH, helix-loop-helix DNA-binding domain  
EgrG_000627500.1   0.000000000000628   70-123   HLH, helix-loop-helix DNA-binding domain  
EgrG_000663800.1   4.06e-18   123-193   HLH, helix-loop-helix DNA-binding domain  
EgrG_000768400.1   0.0000000000000017   43-115   HLH, helix-loop-helix DNA-binding domain  
EgrG_000774700.1   0.000000000000327   300-360   HLH, helix-loop-helix DNA-binding domain  
EgrG_000805200.1   0.00000051   1-67   HLH, helix-loop-helix DNA-binding domain  
EgrG_000895500.1   0.0000000000798   48-126   HLH, helix-loop-helix DNA-binding domain  
EgrG_000913200.1   5.89e-17   73-144   HLH, helix-loop-helix DNA-binding domain  
EgrG_000967400.1   0.000000000000249   67-145   HLH, helix-loop-helix DNA-binding domain  
EgrG_000988300.1   0.00000343   705-730,757-804   HLH, helix-loop-helix DNA-binding domain  
EgrG_000995700.1   0.00000000000209   465-532   HLH, helix-loop-helix DNA-binding domain  
EgrG_000998300.1   1.57e-16   122-183   HLH, helix-loop-helix DNA-binding domain  
EgrG_001013600.1   0.00000000000000288   183-257   HLH, helix-loop-helix DNA-binding domain  
EgrG_001014600.1   0.000016   24-61   HLH, helix-loop-helix DNA-binding domain  
EgrG_001041200.1   0.000000000000209   30-86   HLH, helix-loop-helix DNA-binding domain  
EgrG_001053100.1   4.32e-16   360-424   HLH, helix-loop-helix DNA-binding domain  
EgrG_001160400.1   0.0000465   43-108   HLH, helix-loop-helix DNA-binding domain  
EgrG_002050900.1   0.000000233   36-116   HLH, helix-loop-helix DNA-binding domain  
 
Weak hits:
EgrG_000435700.1   0.0294   202-232   HLH, helix-loop-helix DNA-binding domain  
EgrG_000553400.1   0.0243   31-93   HLH, helix-loop-helix DNA-binding domain  
EgrG_001176300.1   0.00013   16-67   HLH, helix-loop-helix DNA-binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   200660 200660
No Yes Homo sapiens 76_38 Human 330 330
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 105 105
No Yes Gorilla gorilla 76_3.1 Western gorilla 140 140
No Yes Pongo abelii 76_2 Sumatran orangutan 96 96
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 101 101
No Yes Papio anubis 76 Olive baboon 115 115
No Yes Macaca mulatta 76_1 Rhesus monkey 151 151
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 195 195
No Yes Otolemur garnettii 76_3 Small-eared galago 111 111
No Yes Microcebus murinus 76_1 Gray mouse lemur 66 66
No Yes Rattus norvegicus 76_5.0 Norway rat 123 123
No Yes Mus musculus 76_38 House mouse 209 209
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 67 67
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 110 110
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 89 88
No Yes Cavia porcellus 76_3 Domestic guinea pig 103 103
No Yes Oryctolagus cuniculus 76_2 Rabbit 89 89
No Yes Ochotona princeps 76 American pika 68 68
No Yes Tupaia belangeri 76 Northern tree shrew 49 49
No Yes Sus scrofa 76_10.2 Pig 115 115
No Yes Bos taurus 76_3.1 Cattle 110 110
No Yes Ovis aries 76_3.1 Sheep 102 102
No Yes Vicugna pacos 76_1 Alpaca 39 39
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 87 87
No Yes Mustela putorius furo 76_1.0 Domestic ferret 94 94
No Yes Ailuropoda melanoleuca 76_1 Giant panda 106 106
No Yes Canis familiaris 76_3.1 Dog 122 122
No Yes Felis catus 76_6.2 Domestic cat 88 88
No Yes Equus caballus 76_2 Horse 90 90
No Yes Myotis lucifugus 76_2.0 Little brown bat 83 83
No Yes Pteropus vampyrus 76_1 Large flying fox 86 86
No Yes Sorex araneus 76_1 European shrew 43 43
