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SWIB/MDM2 domain superfamily domain assignments
in
Fomitiporia mediterranea v1.0

Assignment details

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Fomitiporia mediterranea v1.0 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Fomme1|120229|estExt_Genewise1.C_4_t20306   0.00000000741   410-496   SWIB/MDM2 domain  
jgi|Fomme1|131487|fgenesh1_pm.2_#_174   5.01e-24   186-273   SWIB/MDM2 domain  
jgi|Fomme1|144195|estExt_fgenesh1_pg.C_1_t20166   1.2e-26   287-368   SWIB/MDM2 domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   29082 29082
No Yes Homo sapiens 76_38 Human 54 48
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 7 6
No Yes Gorilla gorilla 76_3.1 Western gorilla 9 8
No Yes Pongo abelii 76_2 Sumatran orangutan 7 6
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 8 7
No Yes Papio anubis 76 Olive baboon 7 6
No Yes Macaca mulatta 76_1 Rhesus monkey 20 17
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 33 29
No Yes Otolemur garnettii 76_3 Small-eared galago 10 8
No Yes Microcebus murinus 76_1 Gray mouse lemur 5 5
No Yes Rattus norvegicus 76_5.0 Norway rat 7 6
No Yes Mus musculus 76_38 House mouse 22 20
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 7 6
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 8 6
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 8 7
No Yes Cavia porcellus 76_3 Domestic guinea pig 7 6
No Yes Oryctolagus cuniculus 76_2 Rabbit 10 8
No Yes Ochotona princeps 76 American pika 7 6
No Yes Tupaia belangeri 76 Northern tree shrew 4 4
No Yes Sus scrofa 76_10.2 Pig 7 6
No Yes Bos taurus 76_3.1 Cattle 7 6
No Yes Ovis aries 76_3.1 Sheep 12 10
No Yes Vicugna pacos 76_1 Alpaca 6 5
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 7 6
No Yes Mustela putorius furo 76_1.0 Domestic ferret 8 7
No Yes Ailuropoda melanoleuca 76_1 Giant panda 7 6
No Yes Canis familiaris 76_3.1 Dog 9 8
No Yes Felis catus 76_6.2 Domestic cat 7 6
No Yes Equus caballus 76_2 Horse 8 7
No Yes Myotis lucifugus 76_2.0 Little brown bat 8 7
No Yes Pteropus vampyrus 76_1 Large flying fox 7 6
No Yes Sorex araneus 76_1 European shrew 6 5
No Yes Erinaceus europaeus 76 Western European hedgehog 6 5
No Yes Procavia capensis 76_1 Cape rock hyrax 6 5
No Yes Loxodonta africana 76_3 African savanna elephant 10 9
No Yes Echinops telfairi 76 Small Madagascar hedgehog 7 6
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 16 13
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 6 5
No Yes Macropus eugenii 76_1.0 Tammar wallaby 5 5
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 11 9
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 7 6
No Yes Ornithorhynchus anatinus 76_5 Platypus 5 4
No Yes Saccoglossus kowalevskii v3.0   8 8
No Yes Petromyzon marinus 76_7.0 Sea lamprey 2 2
No Yes Meleagris gallopavo 76_2 Turkey 10 8
No Yes Gallus gallus 76_4 Chicken 7 6
No Yes Anas platyrhynchos 76_1.0 Mallard 7 6
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 4 3
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 7 6
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 11 9
No Yes Anolis carolinensis 76_2.0 Green anole 6 5
No Yes Xenopus laevis African clawed frog 25 22
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 9 7
No Yes Latimeria chalumnae 76_1 Coelacanth 10 9
No Yes Lepisosteus oculatus 76 Spotted gar 9 8
No Yes Gadus morhua 76_1 Atlantic cod 6 6
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 7 7
No Yes Takifugu rubripes 76_4 Torafugu 29 24
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 11 9
No Yes Oryzias latipes 76_1 Japanese medaka 9 8
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 7 6
No Yes Poecilia formosa 76 Amazon molly 7 6
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 8 7
No Yes Astyanax mexicanus 76 Mexican tetra 7 7
No Yes Danio rerio 76_9 Zebrafish 13 13
No Yes Oikopleura dioica   1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 4 4
No Yes Ciona intestinalis 76 Vase tunicate 3 3
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 3 3
No Yes Adineta vaga   8 8
No Yes Octopus bimaculoides 280   4 4
No Yes Crassostrea gigas 22 Pacific oyster 4 4
No Yes Lottia gigantea Owl limpet 5 5
