Cyclin-like superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		21166	21166
No Yes	Homo sapiens 49_36k (all transcripts)	Human	121	86
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	95	65
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	44	32
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	73	48
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	93	70
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	142	96
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	56	37
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	54	39
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	40	25
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	81	52
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	92	60
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	45	32
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	52	34
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	71	48
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	46	35
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	53	36
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	57	38
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	56	39
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	75	52
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	37	23
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	57	37
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	86	55
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	42	32
No Yes	Equus caballus 49_2 (all transcripts)	Horse	61	38
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	57	35
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	57	40
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	51	36
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	46	30
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	56	38
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	37	25
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	49	33
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	47	33
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	47	31
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	90	59
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	86	57
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	57	38
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	56	36
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	57	38
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	78	49
No Yes	Xenopus laevis	African clawed frog	233	141
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	70	47
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	96	64
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	96	68
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	83	58
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	75	54
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	197	132
No Yes	Branchiostoma floridae 1.0	Florida lancelet	73	48
No Yes	Ciona savignyi 49_2f (all transcripts)		39	25
No Yes	Ciona intestinalis 49_2i (all transcripts)		46	27
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	78	49
No Yes	Helobdella robusta		43	28
No Yes	Capitella sp. I		45	29
No Yes	Bombyx mori	Domestic silkworm	27	21
No Yes	Nasonia vitripennis	Jewel wasp	29	18
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	72	45
No Yes	Drosophila grimshawi 1.3		45	27
No Yes	Drosophila willistoni 1.3		35	22
No Yes	Drosophila pseudoobscura 2.3		43	27
No Yes	Drosophila persimilis 1.3		40	25
No Yes	Drosophila yakuba 1.3		37	23
No Yes	Drosophila simulans 1.3		31	20
No Yes	Drosophila sechellia 1.3		32	20
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	59	42
No Yes	Drosophila erecta 1.3		33	21
No Yes	Drosophila ananassae 1.3		33	21
No Yes	Drosophila virilis 1.2		35	23
No Yes	Drosophila mojavensis 1.3		35	22
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	40	24
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	38	26
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	36	23
No Yes	Tribolium castaneum 3.0	Red flour beetle	35	23
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	29	20
No Yes	Acyrthosiphon pisum	Pea aphid	31	21
No Yes	Daphnia pulex	Common water flea	53	33
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	31	22