No Yes Erinaceus europaeus 76 Western European hedgehog 55 55
No Yes Procavia capensis 76_1 Cape rock hyrax 71 71
No Yes Loxodonta africana 76_3 African savanna elephant 128 128
No Yes Echinops telfairi 76 Small Madagascar hedgehog 58 58
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 114 114
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 38 38
No Yes Macropus eugenii 76_1.0 Tammar wallaby 77 77
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 103 103
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 110 110
No Yes Ornithorhynchus anatinus 76_5 Platypus 85 85
No Yes Saccoglossus kowalevskii v3.0   115 115
No Yes Petromyzon marinus 76_7.0 Sea lamprey 54 54
No Yes Meleagris gallopavo 76_2 Turkey 85 85
No Yes Gallus gallus 76_4 Chicken 86 86
No Yes Anas platyrhynchos 76_1.0 Mallard 67 67
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 88 88
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 84 84
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 93 93
No Yes Anolis carolinensis 76_2.0 Green anole 93 93
No Yes Xenopus laevis African clawed frog 382 382
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 131 131
No Yes Latimeria chalumnae 76_1 Coelacanth 133 133
No Yes Lepisosteus oculatus 76 Spotted gar 141 140
No Yes Gadus morhua 76_1 Atlantic cod 145 145
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 144 144
No Yes Takifugu rubripes 76_4 Torafugu 324 324
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 160 160
No Yes Oryzias latipes 76_1 Japanese medaka 143 143
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 133 133
No Yes Poecilia formosa 76 Amazon molly 144 144
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 161 161
No Yes Astyanax mexicanus 76 Mexican tetra 140 140
No Yes Danio rerio 76_9 Zebrafish 219 219
No Yes Oikopleura dioica   26 26
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 49 49
No Yes Ciona intestinalis 76 Vase tunicate 43 43
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 59 59
No Yes Adineta vaga   88 88
No Yes Octopus bimaculoides 280   62 62
No Yes Crassostrea gigas 22 Pacific oyster 79 77
No Yes Lottia gigantea Owl limpet 82 82
No Yes Helobdella robusta   71 71
No Yes Capitella sp. I   84 84
No Yes Danaus plexippus OGS1.0 Monarch butterfly 53 50
No Yes Heliconius melpomene Postman butterfly 42 41
No Yes Bombyx mori Domestic silkworm 39 36
No Yes Nasonia vitripennis Jewel wasp 33 33
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 85 85
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 54 54
No Yes Linepithema humile v1.1 Argentine ant 55 55
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 48 48
No Yes Solenopsis invicta v.2.2.3 Red fire ant 39 39
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 51 51
No Yes Atta cephalotes v1.1   49 49
No Yes Camponotus floridanus v3.3 Florida carpenter ant 48 48
No Yes Lucilia cuprina Australian sheep blowfly 55 53
No Yes Drosophila grimshawi 1.3   56 56
No Yes Drosophila willistoni 1.3   55 55
No Yes Drosophila pseudoobscura 2.13   57 57
No Yes Drosophila persimilis 1.3   52 52
No Yes Drosophila suzukii   55 51
No Yes Drosophila yakuba 1.3   56 56
No Yes Drosophila simulans 1.3   55 54
No Yes Drosophila sechellia 1.3   53 53
No Yes Drosophila melanogaster 76_5 Fruit fly 114 114
No Yes Drosophila erecta 1.3   55 55
No Yes Drosophila ananassae 1.3   56 56
No Yes Drosophila virilis 1.2   56 56
No Yes Drosophila mojavensis 1.3   56 56
No Yes Megaselia scalaris 22   27 27