No Yes Helobdella robusta   2 2
No Yes Capitella sp. I   4 4
No Yes Danaus plexippus OGS1.0 Monarch butterfly 3 3
No Yes Heliconius melpomene Postman butterfly 2 2
No Yes Bombyx mori Domestic silkworm 2 2
No Yes Nasonia vitripennis Jewel wasp 3 3
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 8 8
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 3 3
No Yes Linepithema humile v1.1 Argentine ant 2 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 3 3
No Yes Solenopsis invicta v.2.2.3 Red fire ant 3 3
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 3 3
No Yes Atta cephalotes v1.1   3 3
No Yes Camponotus floridanus v3.3 Florida carpenter ant 3 3
No Yes Lucilia cuprina Australian sheep blowfly 3 3
No Yes Drosophila grimshawi 1.3   4 4
No Yes Drosophila willistoni 1.3   3 3
No Yes Drosophila pseudoobscura 2.13   3 3
No Yes Drosophila persimilis 1.3   3 3
No Yes Drosophila suzukii   3 3
No Yes Drosophila yakuba 1.3   3 3
No Yes Drosophila simulans 1.3   3 3
No Yes Drosophila sechellia 1.3   3 3
No Yes Drosophila melanogaster 76_5 Fruit fly 3 3
No Yes Drosophila erecta 1.3   3 3
No Yes Drosophila ananassae 1.3   3 3
No Yes Drosophila virilis 1.2   3 3
No Yes Drosophila mojavensis 1.3   3 3
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 3 3
No Yes Culex pipiens quinquefasciatus Southern house mosquito 5 5
No Yes Anopheles darlingi 22 American malaria mosquito 4 4
No Yes Anopheles gambiae 49_3j African malaria mosquito 4 4
No Yes Tribolium castaneum 3.0 Red flour beetle 3 3
No Yes Pediculus humanus corporis (Early assembly) Human body louse 3 3
No Yes Acyrthosiphon pisum Pea aphid 3 3
No Yes Rhodnius prolixus 22   2 2
No Yes Daphnia pulex Common water flea 3 3
No Yes Strigamia maritima 22   5 5
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 2 2
No Yes Ixodes scapularis (Preliminary) Black-legged tick 2 2
No Yes Pristionchus pacificus   2 2
No Yes Meloidogyne incognita Southern root-knot nematode 3 3
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   2 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 2 2
No Yes Caenorhabditis japonica   2 2
No Yes Caenorhabditis brenneri   3 3
No Yes Caenorhabditis remanei   3 3
No Yes Caenorhabditis elegans 76_235 Roundworm 4 4
No Yes Caenorhabditis briggsae 2   3 3
No Yes Trichinella spiralis 22   2 2
No Yes Hymenolepis microstoma   3 3
No Yes Echinococcus multilocularis   5 5
No Yes Echinococcus granulosus   3 3
No Yes Taenia solium Pork tapeworm 2 2
No Yes Schistosoma mansoni   4 4
No Yes Mnemiopsis leidyi Sea walnut 4 3
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 4 4
No Yes Hydra vulgaris   2 2
No Yes Amphimedon queenslandica   1 1
No Yes Trichoplax adhaerens   2 2
No Yes Proterospongia sp. ATCC 50818   3 2
No Yes Monosiga brevicollis   2 2
No Yes Sphaeroforma arctica JP610   4 4
No Yes Capsaspora owczarzaki ATCC 30864   4 3
No Yes Conidiobolus coronatus NRRL28638 v1.0   2 2
No Yes Mortierella verticillata NRRL 6337   3 3
No Yes Phycomyces blakesleeanus   3 3
No Yes Rhizopus oryzae RA 99-880   7 6
No Yes Mucor circinelloides   6 6
No Yes Rhizomucor miehei CAU432   4 4
No Yes Malassezia globosa CBS 7966   4 4
No Yes Sporisorium reilianum 22   2 2
No Yes Ustilago maydis   1 1
No Yes Mixia osmundae IAM 14324 v1.0   3 3
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   2 2
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   2 2
No Yes Melampsora laricis-populina   3 3
No Yes Rhodotorula graminis WP1 v1.0   2 2
No Yes Sporobolomyces roseus IAM 13481   2 2
No Yes Microbotryum violaceum 22   4 4
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   3 3
No Yes Piloderma croceum F 1598 v1.0   3 3
No Yes Serpula lacrymans var. lacrymans S7.9   2 2
No Yes Coniophora puteana   3 3
No Yes Hydnomerulius pinastri v2.0   2 2
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   2 2
No Yes Pisolithus microcarpus 441 v1.0   2 2
No Yes Pisolithus tinctorius Marx 270 v1.0   2 2
No Yes Scleroderma citrinum Foug A v1.0   3 3
No Yes Coprinopsis cinerea okayama7 130 v3   3 3
No Yes Pleurotus ostreatus Oyster mushroom 3 3
No Yes Amanita thiersii Skay4041 v1.0   3 3
No Yes Amanita muscaria Koide v1.0 Fly agaric 4 4
No Yes Galerina marginata v1.0   3 3