No Yes	Lottia gigantea		39	25
No Yes	Pristionchus pacificus		33	24
No Yes	Meloidogyne incognita	Southern root-knot nematode	31	22
No Yes	Meloidogyne hapla		24	17
No Yes	Brugia malayi	Agent of lymphatic filariasis	19	13
No Yes	Caenorhabditis japonica		31	20
No Yes	Caenorhabditis brenneri		33	21
No Yes	Caenorhabditis remanei		44	28
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	71	50
No Yes	Caenorhabditis briggsae 2		31	22
No Yes	Schistosoma mansoni		35	23
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	39	27
No Yes	Hydra magnipapillata		29	18
No Yes	Trichoplax adhaerens		34	21
No Yes	Proterospongia sp. ATCC 50818		29	19
No Yes	Monosiga brevicollis		26	19
No Yes	Capsaspora owczarzaki ATCC 30864		28	18
No Yes	Malassezia globosa CBS 7966		16	11
No Yes	Ustilago maydis		21	13
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		24	16
No Yes	Melampsora laricis-populina		22	15
No Yes	Sporobolomyces roseus IAM 13481		19	13
No Yes	Serpula lacrymans var. lacrymans S7.9		36	21
No Yes	Coprinopsis cinerea okayama7 130		32	21
No Yes	Pleurotus ostreatus	Oyster mushroom	26	17
No Yes	Laccaria bicolor S238N-H82		30	21
No Yes	Agaricus bisporus var. bisporus		23	14
No Yes	Schizophyllum commune		30	21
No Yes	Heterobasidion annosum		27	17
No Yes	Phanerochaete chrysosporium RP-78 2.1		23	16
No Yes	Postia placenta		41	27
No Yes	Tremella mesenterica		18	12
No Yes	Cryptococcus neoformans JEC21		24	15
No Yes	Magnaporthe grisea 70-15		22	14
No Yes	Podospora anserina		21	14
No Yes	Sporotrichum thermophile ATCC 42464		20	13
No Yes	Thielavia terrestris NRRL 8126		21	14
No Yes	Chaetomium globosum CBS 148.51		21	14
No Yes	Neurospora tetrasperma		19	12
No Yes	Neurospora discreta FGSC 8579		20	13
No Yes	Neurospora crassa OR74A		20	13
No Yes	Cryphonectria parasitica	Chestnut blight fungus	21	13
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		25	15
No Yes	Nectria haematococca mpVI		24	14
No Yes	Fusarium verticillioides 7600		20	13
No Yes	Fusarium graminearum		20	12
No Yes	Trichoderma atroviride		19	11
No Yes	Trichoderma reesei 1.2		19	11
No Yes	Trichoderma virens Gv29-8		19	12
No Yes	Verticillium dahliae VdLs.17		22	15
No Yes	Verticillium albo-atrum VaMs.102		18	12
No Yes	Botrytis cinerea B05.10		17	11
No Yes	Sclerotinia sclerotiorum		19	12
No Yes	Alternaria brassicicola		20	13
No Yes	Pyrenophora tritici-repentis		20	13
No Yes	Cochliobolus heterostrophus		23	14
No Yes	Stagonospora nodorum		18	12
No Yes	Mycosphaerella fijiensis CIRAD86		21	13
No Yes	Mycosphaerella graminicola IPO323		21	12
No Yes	Ajellomyces dermatitidis SLH14081		21	13
No Yes	Histoplasma capsulatum class NAmI strain WU24		18	11
No Yes	Microsporum gypseum		21	13
No Yes	Arthroderma benhamiae CBS 112371		19	11
No Yes	Microsporum canis CBS 113480		20	11
No Yes	Trichophyton equinum CBS 127.97		20	12
No Yes	Trichophyton verrucosum HKI 0517		21	13
No Yes	Trichophyton tonsurans CBS 112818		19	12
No Yes	Trichophyton rubrum CBS 118892		19	12
No Yes	Paracoccidioides brasiliensis Pb18		20	11
No Yes	Coccidioides posadasii RMSCC 3488		21	12
No Yes	Coccidioides immitis RS		20	11
No Yes	Uncinocarpus reesii 1704		18	10
No Yes	Aspergillus fumigatus Af293		22	14
No Yes	Neosartorya fischeri NRRL 181		22	14
No Yes	Penicillium chrysogenum Wisconsin 54-1255		22	13
No Yes	Penicillium marneffei ATCC 18224		22	12
No Yes	Aspergillus carbonarius ITEM 5010		22	13
No Yes	Aspergillus terreus NIH2624		20	12
No Yes	Aspergillus oryzae RIB40		19	11
No Yes	Aspergillus niger ATCC 1015		10	6
No Yes	Aspergillus flavus NRRL3357		20	12
No Yes	Aspergillus clavatus NRRL 1		21	13
No Yes	Aspergillus nidulans FGSC A4		22	13
No Yes	Tuber melanosporum Vittad	Perigord truffle	27	18
No Yes	Candida dubliniensis CD36		24	16
No Yes	Candida tropicalis MYA-3404		23	16
No Yes	Candida parapsilosis		23	16
No Yes	Candida albicans SC5314		22	14
No Yes	Yarrowia lipolytica CLIB122		22	13
No Yes	Candida lusitaniae ATCC 42720		21	15
No Yes	Vanderwaltozyma polyspora DSM 70294		29	20
No Yes	Candida glabrata CBS138		31	20
No Yes	Kluyveromyces thermotolerans CBS 6340		23	15
No Yes	Lachancea kluyveri		25	16
No Yes	Kluyveromyces waltii		25	17
No Yes	Lodderomyces elongisporus NRRL YB-4239		20	14
No Yes	Ashbya gossypii ATCC 10895		23	15
