SUPERFAMILY 1.73 HMM library and genome assignments server


ARM repeat superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Network of domain occurrence in all genomes


Assignment details

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Saccharomyces cerevisiae SGD (SGD) has 113 significant domains in 105 proteins.

     

Sequence ID   Evalue   Region   Family  
YAL016W   7.09e-84   31-626   HEAT repeat  
YBL004W   1.71e-44   83-266,1052-1119,1591-1680,1778-2263   Armadillo repeat  
YBL034C   7.14e-12   16-144,193-250,315-449,494-564,856-914,1321-1503   Exportin HEAT-like repeat  
YBL037W   1.27e-53   19-654   Clathrin adaptor core protein  
YBR017C   2.05e-120   5-884   Armadillo repeat  
YBR097W   7.76e-29   5-14,419-540,568-742,1430-1439   HEAT repeat  
YBR101C   1.79e-33   27-282   HspBP1 domain  
YBR136W   5.8e-09   46-59,537-754,942-997,1891-1974,2318-2356   B56-like  
YBR272C   2.34e-05   99-185,234-454   Mo25 protein  
YCR054C   7.2e-07   6-20,65-173,354-392,443-554   PBS lyase HEAT-like repeat  
YDL058W   2.06e-13   1-287,955-987,1335-1402,1768-1789   PBS lyase HEAT-like repeat  
YDL063C   3.2e-14   37-131,159-257,445-605   Plakophilin 1 helical region  
YDR141C   9.99e-09   15-53,81-194,256-315,736-818,871-941,1240-1405,1500-1587,1633-1653   Armadillo repeat  
YDR170C   4.23e-11   15-23,271-309,338-425,809-850,890-934,1082-1154,1400-1436,1483-1695,1911-2001   GUN4-associated domain  
YDR180W   4e-12   480-549,692-852,1015-1042,1094-1167,1203-1279,1461-1492   PBS lyase HEAT-like repeat  
YDR211W   1.13e-45   544-704   MIF4G domain-like  
YDR238C   2.13e-72   15-484,557-577   Clathrin adaptor core protein  
YDR325W   1.23e-21   12-62,102-344,418-469,646-762,827-900   Clathrin adaptor core protein  
YDR335W   7.98e-53   1-196,225-297,358-509,553-693,781-952,1098-1149,1197-1224   Armadillo repeat  
YDR395W   2.75e-95   3-940   Armadillo repeat  
YDR457W   1.33e-05   3-26,128-162,387-440,512-549,598-693,1284-1378   HspBP1 domain  
YDR496C   1.18e-67   139-472   Pumilio repeat  
  0.0647   26-77,510-569   GUN4-associated domain  
YEL013W   2.24e-74   87-454,564-578   Armadillo repeat  
YEL055C   1.64e-06   12-74,367-424,577-718,1001-1008   Clathrin adaptor core protein  
YER093C   3.55e-12   114-164,351-509,630-642,809-849,940-954,1362-1407   PBS lyase HEAT-like repeat  
YER110C   4.63e-120   3-624,832-1009,1063-1085   Armadillo repeat  
YFL007W   1.05e-05   6-24,249-296,573-698,1225-1498,1899-1919,2004-2038,2126-2138   Clathrin adaptor core protein  
YGL014W   2.08e-88   551-884   Pumilio repeat  
YGL016W   1.9e-25   1-157,187-313,397-767,861-1073   Armadillo repeat  
YGL049C   7.14e-44   556-808   MIF4G domain-like  
YGL083W   9.1e-05   45-93,321-377,469-581,798-804   HEAT repeat  
YGL178W   9.49e-72   214-531,563-588   Pumilio repeat  
YGL195W   5.52e-109   12-78,324-386,1374-2312,2618-2632   HEAT repeat  
  8.26e-05   1099-1130,1163-1386   Armadillo repeat  
YGL206C   4.34e-108   1188-1523   Clathrin heavy chain proximal leg segment  
  3.25e-94   448-785   Clathrin heavy-chain linker domain  
  6.31e-61   892-1187   Clathrin heavy chain proximal leg segment  
  2.07e-52   338-491   Clathrin heavy-chain linker domain  
  1.1e-15   804-931   Clathrin heavy-chain linker domain  
YGL238W   1.13e-175   1-959   Armadillo repeat  
YGL241W   1.86e-76   5-240,300-843,876-1003   Armadillo repeat  
YGR162W   2.43e-42   596-850   MIF4G domain-like  
YGR187C   1.39e-11   4-362   Leucine-rich repeat variant  
YGR218W   1.28e-116   16-266,336-377,419-717,784-1057   Exportin HEAT-like repeat  