No Yes Hebeloma cylindrosporum h7 v2.0   3 3
No Yes Laccaria bicolor S238N-H82   4 4
No Yes Agaricus bisporus var. bisporus   3 3
No Yes Schizophyllum commune   2 2
No Yes Stereum hirsutum FP-91666 SS1 v1.0   2 2
No Yes Heterobasidion annosum   2 2
No Yes Gloeophyllum trabeumv1.0   2 2
No Yes Punctularia strigosozonata v1.0   4 4
No Yes Sebacina vermifera MAFF 305830 v1.0   3 3
No Yes Fomitiporia mediterranea v1.0   3 3
No Yes Tulasnella calospora AL13/4D v1.0   4 4
No Yes Postia placenta   2 2
No Yes Wolfiporia cocos MD-104 SS10 v1.0   3 3
No Yes Fomitopsis pinicolav1.0   2 2
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 2
No Yes Phanerochaete chrysosporium RP-78 2.1   2 2
No Yes Dichomitus squalens   3 3
No Yes Trametes versicolor v1.0   3 3
No Yes Tremella mesenterica Witches' butter 3 3
No Yes Daldinia eschscholzii EC12 v1.0   2 2
No Yes Apiospora montagnei NRRL 25634 v1.0   2 2
No Yes Magnaporthe poae ATCC 64411 22   3 3
No Yes Magnaporthe grisea 70-15   2 2
No Yes Podospora anserina   2 2
No Yes Sporotrichum thermophile ATCC 42464   2 2
No Yes Thielavia terrestris NRRL 8126   2 2
No Yes Chaetomium globosum CBS 148.51   2 2
No Yes Neurospora tetrasperma   2 2
No Yes Neurospora discreta FGSC 8579   2 2
No Yes Neurospora crassa OR74A   2 2
No Yes Cryphonectria parasitica Chestnut blight fungus 2 2
No Yes Verticillium albo-atrum VaMs.102   2 2
No Yes Verticillium dahliae VdLs.17   2 2
No Yes Acremonium alcalophilumv 1.0   2 2
No Yes Glomerella graminicola 22   2 2
No Yes Fusarium graminearum   2 2
No Yes Nectria haematococca mpVI   2 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   2 2
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 2
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma citrinoviride v1.0   2 2
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   2 2
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 2
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 2
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 2
No Yes Botrytis cinerea B05.10   2 2
No Yes Sclerotinia sclerotiorum   2 2
No Yes Blumeria graminis 22   2 2
No Yes Didymella exigua CBS 183.55 v1.0   3 3
No Yes Leptosphaeria maculans 22   3 3
No Yes Setosphaeria turcica v1.0   3 3
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   3 3
No Yes Cochliobolus victoriae FI3 v1.0   3 3
No Yes Cochliobolus carbonum 26-R-13 v1.0   3 3
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 3 3
No Yes Alternaria brassicicola   3 3
No Yes Cochliobolus lunatus m118 v2.0   3 3
No Yes Pyrenophora teres f. teres 22   3 3
No Yes Pyrenophora tritici-repentis   3 3
No Yes Stagonospora nodorum   3 3
No Yes Mycosphaerella graminicola IPO323   3 3
No Yes Zasmidium cellare ATCC 36951 v1.0   3 3
No Yes Dothistroma septosporum   3 3
No Yes Septoria musiva v1.0   3 3
No Yes Mycosphaerella fijiensis CIRAD86   4 4
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   3 3
No Yes Paracoccidioides brasiliensis Pb18   2 2
No Yes Coccidioides posadasii RMSCC 3488   2 2
No Yes Coccidioides immitis RS   2 2
No Yes Ajellomyces dermatitidis SLH14081   2 2
No Yes Histoplasma capsulatum class NAmI strain WU24   2 2
No Yes Microsporum canis CBS 113480   2 2
No Yes Trichophyton equinum CBS 127.97   2 2
No Yes Trichophyton verrucosum HKI 0517   2 2
No Yes Arthroderma benhamiae CBS 112371   2 2
No Yes Trichophyton tonsurans CBS 112818   2 2
No Yes Trichophyton rubrum CBS 118892   2 2
No Yes Uncinocarpus reesii 1704   2 2
No Yes Aspergillus zonatus v1.0   2 2
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 2
No Yes Penicillium chrysogenum v1.0   2 2
No Yes Aspergillus acidus v1.0   3 3
No Yes Aspergillus fumigatus Af293   2 2
No Yes Aspergillus brasiliensis v1.0   3 3
No Yes Aspergillus nidulans FGSC A4   2 2
No Yes Aspergillus sydowii v1.0   2 2
No Yes Aspergillus versicolor v1.0   2 2
No Yes Aspergillus glaucus   2 2
No Yes Aspergillus carbonarius ITEM 5010   2 2
No Yes Neosartorya fischeri NRRL 181   2 2
No Yes Aspergillus terreus NIH2624   2 2
No Yes Aspergillus tubingensis v1.0   3 3
No Yes Aspergillus wentii v1.0   2 2
No Yes Aspergillus oryzae RIB40   2 2
No Yes Aspergillus niger 22   3 3
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   2 2