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 61 61
No Yes Culex pipiens quinquefasciatus Southern house mosquito 59 57
No Yes Anopheles darlingi 22 American malaria mosquito 40 40
No Yes Anopheles gambiae 49_3j African malaria mosquito 47 47
No Yes Tribolium castaneum 3.0 Red flour beetle 51 51
No Yes Pediculus humanus corporis (Early assembly) Human body louse 51 51
No Yes Acyrthosiphon pisum Pea aphid 43 43
No Yes Rhodnius prolixus 22   42 42
No Yes Daphnia pulex Common water flea 52 52
No Yes Strigamia maritima 22   59 59
No Yes Sarcoptes scabiei   23 23
No Yes Tetranychus urticae Two-spotted spider mite 50 50
No Yes Ixodes scapularis (Preliminary) Black-legged tick 47 47
No Yes Pristionchus pacificus   21 20
No Yes Meloidogyne incognita Southern root-knot nematode 32 32
No Yes Meloidogyne hapla   16 16
No Yes Onchocerca volvulus 22   33 33
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 52 52
No Yes Caenorhabditis japonica   31 31
No Yes Caenorhabditis brenneri   58 53
No Yes Caenorhabditis remanei   60 57
No Yes Caenorhabditis elegans 76_235 Roundworm 60 57
No Yes Caenorhabditis briggsae 2   42 41
No Yes Trichinella spiralis 22   32 32
No Yes Hymenolepis microstoma   34 34
No Yes Echinococcus multilocularis   35 35
No Yes Echinococcus granulosus   31 31
No Yes Taenia solium Pork tapeworm 34 33
No Yes Schistosoma mansoni   40 40
No Yes Mnemiopsis leidyi Sea walnut 22 22
No Yes Thelohanellus kitauei   4 4
No Yes Acropora digitifera v1.0   51 51
No Yes Nematostella vectensis 1.0 Starlet sea anemone 75 75
No Yes Hydra vulgaris   22 22
No Yes Amphimedon queenslandica   20 20
No Yes Trichoplax adhaerens   27 27
No Yes Proterospongia sp. ATCC 50818   5 5
No Yes Monosiga brevicollis   14 14
No Yes Sphaeroforma arctica JP610   36 35
No Yes Capsaspora owczarzaki ATCC 30864   33 33
No Yes Conidiobolus coronatus NRRL28638 v1.0   12 12
No Yes Mortierella verticillata NRRL 6337   26 26
No Yes Phycomyces blakesleeanus   38 38
No Yes Rhizopus oryzae RA 99-880   53 53
No Yes Mucor circinelloides   43 43
No Yes Rhizomucor miehei CAU432   32 32
No Yes Malassezia globosa CBS 7966   14 14
No Yes Sporisorium reilianum 22   12 12
No Yes Ustilago maydis   12 12
No Yes Mixia osmundae IAM 14324 v1.0   9 9
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   7 7
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   7 7
No Yes Melampsora laricis-populina   7 7
No Yes Rhodotorula graminis WP1 v1.0   7 7
No Yes Sporobolomyces roseus IAM 13481   3 3
No Yes Microbotryum violaceum 22   9 9
No Yes Wallemia sebi v1.0   7 7
No Yes Sphaerobolus stellatus v1.0   13 13
No Yes Piloderma croceum F 1598 v1.0   10 10
No Yes Serpula lacrymans var. lacrymans S7.9   9 9
No Yes Coniophora puteana   10 10
No Yes Hydnomerulius pinastri v2.0   13 13
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   11 11
No Yes Pisolithus microcarpus 441 v1.0   16 16
No Yes Pisolithus tinctorius Marx 270 v1.0   16 16
No Yes Scleroderma citrinum Foug A v1.0   15 15
No Yes Coprinopsis cinerea okayama7 130 v3   10 10
No Yes Pleurotus ostreatus Oyster mushroom 10 10
No Yes Amanita thiersii Skay4041 v1.0   10 10
No Yes Amanita muscaria Koide v1.0 Fly agaric 14 14
No Yes Galerina marginata v1.0   11 11
No Yes Hebeloma cylindrosporum h7 v2.0   12 12
No Yes Laccaria bicolor S238N-H82   20 20
No Yes Agaricus bisporus var. bisporus   9 9
No Yes Schizophyllum commune   11 11
No Yes Stereum hirsutum FP-91666 SS1 v1.0   12 12
No Yes Heterobasidion annosum   8 8