YGR261C   3.25e-75   41-259,296-618,747-790   Clathrin adaptor core protein  
YGR278W   4.06e-26   12-207   MIF4G domain-like  
YHL030W   4.73e-58   20-130,324-358,443-476,590-628,802-889,948-1038,1128-1328,1358-1380,1419-1464,1545-1600,1718-1837   PBS lyase HEAT-like repeat  
YHR027C   1.42e-16   41-217,426-589,724-867,983-992   PBS lyase HEAT-like repeat  
YHR077C   2.13e-47   574-784   MIF4G domain-like  
  1.1e-44   375-561   MIF4G domain-like  
YHR099W   2.29e-27   5-149,290-360,783-843,891-959,1190-1229,1290-1333,1872-1938,2159-2317,2464-2484,2523-2592,3660-3694   Armadillo repeat  
YHR131C   4.35e-05   16-24,545-578,673-734,779-845   Clathrin adaptor core protein  
YHR186C   1.58e-21   1-25,564-644,706-838,879-952,1538-1552   PBS lyase HEAT-like repeat  
YIL017C   2.95e-17   20-69,280-349,480-675,712-781,878-914   PBS lyase HEAT-like repeat  
YIL026C   4.69e-05   127-179,372-489,1135-1149   Leucine-rich repeat variant  
YIL075C   4.49e-34   8-74,346-706   PBS lyase HEAT-like repeat  
YIL128W   2.83e-29   49-170,260-308,335-634,737-774,853-1019   Armadillo repeat  
YIL129C   1.53e-10   943-976,1160-1193,1383-1499,1687-2045,2077-2134,2350-2376   Mo25 protein  
YIL159W   2.4e-15   102-482   Diap1 N-terninal region-like  
YJL010C   2.66e-63   73-210,272-416,521-611   Pumilio repeat  
YJL109C   9.99e-24   84-94,925-953,984-1512,1569-1769   Armadillo repeat  
YJL207C   3.22e-10   1-32,140-207,266-351,388-407,489-531,977-1061,1397-1470,1760-1896   Armadillo repeat  
YJR005W   5.37e-77   1-598   Clathrin adaptor core protein  
YJR066W   1.19e-123   72-478,657-1196,1231-1462   HEAT repeat  
YJR070C   3.57e-40   74-307   PBS lyase HEAT-like repeat  
YJR091C   6.7e-64   576-911   Pumilio repeat  
YJR132W   8.31e-113   2-1047   Armadillo repeat  
YKL010C   7.37e-15   24-54,169-544   HEAT repeat  
YKL033W   3.29e-19   41-268,321-406,550-761,813-1016   Armadillo repeat  
YKL135C   2.16e-100   1-601   Clathrin adaptor core protein  
YKL189W   2.32e-109   21-357   Mo25 protein  
YKL203C   4.36e-137   84-424,590-1203,1238-1468   HEAT repeat  
YKL205W   2.25e-36   5-284,362-532,572-816,926-971,1047-1097   Armadillo repeat  
YLL013C   1.37e-93   527-869   Pumilio repeat  
YLR002C   2.64e-06   1-64,159-185,262-340,418-481,510-609   Armadillo repeat  
YLR045C   2.27e-22   3-216,322-355,404-543,851-867   Armadillo repeat  
YLR240W   1.44e-53   277-421,478-528   Phoshoinositide 3-kinase (PI3K) helical domain  
YLR249W   9.82e-48   5-214,249-427,567-641,715-800,910-968,1015-1035   Armadillo repeat  
YLR272C   2.85e-57   257-433,536-625,704-802,930-1146   Clathrin adaptor core protein  
YLR305C   5.03e-22   1351-1529   Phoshoinositide 3-kinase (PI3K) helical domain  
YLR336C   2.42e-33   324-543   MIF4G domain-like  
YLR347C   3.93e-189   1-858   Armadillo repeat  
YLR386W   6.86e-59   1-159,199-287,393-664   Armadillo repeat  
YMR076C   7.87e-20   62-184,233-436,547-576,642-768,1264-1277   PBS lyase HEAT-like repeat  
YMR125W   1.37e-63   355-551   MIF4G domain-like  
  5.01e-53   580-857   MIF4G domain-like  
  1.36e-06   43-205   MIF4G domain-like  
YMR185W   2.75e-08   13-102,240-262,364-390,454-473,524-544,627-966   Armadillo repeat  
YMR247C   5.23e-05   13-342,1003-1162,1334-1395,1552-1562   Regulatory subunit H of the V-type ATPase  
YMR259C   6.58e-09   14-161,278-307,482-515,684-789,880-965,1175-1303,1345-1412   PBS lyase HEAT-like repeat  
YMR288W   1.77e-82   226-770,808-968   HEAT repeat  
YMR308C   1.55e-126   4-593,815-1062   Armadillo repeat  
YNL014W   1.36e-48   10-214,249-374,423-433,567-639,715-800,910-968,1015-1036   Armadillo repeat  