No Yes Penicillium marneffei ATCC 18224   2 2
No Yes Tuber melanosporum Mel28 22   3 3
No Yes Tuber melanosporum Vittad Perigord truffle 3 3
No Yes Hansenula polymorpha v2.0   3 3
No Yes Dekkera bruxellensis CBS 2499 v2.0   2 2
No Yes Pichia membranifaciensv1.0   1 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   3 3
No Yes Candida dubliniensis CD36   3 3
No Yes Candida tropicalis MYA-3404   2 2
No Yes Candida parapsilosis   3 3
No Yes Candida albicans SC5314   2 2
No Yes Lodderomyces elongisporus NRRL YB-4239   4 3
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   3 3
No Yes Pichia stipitis CBS 6054   3 3
No Yes Candida guilliermondii ATCC 6260   3 3
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   3 3
No Yes Debaromyces hansenii   3 3
No Yes Wickerhamomyces anomalus   4 4
No Yes Pichia pastoris GS115   4 3
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   2 2
No Yes Yarrowia lipolytica CLIB122   2 2
No Yes Candida lusitaniae ATCC 42720   3 3
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   3 3
No Yes Vanderwaltozyma polyspora DSM 70294   4 4
No Yes Candida glabrata CBS138   5 5
No Yes Kluyveromyces thermotolerans CBS 6340   3 3
No Yes Lachancea kluyveri   3 3
No Yes Kluyveromyces waltii   3 3
No Yes Ashbya gossypii ATCC 10895   3 3
No Yes Zygosaccharomyces rouxii   3 3
No Yes Saccharomyces mikatae MIT   5 5
No Yes Saccharomyces paradoxus MIT   5 5
No Yes Saccharomyces cerevisiae 76 Baker's yeast 5 5
No Yes Saccharomyces bayanus MIT   5 5
No Yes Kluyveromyces lactis   3 3
No Yes Schizosaccharomyces cryophilus OY26 22   2 2
No Yes Schizosaccharomyces octosporus yFS286   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 2 2
No Yes Catenaria anguillulae PL171 v1.0   5 5
No Yes Allomyces macrogynus ATCC 38327   7 5
No Yes Spizellomyces punctatus DAOM BR117   4 3
No Yes Dictyostelium discoideum   3 3
No Yes Dictyostelium purpureum   2 2
No Yes Selaginella moellendorffii   19 14
No Yes Pinus taeda Loblolly pine 6 6
No Yes Picea abies Norway spruce 6 6
No Yes Eucalyptus grandis v201 Rose gum 27 22
No Yes Theobroma cacao B97-61/B2 v1 Cacao 21 17
No Yes Gossypium raimondii v221   81 57
No Yes Citrus clementina v165   25 21
No Yes Citrus sinensis v154 Sweet orange 40 30
No Yes Thellungiella halophila v173   23 20
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 26 21
No Yes Capsella rubella v183   23 20
No Yes Arabidopsis lyrata Lyrate rockcress 25 20
No Yes Arabidopsis thaliana 10 Thale cress 27 21
No Yes Carica papaya Papaya 15 12
No Yes Medicago truncatula Barrel medic 29 24
No Yes Phaseolus vulgaris v186 French bean 29 25
No Yes Glycine max v109 Soybean 42 36
No Yes Cucumis sativus v122 Cucumber 26 22
No Yes Fragaria vesca Wild strawberry 21 18
No Yes Malus domestica v196 Apple 40 31
No Yes Prunus persica v139 Peach 18 15
No Yes Linum usitatissimum v200 Flax 27 23
No Yes Manihot esculenta v147 Cassava 28 24
No Yes Populus trichocarpa v156 Black cottonwood 31 26
No Yes Vitis vinifera Wine grape 21 17
No Yes Mimulus guttatus v140 Spotted monkey flower 25 21
No Yes Solanum lycopersicum v.2.3 Tomato 19 16
No Yes Solanum tuberosum Potato 29 25
No Yes Actinidia chinensis Hongyang   34 27
No Yes Aquilegia coerulea v195   25 20
No Yes Triticum urartu 22   16 13
No Yes Triticum aestivum 22 Bread wheat 46 39
No Yes Aegilops tauschii 22   15 12
No Yes Brachypodium distachyon Stiff brome 23 19
No Yes Oryza barthii 22 African wild rice 19 17
No Yes Oryza meridionalis 22   21 18
No Yes Oryza glumaepatula 22   25 22
No Yes Oryza glaberrima African rice 17 13
No Yes Oryza punctata 22   28 23
No Yes Oryza nivara 22   25 21
No Yes Oryza brachyantha 22 Malo sina 17 14
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 16 13
No Yes Oryza sativa v193 Rice 16 13
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 27 23
No Yes Panicum virgatum v202 Switchgrass 30 24
No Yes Setaria italica v164 Foxtail millet 16 13
No Yes Zea mays subsp. mays Maize 36 28
No Yes Zea mays v181 Maize 39 32
No Yes Sorghum bicolor Sorghum 16 13
No Yes Musa balbisiana Balbis banana 23 20
No Yes Musa acuminata 22 Wild Malaysian banana 27 24
No Yes Amborella trichopoda 22   11 9
No Yes Physcomitrella patens   10 8