No Yes Gloeophyllum trabeumv1.0   12 12
No Yes Punctularia strigosozonata v1.0   11 11
No Yes Sebacina vermifera MAFF 305830 v1.0   11 11
No Yes Fomitiporia mediterranea v1.0   12 12
No Yes Tulasnella calospora AL13/4D v1.0   10 10
No Yes Postia placenta   16 16
No Yes Wolfiporia cocos MD-104 SS10 v1.0   11 11
No Yes Fomitopsis pinicolav1.0   19 19
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   16 16
No Yes Phanerochaete chrysosporium RP-78 2.1   11 11
No Yes Dichomitus squalens   10 10
No Yes Trametes versicolor v1.0   11 11
No Yes Tremella mesenterica Witches' butter 9 9
No Yes Daldinia eschscholzii EC12 v1.0   10 10
No Yes Apiospora montagnei NRRL 25634 v1.0   13 13
No Yes Magnaporthe poae ATCC 64411 22   9 9
No Yes Magnaporthe grisea 70-15   10 10
No Yes Podospora anserina   16 16
No Yes Sporotrichum thermophile ATCC 42464   12 12
No Yes Thielavia terrestris NRRL 8126   13 13
No Yes Chaetomium globosum CBS 148.51   11 11
No Yes Neurospora tetrasperma   14 14
No Yes Neurospora discreta FGSC 8579   14 14
No Yes Neurospora crassa OR74A   15 15
No Yes Cryphonectria parasitica Chestnut blight fungus 10 10
No Yes Verticillium albo-atrum VaMs.102   6 6
No Yes Verticillium dahliae VdLs.17   12 12
No Yes Acremonium alcalophilumv 1.0   9 9
No Yes Glomerella graminicola 22   11 11
No Yes Fusarium graminearum   16 16
No Yes Nectria haematococca mpVI   12 12
No Yes Fusarium oxysporum f. sp. lycopersici 4286   58 58
No Yes Fusarium verticillioides 7600   15 15
No Yes Trichoderma asperellum CBS 433.97 v1.0   12 12
No Yes Trichoderma atroviride   10 10
No Yes Trichoderma citrinoviride v1.0   9 9
No Yes Trichoderma reesei 1.2   9 9
No Yes Trichoderma virens Gv29-8   9 9
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   10 10
No Yes Trichoderma harzianum CBS 226.95 v1.0   11 11
No Yes Amorphotheca resinae v1.0 Creosote fungus 10 10
No Yes Botrytis cinerea B05.10   9 9
No Yes Sclerotinia sclerotiorum   9 9
No Yes Blumeria graminis 22   7 7
No Yes Didymella exigua CBS 183.55 v1.0   14 14
No Yes Leptosphaeria maculans 22   9 9
No Yes Setosphaeria turcica v1.0   14 14
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   15 15
No Yes Cochliobolus victoriae FI3 v1.0   15 15
No Yes Cochliobolus carbonum 26-R-13 v1.0   13 13
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 12 12
No Yes Alternaria brassicicola   11 11
No Yes Cochliobolus lunatus m118 v2.0   14 14
No Yes Pyrenophora teres f. teres 22   12 12
No Yes Pyrenophora tritici-repentis   11 11
No Yes Stagonospora nodorum   12 12
No Yes Mycosphaerella graminicola IPO323   9 9
No Yes Zasmidium cellare ATCC 36951 v1.0   14 14
No Yes Dothistroma septosporum   14 14
No Yes Septoria musiva v1.0   13 13
No Yes Mycosphaerella fijiensis CIRAD86   12 12
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   15 15
No Yes Paracoccidioides brasiliensis Pb18   6 6
No Yes Coccidioides posadasii RMSCC 3488   8 8
No Yes Coccidioides immitis RS   8 8
No Yes Ajellomyces dermatitidis SLH14081   8 8
No Yes Histoplasma capsulatum class NAmI strain WU24   5 5
No Yes Microsporum canis CBS 113480   8 8
No Yes Trichophyton equinum CBS 127.97   5 5
No Yes Trichophyton verrucosum HKI 0517   8 8
No Yes Arthroderma benhamiae CBS 112371   8 8
No Yes Trichophyton tonsurans CBS 112818   7 7
No Yes Trichophyton rubrum CBS 118892   8 8
No Yes Uncinocarpus reesii 1704   7 7
No Yes Aspergillus zonatus v1.0   11 11
No Yes Penicillium chrysogenum Wisconsin 54-1255   10 10
No Yes Penicillium chrysogenum v1.0   10 10