No Yes	Debaromyces hansenii		20	13
No Yes	Zygosaccharomyces rouxii		25	17
No Yes	Saccharomyces mikatae MIT		29	20
No Yes	Saccharomyces paradoxus MIT		30	20
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	30	20
No Yes	Saccharomyces bayanus MIT		28	18
No Yes	Candida guilliermondii ATCC 6260		21	14
No Yes	Pichia stipitis CBS 6054		21	15
No Yes	Pichia pastoris GS115		20	14
No Yes	Kluyveromyces lactis		25	17
No Yes	Schizosaccharomyces octosporus yFS286		23	13
No Yes	Schizosaccharomyces japonicus yFS275		22	13
No Yes	Schizosaccharomyces pombe	Fission yeast	25	14
No Yes	Allomyces macrogynus ATCC 38327		53	40
No Yes	Rhizopus oryzae RA 99-880		27	23
No Yes	Phycomyces blakesleeanus		32	25
No Yes	Mucor circinelloides		27	21
No Yes	Encephalitozoon intestinalis		10	7
No Yes	Encephalitozoon cuniculi		11	8
No Yes	Spizellomyces punctatus DAOM BR117		30	19
No Yes	Batrachochytrium dendrobatidis JEL423		27	19
No Yes	Dictyostelium discoideum		30	20
No Yes	Dictyostelium purpureum		28	18
No Yes	Entamoeba dispar		18	13
No Yes	Entamoeba invadens		17	11
No Yes	Entamoeba histolytica 1		19	14
No Yes	Arabidopsis lyrata	Lyrate rockcress	105	66
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	114	70
No Yes	Carica papaya	Papaya	58	40
No Yes	Medicago truncatula	Barrel medic	72	47
No Yes	Glycine max	Soybean	179	115
No Yes	Cucumis sativus	Cucumber	125	82
No Yes	Populus trichocarpa 1.1	Black cottonwood	117	77
No Yes	Vitis vinifera	Wine grape	86	52
No Yes	Brachypodium distachyon		103	65
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	136	84
No Yes	Zea mays subsp. mays	Maize	220	147
No Yes	Sorghum bicolor	Sorghum	93	60
No Yes	Selaginella moellendorffii		78	48
No Yes	Physcomitrella patens subsp. patens		61	36
No Yes	Coccomyxa sp. C-169		22	14
No Yes	Chlorella sp. NC64A		25	16
No Yes	Chlorella vulgaris		25	17
No Yes	Volvox carteri f. nagariensis		33	24
No Yes	Chlamydomonas reinhardtii 4.0		36	27
No Yes	Ostreococcus sp. RCC809		21	12
No Yes	Ostreococcus lucimarinus CCE9901		25	14
No Yes	Ostreococcus tauri		23	13
No Yes	Micromonas sp. RCC299		20	11
No Yes	Micromonas pusilla CCMP1545		22	13
No Yes	Cyanidioschyzon merolae		19	14
No Yes	Giardia lamblia		14	10
No Yes	Trypanosoma cruzi strain CL Brener		22	17
No Yes	Trypanosoma brucei		12	10
No Yes	Leishmania mexicana		16	13
No Yes	Leishmania major strain Friedlin		16	13
No Yes	Leishmania infantum JPCM5		17	14
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		15	12
No Yes	Aureococcus anophagefferens		16	12
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	29	20
No Yes	Phytophthora sojae 1.1		34	23
No Yes	Phytophthora infestans T30-4		38	26
No Yes	Phytophthora capsici		32	22
No Yes	Phaeodactylum tricornutum		38	27
No Yes	Fragilariopsis cylindrus		67	49
No Yes	Thalassiosira pseudonana		66	56
No Yes	Paramecium tetraurelia		181	149
No Yes	Tetrahymena thermophila SB210 1		47	36
No Yes	Babesia bovis T2Bo		10	8
No Yes	Theileria parva		8	5
No Yes	Theileria annulata		10	7
No Yes	Plasmodium falciparum 3D7		9	6
No Yes	Plasmodium vivax SaI-1		10	7
No Yes	Plasmodium knowlesi strain H		9	7
No Yes	Plasmodium yoelii ssp. yoelii 1		10	8
No Yes	Plasmodium chabaudi		11	8
No Yes	Plasmodium berghei ANKA		9	6
No Yes	Cryptosporidium hominis		13	11
No Yes	Cryptosporidium muris		15	11
No Yes	Cryptosporidium parvum Iowa II		15	12
No Yes	Neospora caninum Nc-Liverpool		14	11
No Yes	Neospora caninum		11	9
No Yes	Toxoplasma gondii ME49		14	11
No Yes	Naegleria gruberi		29	17
No Yes	Trichomonas vaginalis		53	38
No Yes	Guillardia theta		5	3
No Yes	Emiliania huxleyi CCMP1516		54	36
No Yes	Exiguobacterium sibiricum 255-15		1	1
No Yes	Paenibacillus sp. JDR-2		1	1
No Yes	Bacillus subtilis ssp. subtilis 168		1	1
No Yes	Bacillus amyloliquefaciens FZB42		1	1
No Yes	Pseudomonas putida KT2440		1	1
No Yes	Nitrosopumilus maritimus SCM1		16	8
No Yes	Nanoarchaeum equitans Kin4-M		2	1
No Yes	Candidatus Korarchaeum cryptofilum OPF8		4	2
No Yes	Methanocella paludicola SANAE		2	1
No Yes	Methanosaeta thermophila PT		2	1
No Yes	Methanococcoides burtonii DSM 6242		2	1
No Yes	Methanosarcina acetivorans C2A		2	1
No Yes	Methanosarcina mazei Go1		2	1
No Yes	Methanosarcina barkeri Fusaro		2	1
No Yes	Methanohalophilus mahii DSM 5219		2	1