No Yes Coccomyxa subellipsoidea sp. C-169 v2   3 2
No Yes Asterochloris sp. Cgr/DA1pho v1.0   4 3
No Yes Chlorella variabilis sp. NC64A   3 2
No Yes Chlorella vulgaris   3 2
No Yes Volvox carteri f. nagariensis   3 2
No Yes Volvox carteri v199   3 2
No Yes Chlamydomonas reinhardtii 4.0   3 2
No Yes Ostreococcus sp. RCC809   2 2
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   2 2
No Yes Micromonas sp. RCC299   2 2
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Cyanidioschyzon merolae strain 10D 22   3 2
No Yes Cyanidioschyzon merolae   3 2
No Yes Porphyridium purpureum 02_2012   9 5
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   4 4
No Yes Cyanophora paradoxa   3 3
No Yes Ectocarpus siliculosus   4 3
No Yes Aureococcus anophagefferens   3 2
No Yes Albugo laibachii 22   35 34
No Yes Pythium iwayamai DAOM BR242034 22   5 4
No Yes Pythium arrhenomanes ATCC 12531 22   3 2
No Yes Pythium ultimum v1.7-2   5 4
No Yes Pythium aphanidermatum DAOM BR444 22   5 4
No Yes Pythium irregulare DAOM BR486 22   5 4
No Yes Pythium vexans DAOM BR484 22   4 4
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 5 4
No Yes Phytophthora sojae 1.1   5 4
No Yes Phytophthora infestans T30-4   5 4
No Yes Phytophthora capsici   5 4
No Yes Hyaloperonospora arabidopsidis 22   5 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   3 2
No Yes Fragilariopsis cylindrus   3 3
No Yes Thalassiosira pseudonana CCMP1335   3 2
No Yes Perkinsus marinus ATCC 50983   4 4
No Yes Paramecium tetraurelia   2 2
No Yes Tetrahymena thermophila SB210 1   1 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   3 3
No Yes Toxoplasma gondii VEG   3 3
No Yes Toxoplasma gondii ME49   3 3
No Yes Toxoplasma gondii GT1   3 3
No Yes Theileria parva   1 1
No Yes Theileria annulata   1 1
No Yes Plasmodium falciparum 3D7   2 2
No Yes Plasmodium vivax SaI-1 7.0   3 3
No Yes Plasmodium knowlesi strain H   3 3
No Yes Plasmodium yoelii ssp. yoelii 1   3 3
No Yes Plasmodium chabaudi   3 3
No Yes Plasmodium berghei ANKA   3 3
No Yes Symbiodinium minutum clade B1 v1.2   1 1
No Yes Naegleria gruberi   2 2
No Yes Trichomonas vaginalis   2 2
No Yes Guillardia theta CCMP2712 v1.0   3 3
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Gemmatimonas aurantiaca T-27   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Waddlia chondrophila WSU 86-1044   2 2
No Yes Candidatus Protochlamydia amoebophila UWE25   2 2
No Yes Parachlamydia acanthamoebae UV-7   2 2
No Yes Simkania negevensis Z   3 3
No Yes Chlamydophila pecorum E58   2 2
No Yes Chlamydia muridarum Nigg   2 2
No Yes Chlamydophila pneumoniae TW-183   2 2
No Yes Chlamydophila caviae GPIC   2 2
No Yes Chlamydophila felis Fe/C-56   2 2
No Yes Chlamydophila abortus S26/3   2 2
No Yes Chlamydia psittaci 01DC11   2 2
No Yes Chlamydia trachomatis B/Jali20/OT   2 2
No Yes Opitutus terrae PB90-1   1 1
No Yes Elusimicrobium minutum Pei191   1 1
No Yes Bacteriovorax marinus SJ   2 2
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Methylibium petroleiphilum PM1   1 1
No Yes Thiomonas arsenitoxydans   1 1
No Yes Thiomonas intermedia K12   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Alicycliphilus denitrificans K601   2 2
No Yes Ramlibacter tataouinensis TTB310   2 2
No Yes Delftia sp. Cs1-4   2 2
No Yes Delftia acidovorans SPH-1   2 2
No Yes Polaromonas sp. JS666   2 2
No Yes Polaromonas naphthalenivorans CJ2   2 2
No Yes Variovorax paradoxus S110   2 2
No Yes Rhodoferax ferrireducens T118   2 2
No Yes Acidovorax ebreus TPSY   2 2
No Yes Acidovorax sp. KKS102   2 2
No Yes Acidovorax sp. JS42   2 2
No Yes Acidovorax citrulli AAC00-1   2 2
No Yes Acidovorax avenae subsp. avenae ATCC 19860   2 2
No Yes Comamonas testosteroni CNB-2   2 2
No Yes Herminiimonas arsenicoxydans   1 1
No Yes Collimonas fungivorans Ter331   1 1
No Yes Janthinobacterium sp. Marseille   1 1
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Pusillimonas sp. T7-7   1 1
No Yes Advenella kashmirensis WT001   1 1
No Yes Taylorella asinigenitalis MCE3   1 1
No Yes Taylorella equigenitalis MCE9   1 1
No Yes Bordetella petrii DSM 12804   1 1
No Yes Bordetella avium 197N   1 1
No Yes Bordetella pertussis Tohama I   1 1
No Yes Bordetella parapertussis 12822   1 1