YNL045W   1.82e-35   516-671   Leukotriene A4 hydrolase C-terminal domain  
YNL189W   3.45e-143   12-514   Armadillo repeat  
YNL267W   4.63e-16   12-117   Phoshoinositide 3-kinase (PI3K) helical domain  
YNL271C   3.5e-68   182-223,323-508,543-693   Diap1 N-terninal region-like  
YNL287W   1.96e-76   25-556,924-935   Clathrin adaptor core protein  
YNL297C   1.71e-09   38-175,228-329,743-891,926-948,1022-1131,1586-1627   Exportin HEAT-like repeat  
YOR014W   3.57e-150   291-626,653-709   B56-like  
YOR035C   7.92e-20   15-91,232-300,339-402,478-564,625-787   Armadillo repeat  
YOR112W   2.16e-15   3-8,273-541   GUN4-associated domain  
YOR160W   1.36e-68   1-201,242-888,924-961   Armadillo repeat  
YOR349W   2.68e-08   1-128,181-448,591-628,717-772,895-987   PBS lyase HEAT-like repeat  
YPL012W   2.66e-56   1-470,508-985,1205-1220   Clathrin adaptor core protein  
YPL082C   8.43e-68   17-90,300-650,906-987,1027-1321,1860-1867   Armadillo repeat  
YPL125W   8.82e-104   1-1025   Armadillo repeat  
YPL195W   8.04e-86   41-607,915-928   Clathrin adaptor core protein  
YPL226W   2.48e-17   178-487,1176-1182   Armadillo repeat  
YPR029C   3.78e-69   20-670   Clathrin adaptor core protein  
YPR036W   5.75e-141   2-478   Regulatory subunit H of the V-type ATPase  
YPR041W   4.2e-27   248-396   MIF4G domain-like  
YPR042C   5.54e-59   542-870   Pumilio repeat  
 
Weak hits:
YAL043C   0.067   72-129,159-258,696-784   Clathrin adaptor core protein  
YBL088C   0.0147   10-113,2770-2779   Plakophilin 1 helical region  
YBR275C   0.048   1-7,372-410,439-460,562-632,948-1007,1034-1246,1890-1905   GUN4-associated domain  
YDL073W   0.00155   16-142,407-520,933-956   Exportin HEAT-like repeat  
YDL112W   0.0275   7-25,145-304,362-416,527-557,1072-1164   B56-like  
YDR060W   0.000162   1-30,318-336,366-507,550-628,669-728,891-920,974-1008   HspBP1 domain  
YDR527W   0.0284   1-13,320-435   GUN4-associated domain  
YEL022W   0.000488   161-220,323-445,493-506,1255-1300,1329-1362   Armadillo repeat  
YGL092W   0.0353   4-20,879-1023,1191-1263   Leucine-rich repeat variant  
YGR245C   0.000915   14-26,106-185,349-468,746-759   Clathrin adaptor core protein  
YHR085W   0.000926   59-179,318-334   PBS lyase HEAT-like repeat  
YHR197W   0.00186   8-60,117-270,720-763   Mo25 protein  
YJR031C   0.0809   15-64,158-230,368-517,750-835,1023-1075,1253-1399   Diap1 N-terninal region-like  
YKL088W   0.0965   28-38,520-567   GUN4-associated domain  
YKL187C   0.000664   68-143,179-252,317-438,728-736   GUN4-associated domain  
YKR086W   0.0463   8-70   GUN4-associated domain  
YLR413W   0.00915   35-201,378-449,664-674   Armadillo repeat  
YMR212C   0.00508   65-187,245-310,750-770   Armadillo repeat  
YNL288W   0.000119   116-345   Armadillo repeat  
YOL025W   0.00122   24-70,466-659   GUN4-associated domain  
YOL081W   0.0026   23-211,1318-1483,1736-1780,2565-2598,2772-2873,3059-3075   HEAT repeat  
YPL161C   0.00288   44-237,331-423,588-630   HspBP1 domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   105095 105095
No Yes Homo sapiens 49_36k (all transcripts) Human 700 639
No Yes Pan troglodytes 49_21h (all transcripts) Chimpanzee 519 471
No Yes Gorilla gorilla 52_1 (all transcripts) Western Gorilla 240 227
No Yes Pongo pygmaeus 49_1 (all transcripts) Bornean orangutan 356 331
No Yes Macaca mulatta 49_10h (all transcripts) Rhesus monkey 551 512
No Yes Callithrix jacchus 56_3 (all transcripts) White-tufted-ear marmoset 679 627
No Yes Otolemur garnettii 49_1c (all transcripts) Small-eared galago 250 230