No Yes	Methanosphaerula palustris E1-9c		2	1
No Yes	Candidatus Methanoregula boonei 6A8		2	1
No Yes	Methanospirillum hungatei JF-1		2	1
No Yes	Methanocorpusculum labreanum Z		2	1
No Yes	Methanoculleus marisnigri JR1		2	1
No Yes	Methanopyrus kandleri AV19		4	2
No Yes	Ferroglobus placidus DSM 10642		4	2
No Yes	Archaeoglobus profundus DSM 5631		2	1
No Yes	Archaeoglobus fulgidus DSM 4304		2	1
No Yes	Thermococcus onnurineus NA1		4	2
No Yes	Thermococcus kodakarensis KOD1		4	2
No Yes	Thermococcus gammatolerans EJ3		4	2
No Yes	Thermococcus sibiricus MM 739		4	2
No Yes	Pyrococcus horikoshii OT3		4	2
No Yes	Pyrococcus abyssi GE5		2	1
No Yes	Pyrococcus furiosus DSM 3638		4	2
No Yes	Thermoplasma volcanium GSS1		6	3
No Yes	Thermoplasma acidophilum DSM 1728		6	3
No Yes	Picrophilus torridus DSM 9790		4	2
No Yes	Haloquadratum walsbyi DSM 16790		17	9
No Yes	Halomicrobium mukohataei DSM 12286		12	7
No Yes	Halorhabdus utahensis DSM 12940		16	9
No Yes	Haloterrigena turkmenica DSM 5511		11	6
No Yes	Natronomonas pharaonis DSM 2160		15	8
No Yes	Natrialba magadii ATCC 43099		13	7
No Yes	Halorubrum lacusprofundi ATCC 49239		17	9
No Yes	Haloferax volcanii DS2		13	7
No Yes	Halobacterium salinarum R1		11	6
No Yes	Halobacterium sp. NRC-1		11	6
No Yes	Haloarcula marismortui ATCC 43049		14	8
No Yes	Methanocaldococcus sp. FS406-22		2	1
No Yes	Methanocaldococcus fervens AG86		2	1
No Yes	Methanocaldococcus vulcanius M7		2	1
No Yes	Methanocaldococcus jannaschii DSM 2661		2	1
No Yes	Methanococcus aeolicus Nankai-3		2	1
No Yes	Methanococcus maripaludis S2		2	1
No Yes	Methanococcus vannielii SB		8	4
No Yes	Methanothermobacter thermautotrophicus Delta H		2	1
No Yes	Methanosphaera stadtmanae DSM 3091		2	1
No Yes	Methanobrevibacter ruminantium M1		4	2
No Yes	Methanobrevibacter smithii ATCC 35061		2	1
No Yes	uncultured methanogenic archaeon RC-I		2	1
No Yes	Aciduliprofundum boonei T469		4	2
No Yes	Hyperthermus butylicus DSM 5456		4	2
No Yes	Aeropyrum pernix K1		4	2
No Yes	Ignicoccus hospitalis KIN4/I		2	1
No Yes	Staphylothermus marinus F1		4	2
No Yes	Desulfurococcus kamchatkensis 1221n		4	2
No Yes	Metallosphaera sedula DSM 5348		4	2
No Yes	Sulfolobus tokodaii 7		4	2
No Yes	Sulfolobus islandicus Y.N.15.51		4	2
No Yes	Sulfolobus solfataricus P2		4	2
No Yes	Sulfolobus acidocaldarius DSM 639		4	2
No Yes	Thermofilum pendens Hrk 5		4	2
No Yes	Caldivirga maquilingensis IC-167		4	2
No Yes	Pyrobaculum calidifontis JCM 11548		5	3
No Yes	Pyrobaculum arsenaticum DSM 13514		6	4
No Yes	Pyrobaculum aerophilum IM2		5	3
No Yes	Pyrobaculum islandicum DSM 4184		6	4
No Yes	Thermoproteus neutrophilus V24Sta		6	4
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	59	42
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	53	39
No Yes	Cryptococcus neoformans var. grubii H99		22	14
No Yes	Cryptococcus neoformans B-3501A		21	14
No Yes	Ajellomyces dermatitidis ER-3		22	13
No Yes	Histoplasma capsulatum H143		19	12
No Yes	Histoplasma capsulatum H88		21	13
No Yes	Histoplasma capsulatum G186AR		22	13
No Yes	Paracoccidioides brasiliensis Pb01		17	11
No Yes	Paracoccidioides brasiliensis Pb03		20	11
No Yes	Coccidioides posadasii str. Silveira		20	13
No Yes	Coccidioides immitis RMSCC 3703		15	9
No Yes	Coccidioides immitis RMSCC 2394		20	12
No Yes	Coccidioides immitis H538.4		16	11
No Yes	Aspergillus fumigatus A1163		22	14
No Yes	Candida albicans WO-1		22	14
No Yes	Saccharomyces cerevisiae YJM789		30	20
No Yes	Saccharomyces cerevisiae RM11-1a		30	20
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	30	20
No Yes	Schizosaccharomyces pombe 972h-		24	13
No Yes	Batrachochytrium dendrobatidis JAM81		32	20
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	95	61
No Yes	Plasmodium falciparum HB3		8	5
No Yes	Plasmodium falciparum Dd2		6	4
No Yes	Pseudomonas putida F1		1	1
No Yes	Methanococcus maripaludis C6		2	1
No Yes	Methanococcus maripaludis C7		2	1
No Yes	Methanococcus maripaludis C5		2	1
No Yes	Sulfolobus islandicus Y.G.57.14		4	2
No Yes	Sulfolobus islandicus L.S.2.15		4	2
No Yes	Sulfolobus islandicus M.16.27		4	2
No Yes	Sulfolobus islandicus M.14.25		4	2
No Yes	Sulfolobus islandicus M.16.4		4	2
No Yes	Sulfolobus islandicus L.D.8.5		4	2
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	58	37