No Yes Aspergillus acidus v1.0   9 9
No Yes Aspergillus fumigatus Af293   9 9
No Yes Aspergillus brasiliensis v1.0   9 9
No Yes Aspergillus nidulans FGSC A4   13 13
No Yes Aspergillus sydowii v1.0   14 14
No Yes Aspergillus versicolor v1.0   15 15
No Yes Aspergillus glaucus   9 9
No Yes Aspergillus carbonarius ITEM 5010   9 9
No Yes Neosartorya fischeri NRRL 181   10 10
No Yes Aspergillus terreus NIH2624   10 10
No Yes Aspergillus tubingensis v1.0   9 9
No Yes Aspergillus wentii v1.0   10 10
No Yes Aspergillus oryzae RIB40   10 10
No Yes Aspergillus niger 22   9 9
No Yes Aspergillus niger ATCC 1015   5 5
No Yes Aspergillus flavus NRRL3357   12 12
No Yes Aspergillus clavatus NRRL 1   9 9
No Yes Penicillium marneffei ATCC 18224   10 10
No Yes Tuber melanosporum Mel28 22   8 8
No Yes Tuber melanosporum Vittad Perigord truffle 8 8
No Yes Hansenula polymorpha v2.0   9 9
No Yes Dekkera bruxellensis CBS 2499 v2.0   10 10
No Yes Pichia membranifaciensv1.0   9 9
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   9 9
No Yes Candida dubliniensis CD36   9 9
No Yes Candida tropicalis MYA-3404   7 7
No Yes Candida parapsilosis   7 7
No Yes Candida albicans SC5314   9 9
No Yes Lodderomyces elongisporus NRRL YB-4239   7 7
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   10 10
No Yes Pichia stipitis CBS 6054   8 8
No Yes Candida guilliermondii ATCC 6260   8 8
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   9 9
No Yes Debaromyces hansenii   8 8
No Yes Wickerhamomyces anomalus   10 10
No Yes Pichia pastoris GS115   10 10
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   6 6
No Yes Yarrowia lipolytica CLIB122   9 9
No Yes Candida lusitaniae ATCC 42720   8 8
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   7 7
No Yes Vanderwaltozyma polyspora DSM 70294   9 9
No Yes Candida glabrata CBS138   9 9
No Yes Kluyveromyces thermotolerans CBS 6340   8 8
No Yes Lachancea kluyveri   9 9
No Yes Kluyveromyces waltii   8 8
No Yes Ashbya gossypii ATCC 10895   8 8
No Yes Zygosaccharomyces rouxii   8 8
No Yes Saccharomyces mikatae MIT   8 8
No Yes Saccharomyces paradoxus MIT   8 8
No Yes Saccharomyces cerevisiae 76 Baker's yeast 8 8
No Yes Saccharomyces bayanus MIT   7 7
No Yes Kluyveromyces lactis   9 9
No Yes Schizosaccharomyces cryophilus OY26 22   3 3
No Yes Schizosaccharomyces octosporus yFS286   3 3
No Yes Schizosaccharomyces japonicus yFS275   4 4
No Yes Schizosaccharomyces pombe Fission yeast 4 4
No Yes Catenaria anguillulae PL171 v1.0   14 14
No Yes Allomyces macrogynus ATCC 38327   25 25
No Yes Spizellomyces punctatus DAOM BR117   12 12
No Yes Selaginella moellendorffii   95 94
No Yes Pinus taeda Loblolly pine 185 183
No Yes Picea abies Norway spruce 134 132
No Yes Eucalyptus grandis v201 Rose gum 187 187
No Yes Theobroma cacao B97-61/B2 v1 Cacao 133 133
No Yes Gossypium raimondii v221   459 459
No Yes Citrus clementina v165   173 173
No Yes Citrus sinensis v154 Sweet orange 206 206
No Yes Thellungiella halophila v173   181 181
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 278 277
No Yes Capsella rubella v183   172 172
No Yes Arabidopsis lyrata Lyrate rockcress 164 161
No Yes Arabidopsis thaliana 10 Thale cress 238 238
No Yes Carica papaya Papaya 111 111
No Yes Medicago truncatula Barrel medic 267 267
No Yes Phaseolus vulgaris v186 French bean 207 207
No Yes Glycine max v109 Soybean 414 414
No Yes Cucumis sativus v122 Cucumber 207 207
No Yes Fragaria vesca Wild strawberry 120 119