No Yes Bordetella bronchiseptica RB50   1 1
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Achromobacter xylosoxidans   1 1
No Yes Phenylobacterium zucineum HLK1   2 2
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Methylobacterium extorquens AM1   2 2
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Methylocella silvestris BL2   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 20 16
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 3 3
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 4 4
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 3 3
No Yes Cryptococcus neoformans var. grubii H99   3 3
No Yes Cryptococcus neoformans B-3501A   3 3
No Yes Cryptococcus neoformans JEC21   2 2
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   2 2
No Yes Coccidioides posadasii str. Silveira   2 2
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   2 2
No Yes Coccidioides immitis H538.4   2 2
No Yes Ajellomyces dermatitidis ER-3   2 2
No Yes Histoplasma capsulatum H143   2 2
No Yes Histoplasma capsulatum H88   2 2
No Yes Histoplasma capsulatum G186AR   2 2
No Yes Aspergillus fumigatus A1163   2 2
No Yes Candida albicans WO-1   2 2
No Yes Saccharomyces cerevisiae UC5   3 3
No Yes Saccharomyces cerevisiae PW5   5 5
No Yes Saccharomyces cerevisiae FL100   3 3
No Yes Saccharomyces cerevisiae CLIB382   2 2
No Yes Saccharomyces cerevisiae CLIB324   3 3
No Yes Saccharomyces cerevisiae CBS7960   3 3
No Yes Saccharomyces cerevisiae YJM269   5 5
No Yes Saccharomyces cerevisiae T7   5 5
No Yes Saccharomyces cerevisiae FostersB   3 3
No Yes Saccharomyces cerevisiae FostersO   4 4
No Yes Saccharomyces cerevisiae VL3   5 5
No Yes Saccharomyces cerevisiae Vin13   5 5
No Yes Saccharomyces cerevisiae LalvinQA23   5 5
No Yes Saccharomyces cerevisiae AWRI796   4 4
No Yes Saccharomyces cerevisiae Sigma1278b   5 5
No Yes Saccharomyces cerevisiae W303   5 5
No Yes Saccharomyces cerevisiae JAY291   5 5
No Yes Saccharomyces cerevisiae AWRI1631   5 5
No Yes Saccharomyces cerevisiae YPS163   2 2
No Yes Saccharomyces cerevisiae T73   3 3
No Yes Saccharomyces cerevisiae CLIB215   5 5
No Yes Saccharomyces cerevisiae Y10   3 3
No Yes Saccharomyces cerevisiae YJM789   5 5
No Yes Saccharomyces cerevisiae YJM789   5 5
No Yes Saccharomyces cerevisiae RM11-1a   5 5
No Yes Saccharomyces cerevisiae RM11-1a   5 5
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 5 5
No Yes Schizosaccharomyces pombe 972h-   2 2
No Yes Batrachochytrium dendrobatidis JEL423   3 3
No Yes Batrachochytrium dendrobatidis JAM81   4 3
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 22 17
No Yes Hordeum vulgare 22 Domesticated barley 20 19
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 17 14
No Yes Neospora caninum Nc-Liverpool 6.2   3 3
No Yes Plasmodium falciparum HB3   2 2
No Yes Plasmodium falciparum Dd2   1 1
No Yes Chlamydia pecorum P787   2 2
No Yes Chlamydia pecorum W73   2 2
No Yes Chlamydia pecorum PV3056/3   2 2
No Yes Chlamydophila pneumoniae LPCoLN   2 2
No Yes Chlamydophila pneumoniae J138   2 2
No Yes Chlamydophila pneumoniae CWL029   2 2
No Yes Chlamydophila pneumoniae AR39   2 2
No Yes Chlamydia psittaci 01DC12   2 2
No Yes Chlamydia psittaci WC   2 2
No Yes Chlamydia psittaci M56   2 2
No Yes Chlamydia psittaci WS/RT/E30   2 2
No Yes Chlamydia psittaci VS225   2 2
No Yes Chlamydia psittaci MN   2 2
No Yes Chlamydia psittaci GR9   2 2
No Yes Chlamydia psittaci 84/55   2 2
No Yes Chlamydia psittaci 08DC60   2 2
No Yes Chlamydia psittaci 02DC15   2 2
No Yes Chlamydia psittaci C19/98   2 2
No Yes Chlamydia psittaci NJ1   2 2
No Yes Chlamydia psittaci CP3   2 2
No Yes Chlamydophila psittaci RD1   2 2
No Yes Chlamydia psittaci Mat116   2 2
No Yes Chlamydophila psittaci 6BC   2 2
No Yes Chlamydophila psittaci 6BC   2 2
No Yes Chlamydia trachomatis C/TW-3   2 2
No Yes Chlamydia trachomatis L2/434/Bu(f)   2 2
No Yes Chlamydia trachomatis L2/434/Bu(i)   2 2
No Yes Chlamydia trachomatis IU888   2 2
No Yes Chlamydia trachomatis IU824   2 2
No Yes Chlamydia trachomatis L2b/Canada2   2 2
No Yes Chlamydia trachomatis L2b/Canada1   2 2
No Yes Chlamydia trachomatis L3/404/LN   2 2
No Yes Chlamydia trachomatis L2b/Ams5   2 2