No Yes Microcebus murinus 49_1 (all transcripts) Gray mouse lemur 262 245
No Yes Tarsius syrichta 51_1 (all transcripts) Philippine tarsier 245 228
No Yes Rattus norvegicus 49_34s (all transcripts) Norway rat 483 447
No Yes Mus musculus 49_37b (all transcripts) House mouse 605 554
No Yes Spermophilus tridecemlineatus 49_1e (all transcripts) Thirteen-lined ground squirrel 239 219
No Yes Dipodomys ordii 51_1 (all transcripts) Ord's kangaroo rat 263 247
No Yes Cavia porcellus 51_3 (all transcripts) Domestic guinea pig 315 293
No Yes Oryctolagus cuniculus 49_1f (all transcripts) Rabbit 250 230
No Yes Ochotona princeps 49_1 (all transcripts) American pika 268 245
No Yes Tupaia belangeri 49_1d (all transcripts) Northern tree shrew 251 231
No Yes Sus scrofa 56_9 (all transcripts) Pig 284 268
No Yes Bos taurus 49_3f (all transcripts) Cattle 436 405
No Yes Vicugna pacos 51_1 (all transcripts) Alpaca 226 209
No Yes Tursiops truncatus 51_1 (all transcripts) Bottlenosed dolphin 291 271
No Yes Canis familiaris 49_2g (all transcripts) Dog 398 369
No Yes Felis catus 49_1c (all transcripts) Domestic cat 210 199
No Yes Equus caballus 49_2 (all transcripts) Horse 396 368
No Yes Myotis lucifugus 49_1e (all transcripts) Little brown bat 256 241
No Yes Pteropus vampyrus 51_1 (all transcripts) Large flying fox 298 276
No Yes Sorex araneus 49_1c (all transcripts) European shrew 241 219
No Yes Erinaceus europaeus 49_1c (all transcripts) Western European hedgehog 248 232
No Yes Procavia capensis 51_1 (all transcripts) Cape rock hyrax 266 246
No Yes Loxodonta africana 49_1d (all transcripts) African savanna elephant 248 232
No Yes Echinops telfairi 49_1e (all transcripts) Small Madagascar hedgehog 257 236
No Yes Dasypus novemcinctus 49_1f (all transcripts) Nine-banded armadillo 223 202
No Yes Macropus eugenii 55_1 (all transcripts) Tammar wallaby 254 238
No Yes Monodelphis domestica 49_5d (all transcripts) Gray short-tailed opossum 540 489
No Yes Ornithorhynchus anatinus 49_1f (all transcripts) Platypus 427 401
No Yes Anolis carolinensis 55_1a (all transcripts) Green anole 302 273
No Yes Taeniopygia guttata 57_1c (all transcripts) Zebra finch 343 311
No Yes Meleagris gallopavo 57_2 (all transcripts) Turkey 304 280
No Yes Gallus gallus 49_2g (all transcripts) Chicken 390 363
No Yes Xenopus laevis African clawed frog 557 510
No Yes Xenopus tropicalis 49_41i (all transcripts) Western clawed frog 365 337
No Yes Danio rerio 49_7c (all transcripts) Zebrafish 407 383
No Yes Gasterosteus aculeatus 49_1f (all transcripts) Three-spined stickleback 392 356
No Yes Oryzias latipes 49_1e (all transcripts) Japanese medaka 373 340
No Yes Tetraodon nigroviridis 49_1k (all transcripts) Spotted green pufferfish 347 323
No Yes Takifugu rubripes 49_4i (all transcripts) Torafugu 790 719
No Yes Branchiostoma floridae 1.0 Florida lancelet 481 454
No Yes Ciona savignyi 49_2f (all transcripts)   416 365
No Yes Ciona intestinalis 49_2i (all transcripts)   364 324
No Yes Strongylocentrotus purpuratus Purple sea urchin 531 517
No Yes Helobdella robusta   202 188
No Yes Capitella sp. I   251 235
No Yes Bombyx mori Domestic silkworm 177 168
No Yes Nasonia vitripennis Jewel wasp 169 157
No Yes Apis mellifera 37.2d (all transcripts) (Not maintained) Honey bee 362 343
No Yes Drosophila grimshawi 1.3   189 170
No Yes Drosophila willistoni 1.3   197 181
No Yes Drosophila pseudoobscura 2.3   178 164
No Yes Drosophila persimilis 1.3   177 163
No Yes Drosophila yakuba 1.3   197 176
No Yes Drosophila simulans 1.3   158 148
No Yes Drosophila sechellia 1.3   183 165
No Yes Drosophila melanogaster Ensembl 49_54 (all transcripts) Fruit fly 316 273