No Yes Malus domestica v196 Apple 275 273
No Yes Prunus persica v139 Peach 137 137
No Yes Linum usitatissimum v200 Flax 201 201
No Yes Manihot esculenta v147 Cassava 212 212
No Yes Populus trichocarpa v156 Black cottonwood 243 243
No Yes Vitis vinifera Wine grape 123 123
No Yes Mimulus guttatus v140 Spotted monkey flower 144 144
No Yes Solanum lycopersicum v.2.3 Tomato 172 172
No Yes Solanum tuberosum Potato 229 229
No Yes Actinidia chinensis Hongyang   197 196
No Yes Aquilegia coerulea v195   188 188
No Yes Triticum urartu 22   118 118
No Yes Triticum aestivum 22 Bread wheat 346 346
No Yes Aegilops tauschii 22   148 148
No Yes Brachypodium distachyon Stiff brome 172 172
No Yes Oryza barthii 22 African wild rice 196 193
No Yes Oryza meridionalis 22   177 174
No Yes Oryza glumaepatula 22   227 226
No Yes Oryza glaberrima African rice 154 154
No Yes Oryza punctata 22   213 211
No Yes Oryza nivara 22   220 220
No Yes Oryza brachyantha 22 Malo sina 154 153
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 241 241
No Yes Oryza sativa v193 Rice 239 239
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 182 181
No Yes Panicum virgatum v202 Switchgrass 328 328
No Yes Setaria italica v164 Foxtail millet 211 211
No Yes Zea mays subsp. mays Maize 326 326
No Yes Zea mays v181 Maize 347 347
No Yes Sorghum bicolor Sorghum 172 172
No Yes Musa balbisiana Balbis banana 322 319
No Yes Musa acuminata 22 Wild Malaysian banana 321 321
No Yes Amborella trichopoda 22   86 86
No Yes Physcomitrella patens   108 108
No Yes Coccomyxa subellipsoidea sp. C-169 v2   6 6
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella variabilis sp. NC64A   2 2
No Yes Chlorella vulgaris   6 6
No Yes Volvox carteri f. nagariensis   3 3
No Yes Volvox carteri v199   4 4
No Yes Chlamydomonas reinhardtii 4.0   8 8
No Yes Ostreococcus sp. RCC809   4 4
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   1 1
No Yes Micromonas sp. RCC299   2 2
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Porphyridium purpureum 02_2012   3 3
No Yes Thecamonas trahens ATCC 50062   8 8
No Yes Bigelowiella natans CCMP2755 22   5 5
No Yes Cyanophora paradoxa   7 7
No Yes Ectocarpus siliculosus   3 3
No Yes Albugo laibachii 22   4 4
No Yes Pythium iwayamai DAOM BR242034 22   3 3
No Yes Pythium arrhenomanes ATCC 12531 22   4 4
No Yes Pythium ultimum v1.7-2   4 4
No Yes Pythium aphanidermatum DAOM BR444 22   4 4
No Yes Pythium irregulare DAOM BR486 22   5 5
No Yes Pythium vexans DAOM BR484 22   5 5
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 6 6
No Yes Phytophthora sojae 1.1   6 6
No Yes Phytophthora infestans T30-4   7 7
No Yes Phytophthora capsici   5 5
No Yes Hyaloperonospora arabidopsidis 22   5 5
No Yes Phaeodactylum tricornutumCCAP 1055/1   4 4
No Yes Fragilariopsis cylindrus   5 5
No Yes Thalassiosira pseudonana CCMP1335   5 5
No Yes Guillardia theta CCMP2712 v1.0   16 13
No Yes Helicobacter mustelae 12198   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 247 247
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 90 90
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 51 51
No Yes Ascaris suum Victoria/Ghent Pig roundworm 34 34
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 55 52
No Yes Cryptococcus neoformans var. grubii H99   9 9
No Yes Cryptococcus neoformans B-3501A   8 8
No Yes Cryptococcus neoformans JEC21   8 8
No Yes Paracoccidioides brasiliensis Pb01   7 7
No Yes Paracoccidioides brasiliensis Pb03   7 7