No Yes Chlamydia trachomatis L2b/Ams4   2 2
No Yes Chlamydia trachomatis L2b/Ams3   2 2
No Yes Chlamydia trachomatis L2b/Ams2   2 2
No Yes Chlamydia trachomatis L2b/Ams1   2 2
No Yes Chlamydia trachomatis L2b/795   2 2
No Yes Chlamydia trachomatis L2b/CV204   2 2
No Yes Chlamydia trachomatis L2b/LST   2 2
No Yes Chlamydia trachomatis L2b/UCH-2   2 2
No Yes Chlamydia trachomatis L2b/8200/07   2 2
No Yes Chlamydia trachomatis L2/25667R   2 2
No Yes Chlamydia trachomatis L1/224   2 2
No Yes Chlamydia trachomatis L1/115   2 2
No Yes Chlamydia trachomatis L1/440/LN   2 2
No Yes Chlamydia trachomatis K/SotonK1   2 2
No Yes Chlamydia trachomatis Ia/SotonIa3   2 2
No Yes Chlamydia trachomatis Ia/SotonIa1   2 2
No Yes Chlamydia trachomatis G/SotonG1   2 2
No Yes Chlamydia trachomatis F/SotonF3   2 2
No Yes Chlamydia trachomatis F/SW5   2 2
No Yes Chlamydia trachomatis F/SW4   2 2
No Yes Chlamydia trachomatis E/SotonE8   2 2
No Yes Chlamydia trachomatis E/SotonE4   2 2
No Yes Chlamydia trachomatis E/SW3   2 2
No Yes Chlamydia trachomatis D/SotonD6   2 2
No Yes Chlamydia trachomatis D/SotonD5   2 2
No Yes Chlamydia trachomatis D/SotonD1   2 2
No Yes Chlamydia trachomatis A/5291   2 2
No Yes Chlamydia trachomatis A/363   2 2
No Yes Chlamydia trachomatis RC-J/971   2 2
No Yes Chlamydia trachomatis RC-L2/55   2 2
No Yes Chlamydia trachomatis J/6276tet1   2 2
No Yes Chlamydia trachomatis RC-J/966   2 2
No Yes Chlamydia trachomatis RC-J(s)/122   2 2
No Yes Chlamydia trachomatis RC-F(s)/342   2 2
No Yes Chlamydia trachomatis RC-L2(s)/3   2 2
No Yes Chlamydia trachomatis RC-J/953   2 2
No Yes Chlamydia trachomatis RC-J943   2 2
No Yes Chlamydia trachomatis RC-Fs852   2 2
No Yes Chlamydia trachomatis RC-L2s46   2 2
No Yes Chlamydia trachomatis RC-F69   2 2
No Yes Chlamydia trachomatis L2c   2 2
No Yes Chlamydia trachomatis D-LC   2 2
No Yes Chlamydia trachomatis D-EC   2 2
No Yes Chlamydia trachomatis G/9301   2 2
No Yes Chlamydia trachomatis G/11074   2 2
No Yes Chlamydia trachomatis G/11222   2 2
No Yes Chlamydia trachomatis G/9768   2 2
No Yes Chlamydia trachomatis E/150   2 2
No Yes Chlamydia trachomatis E/11023   2 2
No Yes Chlamydia trachomatis B/TZ1A828/OT   2 2
No Yes Chlamydia trachomatis Sweden2   2 2
No Yes Chlamydia trachomatis E/Bour   2 2
No Yes Chlamydia trachomatis A2497   2 2
No Yes Chlamydia trachomatis A2497   2 2
No Yes Chlamydia trachomatis L2b/UCH-1/proctitis   2 2
No Yes Chlamydia trachomatis 434/Bu   2 2
No Yes Chlamydia trachomatis A/HAR-13   2 2
No Yes Chlamydia trachomatis D/UW-3/CX   2 2
No Yes Bdellovibrio exovorus JSS   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR   1 1
No Yes Alicycliphilus denitrificans BC   2 2
No Yes Variovorax paradoxus B4   2 2
No Yes Variovorax paradoxus EPS   2 2
No Yes Taylorella asinigenitalis 14/45   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Taylorella equigenitalis ATCC 35865   1 1
No Yes Bordetella pertussis CS   1 1
No Yes Bordetella parapertussis 18323   1 1
No Yes Bordetella parapertussis Bpp5   1 1
No Yes Bordetella bronchiseptica MO149   1 1
No Yes Bordetella bronchiseptica 253   1 1
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   1 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens PA1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 52 46
No Yes Homo sapiens (NCBI version) Human 12 11
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 7 6
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 2 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 3 3
No Yes Encephalitozoon intestinalis (endoparasite)   1 1
No Yes Encephalitozoon cuniculi (endoparasite)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 4 2
No Yes Lotus japonicus (Early assembly)   16 14
No Yes Malus x domestica (Duplicate) Apple 40 31
No Yes Ricinus communis (Early assembly) Castor bean 18 13
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   39 33
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 17 14
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 19 16
No Yes Phoenix dactylifera (Early draft) Date palm 18 13
No Yes Homo sapiens 69_37 Human 8 7
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 7 6
No Yes Gorilla gorilla 69_3.1 Western gorilla 7 6