No Yes Drosophila erecta 1.3   186 170
No Yes Drosophila ananassae 1.3   195 179
No Yes Drosophila virilis 1.2   180 164
No Yes Drosophila mojavensis 1.3   178 166
No Yes Aedes aegypti 49_1b (all transcripts) Yellow fever mosquito 221 200
No Yes Culex pipiens quinquefasciatus Southern house mosquito 192 178
No Yes Anopheles gambiae 49_3j (all transcripts) African malaria mosquito 183 167
No Yes Tribolium castaneum 3.0 Red flour beetle 208 192
No Yes Pediculus humanus corporis (Early assembly) Human body louse 190 173
No Yes Acyrthosiphon pisum Pea aphid 194 174
No Yes Daphnia pulex Common water flea 326 308
No Yes Ixodes scapularis (Preliminary) Black-legged tick 172 157
No Yes Lottia gigantea   254 234
No Yes Pristionchus pacificus   171 163
No Yes Meloidogyne incognita Southern root-knot nematode 147 135
No Yes Meloidogyne hapla   122 113
No Yes Brugia malayi Agent of lymphatic filariasis 100 94
No Yes Caenorhabditis japonica   180 170
No Yes Caenorhabditis brenneri   142 129
No Yes Caenorhabditis remanei   206 192
No Yes Caenorhabditis elegans Ensembl 49_180a (all transcripts) Nematode 254 238
No Yes Caenorhabditis briggsae 2   163 155
No Yes Schistosoma mansoni   211 186
No Yes Nematostella vectensis 1.0 Starlet sea anemone 288 274
No Yes Hydra magnipapillata   200 186
No Yes Trichoplax adhaerens   221 207
No Yes Proterospongia sp. ATCC 50818   221 210
No Yes Monosiga brevicollis   167 160
No Yes Capsaspora owczarzaki ATCC 30864   184 169
No Yes Malassezia globosa CBS 7966   115 104
No Yes Ustilago maydis   108 99
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   120 114
No Yes Melampsora laricis-populina   124 115
No Yes Sporobolomyces roseus IAM 13481   93 86
No Yes Serpula lacrymans var. lacrymans S7.9   123 111
No Yes Coprinopsis cinerea okayama7 130   132 120
No Yes Pleurotus ostreatus Oyster mushroom 134 125
No Yes Laccaria bicolor S238N-H82   147 139
No Yes Agaricus bisporus var. bisporus   127 116
No Yes Schizophyllum commune   123 114
No Yes Heterobasidion annosum   117 110
No Yes Phanerochaete chrysosporium RP-78 2.1   126 116
No Yes Postia placenta   176 162
No Yes Tremella mesenterica   116 108
No Yes Cryptococcus neoformans JEC21   113 105
No Yes Magnaporthe grisea 70-15   120 113
No Yes Podospora anserina   121 112
No Yes Sporotrichum thermophile ATCC 42464   121 113
No Yes Thielavia terrestris NRRL 8126   119 110
No Yes Chaetomium globosum CBS 148.51   117 109
No Yes Neurospora tetrasperma   122 113
No Yes Neurospora discreta FGSC 8579   121 113
No Yes Neurospora crassa OR74A   119 110
No Yes Cryphonectria parasitica Chestnut blight fungus 124 118
No Yes Fusarium oxysporum f. sp. lycopersici 4286   129 123
No Yes Nectria haematococca mpVI   118 111
No Yes Fusarium verticillioides 7600   121 114
No Yes Fusarium graminearum   121 114
No Yes Trichoderma atroviride   124 118
No Yes Trichoderma reesei 1.2   122 115
No Yes Trichoderma virens Gv29-8   121 112
No Yes Verticillium dahliae VdLs.17   111 105
No Yes Verticillium albo-atrum VaMs.102   104 99
No Yes Botrytis cinerea B05.10   116 109
No Yes Sclerotinia sclerotiorum   114 108
No Yes Alternaria brassicicola   119 113
No Yes Pyrenophora tritici-repentis   118 109
No Yes Cochliobolus heterostrophus   118 110
No Yes Stagonospora nodorum   113 106
No Yes Mycosphaerella fijiensis CIRAD86   107 99
No Yes Mycosphaerella graminicola IPO323   117 109
No Yes Ajellomyces dermatitidis SLH14081   115 108
No Yes Histoplasma capsulatum class NAmI strain WU24   110 104
No Yes Microsporum gypseum   114 104
No Yes Arthroderma benhamiae CBS 112371   113 106