No Yes Coccidioides posadasii str. Silveira   8 8
No Yes Coccidioides immitis RMSCC 3703   6 6
No Yes Coccidioides immitis RMSCC 2394   8 8
No Yes Coccidioides immitis H538.4   8 8
No Yes Ajellomyces dermatitidis ER-3   8 8
No Yes Histoplasma capsulatum H143   6 6
No Yes Histoplasma capsulatum H88   8 8
No Yes Histoplasma capsulatum G186AR   7 7
No Yes Aspergillus fumigatus A1163   9 9
No Yes Candida albicans WO-1   7 7
No Yes Saccharomyces cerevisiae UC5   8 8
No Yes Saccharomyces cerevisiae PW5   8 8
No Yes Saccharomyces cerevisiae FL100   6 6
No Yes Saccharomyces cerevisiae CLIB382   1 1
No Yes Saccharomyces cerevisiae CLIB324   5 5
No Yes Saccharomyces cerevisiae CBS7960   8 8
No Yes Saccharomyces cerevisiae YJM269   7 7
No Yes Saccharomyces cerevisiae T7   8 8
No Yes Saccharomyces cerevisiae FostersB   8 8
No Yes Saccharomyces cerevisiae FostersO   7 7
No Yes Saccharomyces cerevisiae VL3   8 8
No Yes Saccharomyces cerevisiae Vin13   7 7
No Yes Saccharomyces cerevisiae LalvinQA23   6 6
No Yes Saccharomyces cerevisiae AWRI796   7 7
No Yes Saccharomyces cerevisiae Sigma1278b   8 8
No Yes Saccharomyces cerevisiae W303   8 8
No Yes Saccharomyces cerevisiae JAY291   8 8
No Yes Saccharomyces cerevisiae AWRI1631   6 6
No Yes Saccharomyces cerevisiae YPS163   4 4
No Yes Saccharomyces cerevisiae M22   2 2
No Yes Saccharomyces cerevisiae T73   3 3
No Yes Saccharomyces cerevisiae CLIB215   5 5
No Yes Saccharomyces cerevisiae Y10   4 4
No Yes Saccharomyces cerevisiae YJM789   8 8
No Yes Saccharomyces cerevisiae YJM789   8 8
No Yes Saccharomyces cerevisiae RM11-1a   8 8
No Yes Saccharomyces cerevisiae RM11-1a   7 7
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 8 8
No Yes Schizosaccharomyces pombe 972h-   4 4
No Yes Batrachochytrium dendrobatidis JEL423   10 10
No Yes Batrachochytrium dendrobatidis JAM81   10 10
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 126 126
No Yes Hordeum vulgare 22 Domesticated barley 303 303
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 182 182
No Yes Coxiella burnetii CbuK_Q154   1 1
No Yes Coxiella burnetii CbuG_Q212   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 344 344
No Yes Homo sapiens (NCBI version) Human 171 171
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 109 109
No Yes Heliconius numata (Incomplete)   5 5
No Yes Loa loa v3.3 (Request) Eye worm 34 34
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 30 30
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 33 33
No Yes Moniliophthora perniciosa FA553 (Genome survey)   8 8
No Yes Picea sitchensis (Incomplete) Sitka spruce 13 13
No Yes Lotus japonicus (Early assembly)   123 123
No Yes Malus x domestica (Duplicate) Apple 275 273
No Yes Ricinus communis (Early assembly) Castor bean 129 129
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   286 282
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 171 171
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 172 172
No Yes Phoenix dactylifera (Early draft) Date palm 82 82
No Yes Homo sapiens 69_37 Human 115 115
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 100 100
No Yes Gorilla gorilla 69_3.1 Western gorilla 102 102
No Yes Pongo abelii 69_2 Sumatran orangutan 96 96
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 96 96
No Yes Macaca mulatta 69_1 Rhesus monkey 103 103
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 101 101
No Yes Otolemur garnettii 69_3 Small-eared galago 109 109
No Yes Microcebus murinus 69_1 Gray mouse lemur 66 66