No Yes Pongo abelii 69_2 Sumatran orangutan 7 6
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 7 6
No Yes Macaca mulatta 69_1 Rhesus monkey 8 7
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 10 9
No Yes Otolemur garnettii 69_3 Small-eared galago 10 8
No Yes Microcebus murinus 69_1 Gray mouse lemur 5 5
No Yes Rattus norvegicus 69_3.4 Norway rat 7 6
No Yes Mus musculus 69_38 House mouse 7 6
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 7 6
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 8 6
No Yes Cavia porcellus 69_3 Domestic guinea pig 7 6
No Yes Oryctolagus cuniculus 69_2 Rabbit 10 8
No Yes Ochotona princeps 69 American pika 7 6
No Yes Tupaia belangeri 69 Northern tree shrew 4 4
No Yes Sus scrofa 69_10.2 Pig 6 5
No Yes Bos taurus 69_3.1 Cattle 7 6
No Yes Vicugna pacos 69_1 Alpaca 6 5
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 7 6
No Yes Mustela putorius furo 69_1.0 Domestic ferret 8 7
No Yes Ailuropoda melanoleuca 69_1 Giant panda 7 6
No Yes Canis familiaris 69_3.1 Dog 7 6
No Yes Felis catus 69 Domestic cat 4 4
No Yes Equus caballus 69_2 Horse 7 6
No Yes Myotis lucifugus 69_2.0 Little brown bat 8 7
No Yes Pteropus vampyrus 69_1 Large flying fox 7 6
No Yes Sorex araneus 69_1 European shrew 6 5
No Yes Erinaceus europaeus 69 Western European hedgehog 6 5
No Yes Procavia capensis 69_1 Cape rock hyrax 6 5
No Yes Loxodonta africana 69_3 African savanna elephant 7 6
No Yes Echinops telfairi 69 Small Madagascar hedgehog 7 6
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 5 5
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 6 5
No Yes Macropus eugenii 69_1.0 Tammar wallaby 5 5
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 10 8
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 7 6
No Yes Ornithorhynchus anatinus 69_5 Platypus 5 4
No Yes Petromyzon marinus 69_7.0 Sea lamprey 2 2
No Yes Meleagris gallopavo 69_2 Turkey 7 6
No Yes Gallus gallus 69_2 Chicken 7 6
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 4 3
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 8 7
No Yes Anolis carolinensis 69_2.0 Green anole 5 4
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 7 6
No Yes Latimeria chalumnae 69_1 Coelacanth 8 7
No Yes Gadus morhua 69_1 Atlantic cod 6 6
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 7 7
No Yes Takifugu rubripes 69_4 Torafugu 7 6
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 7 6
No Yes Oryzias latipes 69_1 Japanese medaka 7 6
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 7 6
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 7 6
No Yes Danio rerio 69_9 Zebrafish 7 7
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 69 Vase tunicate 3 3
No Yes Drosophila melanogaster 69_5 Fruit fly 3 3
No Yes Caenorhabditis elegans 69_215 Roundworm 3 3
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 5 5
No Yes Arabidopsis thaliana 10 Thale cress 24 19
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   14 14
No Yes Dump top (Dump top) (meta-genome)   10 10
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   4 4
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   4 4
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   3 3
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   11059 9898
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   6 6
No Yes Protozoadb 2010_08 (Protozoadb)   42 42
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   14 14
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   13 13
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   6 6
No Yes STRING v9.0.5 (STRING)   641 580
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   4 4
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   3 3
No Yes Uniprot 2018_03 genome   9984 9106
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   320 318
No Yes NCBI plasmid sequences (Plasmids)   2 2
No Yes NCBI viral sequences (Viral)   26 24
No Yes PDB chains (SCOP 1.75) (PDB)   10 10
No Yes Protein Data Bank (all PDB sequenc)   260 260
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   552 552
No Yes TargetDB (Targets)   30 29
No Yes UniProt viral sequences (Viral)   9 8

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