No Yes Microsporum canis CBS 113480   112 105
No Yes Trichophyton equinum CBS 127.97   110 103
No Yes Trichophyton verrucosum HKI 0517   111 104
No Yes Trichophyton tonsurans CBS 112818   112 105
No Yes Trichophyton rubrum CBS 118892   114 106
No Yes Paracoccidioides brasiliensis Pb18   116 109
No Yes Coccidioides posadasii RMSCC 3488   116 109
No Yes Coccidioides immitis RS   115 107
No Yes Uncinocarpus reesii 1704   118 110
No Yes Aspergillus fumigatus Af293   112 106
No Yes Neosartorya fischeri NRRL 181   120 112
No Yes Penicillium chrysogenum Wisconsin 54-1255   123 114
No Yes Penicillium marneffei ATCC 18224   123 116
No Yes Aspergillus carbonarius ITEM 5010   117 110
No Yes Aspergillus terreus NIH2624   117 110
No Yes Aspergillus oryzae RIB40   119 112
No Yes Aspergillus niger ATCC 1015   85 82
No Yes Aspergillus flavus NRRL3357   114 108
No Yes Aspergillus clavatus NRRL 1   121 112
No Yes Aspergillus nidulans FGSC A4   118 111
No Yes Tuber melanosporum Vittad Perigord truffle 125 115
No Yes Candida dubliniensis CD36   110 103
No Yes Candida tropicalis MYA-3404   112 105
No Yes Candida parapsilosis   109 101
No Yes Candida albicans SC5314   120 113
No Yes Yarrowia lipolytica CLIB122   114 107
No Yes Candida lusitaniae ATCC 42720   110 107
No Yes Vanderwaltozyma polyspora DSM 70294   113 104
No Yes Candida glabrata CBS138   115 106
No Yes Kluyveromyces thermotolerans CBS 6340   106 96
No Yes Lachancea kluyveri   109 101
No Yes Kluyveromyces waltii   103 93
No Yes Lodderomyces elongisporus NRRL YB-4239   109 102
No Yes Ashbya gossypii ATCC 10895   109 101
No Yes Debaromyces hansenii   113 103
No Yes Zygosaccharomyces rouxii   105 97
No Yes Saccharomyces mikatae MIT   119 111
No Yes Saccharomyces paradoxus MIT   119 109
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 113 105
No Yes Saccharomyces bayanus MIT   119 111
No Yes Candida guilliermondii ATCC 6260   117 109
No Yes Pichia stipitis CBS 6054   105 98
No Yes Pichia pastoris GS115   111 100
No Yes Kluyveromyces lactis   109 100
No Yes Schizosaccharomyces octosporus yFS286   131 123
No Yes Schizosaccharomyces japonicus yFS275   136 128
No Yes Schizosaccharomyces pombe Fission yeast 134 126
No Yes Allomyces macrogynus ATCC 38327   288 274
No Yes Rhizopus oryzae RA 99-880   208 198
No Yes Phycomyces blakesleeanus   182 173
No Yes Mucor circinelloides   175 168
No Yes Encephalitozoon intestinalis   37 37
No Yes Encephalitozoon cuniculi   36 36
No Yes Spizellomyces punctatus DAOM BR117   161 152
No Yes Batrachochytrium dendrobatidis JEL423   208 198
No Yes Dictyostelium discoideum   220 209
No Yes Dictyostelium purpureum   220 209
No Yes Entamoeba dispar   218 212
No Yes Entamoeba invadens   214 208
No Yes Entamoeba histolytica 1   236 228
No Yes Arabidopsis lyrata Lyrate rockcress 399 360
No Yes Arabidopsis thaliana 9 (all transcripts) Thale cress 453 406
No Yes Carica papaya Papaya 282 265
No Yes Medicago truncatula Barrel medic 280 254
No Yes Glycine max Soybean 657 582
No Yes Cucumis sativus Cucumber 453 424
No Yes Populus trichocarpa 1.1 Black cottonwood 474 438
No Yes Vitis vinifera Wine grape 350 318
No Yes Brachypodium distachyon   422 388
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 471 435
No Yes Zea mays subsp. mays Maize 638 595
No Yes Sorghum bicolor Sorghum 349 318
No Yes Selaginella moellendorffii   522 474
No Yes Physcomitrella patens subsp. patens   373 331
No Yes Coccomyxa sp. C-169   143 131
No Yes Chlorella sp. NC64A   144 134
No Yes Chlorella vulgaris   152 139
No Yes Volvox carteri f. nagariensis   175 163