No Yes Rattus norvegicus 69_3.4 Norway rat 110 110
No Yes Mus musculus 69_38 House mouse 109 109
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 67 67
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 104 104
No Yes Cavia porcellus 69_3 Domestic guinea pig 98 98
No Yes Oryctolagus cuniculus 69_2 Rabbit 84 84
No Yes Ochotona princeps 69 American pika 68 68
No Yes Tupaia belangeri 69 Northern tree shrew 49 49
No Yes Sus scrofa 69_10.2 Pig 96 96
No Yes Bos taurus 69_3.1 Cattle 104 104
No Yes Vicugna pacos 69_1 Alpaca 39 39
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 87 87
No Yes Mustela putorius furo 69_1.0 Domestic ferret 93 93
No Yes Ailuropoda melanoleuca 69_1 Giant panda 97 97
No Yes Canis familiaris 69_3.1 Dog 99 99
No Yes Felis catus 69 Domestic cat 48 48
No Yes Equus caballus 69_2 Horse 83 83
No Yes Myotis lucifugus 69_2.0 Little brown bat 83 83
No Yes Pteropus vampyrus 69_1 Large flying fox 86 86
No Yes Sorex araneus 69_1 European shrew 43 43
No Yes Erinaceus europaeus 69 Western European hedgehog 55 55
No Yes Procavia capensis 69_1 Cape rock hyrax 71 71
No Yes Loxodonta africana 69_3 African savanna elephant 97 97
No Yes Echinops telfairi 69 Small Madagascar hedgehog 58 58
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 53 53
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 38 38
No Yes Macropus eugenii 69_1.0 Tammar wallaby 77 77
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 89 89
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 108 108
No Yes Ornithorhynchus anatinus 69_5 Platypus 76 76
No Yes Petromyzon marinus 69_7.0 Sea lamprey 46 46
No Yes Meleagris gallopavo 69_2 Turkey 67 67
No Yes Gallus gallus 69_2 Chicken 75 75
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 84 84
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 81 81
No Yes Anolis carolinensis 69_2.0 Green anole 89 89
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 103 103
No Yes Latimeria chalumnae 69_1 Coelacanth 114 114
No Yes Gadus morhua 69_1 Atlantic cod 135 135
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 127 127
No Yes Takifugu rubripes 69_4 Torafugu 137 137
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 136 136
No Yes Oryzias latipes 69_1 Japanese medaka 121 121
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 133 133
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 138 138
No Yes Danio rerio 69_9 Zebrafish 146 146
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 42 42
No Yes Ciona intestinalis 69 Vase tunicate 43 43
No Yes Drosophila melanogaster 69_5 Fruit fly 57 57
No Yes Caenorhabditis elegans 69_215 Roundworm 41 38
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 8 8
No Yes Arabidopsis thaliana 10 Thale cress 163 163
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   4 4
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   2 2
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   80672 80606
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   5692 5671
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   65201 65023
No Yes Global Ocean Sampling Expedition (GOS)   11 11
No Yes NCBI viral sequences (Viral)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   13 13
No Yes Protein Data Bank (all PDB sequenc)   100 100
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   175 175
No Yes TargetDB (Targets)   204 204
No Yes UniProt viral sequences (Viral)   18 18

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