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		9	8
No Yes	Lotus japonicus (Early assembly)		16	9
No Yes	Prunus persica (Early draft)	Peach	77	50
No Yes	Manihot esculenta (Early draft)	Cassava	118	77
No Yes	Ricinus communis (Early assembly)	Castor bean	69	43
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	88	56
No Yes	Phoenix dactylifera (Early draft)	Date palm	59	36
No Yes	Trypanosoma vivax (Parial)		12	10
No Yes	Trypanosoma congolense (Partial)		13	10
No Yes	Toxoplasma gondii GT1 (Early assembly)		11	9
No Yes	Toxoplasma gondii VEG (Early assembly)		14	11
No Yes	Toxoplasma gondii RH (Archived)		14	11
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	65	43
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	62	41
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	44	32
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	61	41
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	63	44
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	69	45
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	56	37
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	54	39
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	40	25
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	60	37
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	64	41
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	45	32
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	52	34
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	70	47
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	46	35
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	53	36
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	57	38
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	52	37
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	61	41
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	37	23
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	57	37
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	67	42
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	42	32
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	57	36
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	57	35
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	57	40
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	51	36
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	46	30
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	56	38
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	37	25
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	49	33
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	47	33
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	46	30
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	68	44
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	54	36
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	57	38
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	56	36
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	54	36
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	54	34
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	66	43
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	66	45
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	75	53
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	68	47
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	75	54
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	82	56
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		24	15
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		36	21
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	19	14
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	59	42
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	33	21
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	30	19
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	35	22
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	40	28
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	40	28
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	100	62
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	132	81
No Yes	NCBI viral sequences (Viral)		32	19
No Yes	PDB chains (SCOP 1.73) (PDB)		49	27
No Yes	TargetDB (Targets)		204	148
No Yes	UniProt 15.0 (UniProt)		5744	3724
No Yes	UniProt 15.0 viral sequences (Viral)		46	27