No Yes Chlamydomonas reinhardtii 4.0   149 140
No Yes Ostreococcus sp. RCC809   127 115
No Yes Ostreococcus lucimarinus CCE9901   126 118
No Yes Ostreococcus tauri   119 110
No Yes Micromonas sp. RCC299   138 130
No Yes Micromonas pusilla CCMP1545   141 133
No Yes Cyanidioschyzon merolae   88 81
No Yes Giardia lamblia   57 54
No Yes Trypanosoma cruzi strain CL Brener   256 239
No Yes Trypanosoma brucei   135 123
No Yes Leishmania mexicana   117 111
No Yes Leishmania major strain Friedlin   119 113
No Yes Leishmania infantum JPCM5   117 112
No Yes Leishmania braziliensis MHOM/BR/75/M2904   109 104
No Yes Aureococcus anophagefferens   160 149
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 223 195
No Yes Phytophthora sojae 1.1   233 199
No Yes Phytophthora infestans T30-4   264 231
No Yes Phytophthora capsici   174 158
No Yes Phaeodactylum tricornutum   127 116
No Yes Fragilariopsis cylindrus   202 186
No Yes Thalassiosira pseudonana   137 126
No Yes Paramecium tetraurelia   486 466
No Yes Tetrahymena thermophila SB210 1   242 227
No Yes Babesia bovis T2Bo   74 67
No Yes Theileria parva   70 65
No Yes Theileria annulata   66 60
No Yes Plasmodium falciparum 3D7   75 65
No Yes Plasmodium vivax SaI-1   77 68
No Yes Plasmodium knowlesi strain H   75 66
No Yes Plasmodium yoelii ssp. yoelii 1   75 67
No Yes Plasmodium chabaudi   91 88
No Yes Plasmodium berghei ANKA   86 79
No Yes Cryptosporidium hominis   64 58
No Yes Cryptosporidium muris   87 77
No Yes Cryptosporidium parvum Iowa II   78 68
No Yes Neospora caninum Nc-Liverpool   109 93
No Yes Neospora caninum   105 91
No Yes Toxoplasma gondii ME49   101 88
No Yes Naegleria gruberi   211 203
No Yes Trichomonas vaginalis   1115 1092
No Yes Guillardia theta   3 3
No Yes Emiliania huxleyi CCMP1516   307 293
No Yes Acholeplasma laidlawii PG-8A   1 1
No Yes Mycoplasma arthritidis 158L3-1   1 1
No Yes Brachyspira hyodysenteriae WA1   5 5
No Yes Leptospira borgpetersenii ser. Hardjo-bovis L550   8 7
No Yes Leptospira interrogans ser. Lai 56601   10 9
No Yes Leptospira biflexa ser. Patoc Patoc 1 (Paris)   7 7
No Yes Treponema pallidum ssp. pallidum Nichols   2 2
No Yes Treponema denticola ATCC 35405   4 4
No Yes Borrelia garinii PBi   1 1
No Yes Borrelia afzelii PKo   1 1
No Yes Borrelia burgdorferi B31   1 1
No Yes Borrelia recurrentis A1   1 1
No Yes Borrelia duttonii Ly   1 1
No Yes Borrelia turicatae 91E135   1 1
No Yes Borrelia hermsii DAH   1 1
No Yes Rhodopirellula baltica SH 1   20 19
No Yes Pirellula staleyi DSM 6068   40 39
No Yes Bifidobacterium animalis ssp. lactis AD011   1 1
No Yes Bifidobacterium dentium Bd1   1 1
No Yes Bifidobacterium adolescentis ATCC 15703   1 1
No Yes Kineococcus radiotolerans SRS30216   1 1
No Yes Catenulispora acidiphila DSM 44928   7 7
No Yes Stackebrandtia nassauensis DSM 44728   2 2
No Yes Acidothermus cellulolyticus 11B   1 1
No Yes Nakamurella multipartita DSM 44233   3 3
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Frankia alni ACN14a   2 2
No Yes Thermomonospora curvata DSM 43183   8 8
No Yes Streptosporangium roseum DSM 43021   11 10
No Yes Streptomyces griseus ssp. griseus NBRC 13350   8 8
No Yes Streptomyces avermitilis MA-4680   4 4
No Yes Streptomyces scabiei 87.22   10 9
No Yes Streptomyces coelicolor A3(2)   5 5
No Yes Actinosynnema mirum DSM 43827   8 8
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Kribbella flavida DSM 17836   5 5
No Yes Nocardioides sp. JS614   1 1
No Yes Salinispora arenicola CNS-205   4 4
No Yes Salinispora tropica CNB-440   5 5
No Yes Gordonia bronchialis DSM 43247   3 3
No Yes Rhodococcus jostii RHA1   5 5
No Yes Rhodococcus opacus B4   5 5
No Yes Rhodococcus erythropolis PR4   6 6
No Yes Nocardia farcinica IFM 10152   5 5
No Yes Mycobacterium abscessus   4 4
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium avium ssp. paratuberculosis K-10   1 1
No Yes Corynebacterium efficiens YS-314   2 2
No Yes Corynebacterium glutamicum ATCC 13032 Kitasato   4 4
No Yes Sanguibacter keddieii DSM 10542   2 2
No Yes Beutenbergia cavernae DSM 12333   3 3
No Yes Leifsonia xyli ssp. xyli CTCB07   1 1
No Yes Clavibacter michiganensis ssp. michiganensis NCPPB 382   4 4
No Yes Jonesia denitrificans DSM 20603   1 1
No Yes Kocuria rhizophila DC2201   2 2
No Yes Arthrobacter sp. FB24   4 4
No Yes Arthrobacter chlorophenolicus A6   4 4
No Yes Arthrobacter aurescens TC1   4 4
No Yes Renibacterium salmoninarum ATCC 33209   1 1
No Yes Micrococcus luteus NCTC 2665   2 2
No Yes Cryptobacterium curtum DSM 15641   1 1
No Yes Eggerthella lenta DSM 2243   1 1
No Yes Slackia heliotrinireducens DSM 20476   4 3
No Yes Atopobium parvulum DSM 20469   2 2
No Yes Conexibacter woesei DSM 14684   2 2
No Yes Rubrobacter xylanophilus DSM 9941   2 2
No Yes Acidimicrobium ferrooxidans DSM 10331   1 1
No Yes Denitrovibrio acetiphilus DSM 12809   4 4
No Yes Deferribacter desulfuricans SSM1   3 2
No Yes Kosmotoga olearia TBF 19.5.1   3 3
No Yes Petrotoga mobilis SJ95   2 2
No Yes Fervidobacterium nodosum Rt17-B1   1 1
No Yes Thermosipho melanesiensis BI429   2 2
No Yes Thermosipho africanus TCF52B   2 2
No Yes Thermotoga lettingae TMO   1 1
No Yes Thermotoga sp. RQ2   1 1
No Yes Thermotoga naphthophila RKU-10   1 1
No Yes Thermotoga petrophila RKU-1   1 1
No Yes Thermotoga neapolitana DSM 4359   1 1
No Yes Thermotoga maritima MSB8   1 1
No Yes Dehalococcoides sp. CBDB1   3 3
No Yes Dehalococcoides ethenogenes 195   3 3
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Sphaerobacter thermophilus DSM 20745   1 1
No Yes Herpetosiphon aurantiacus ATCC 23779   14 13
No Yes Roseiflexus sp. RS-1   12 12
No Yes Roseiflexus castenholzii DSM 13941   8 8
No Yes Chloroflexus sp. Y-400-fl   8 8
No Yes Chloroflexus aggregans DSM 9485   9 9
No Yes Chloroflexus aurantiacus J-10-fl   9 9
No Yes Sulfurihydrogenibium azorense Az-Fu1   1 1
No Yes Hydrogenobaculum sp. Y04AAS1   1 1
No Yes Thermocrinis albus DSM 14484   1 1
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Gemmatimonas aurantiaca T-27   12 11
No Yes Fibrobacter succinogenes ssp. succinogenes S85   2 2
No Yes Candidatus Koribacter versatilis Ellin345   2 2
No Yes Candidatus Solibacter usitatus Ellin6076   24 24
No Yes Acidobacterium capsulatum ATCC 51196   1 1
No Yes Elusimicrobium minutum Pei191   2 2
No Yes uncultured Termite group 1 bacterium phylotype Rs-D17   1 1
No Yes Pelodictyon phaeoclathratiforme BU-1   2 2
No Yes Chlorobium chlorochromatii CaD3   1 1
No Yes Chlorobium phaeobacteroides DSM 266   1 1
No Yes Chlorobium phaeovibrioides DSM 265   1 1
No Yes Chlorobium limicola DSM 245   1 1
No Yes Chlorobaculum parvum NCIB 8327   1 1
No Yes Chlorobium tepidum TLS   1 1
No Yes Chloroherpeton thalassium ATCC 35110   2 2
No Yes Prosthecochloris aestuarii DSM 271   1 1
No Yes Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2   1 1
No Yes Prevotella ruminicola 23   2 2
No Yes Parabacteroides distasonis ATCC 8503   4 3
No Yes Porphyromonas gingivalis W83   3 3
No Yes Bacteroides vulgatus ATCC 8482   2 2
No Yes Bacteroides thetaiotaomicron VPI-5482   4 4
No Yes Bacteroides fragilis NCTC 9343   2 2
No Yes Candidatus Amoebophilus asiaticus 5a2   4 4
No Yes Salinibacter ruber DSM 13855   4 3
No Yes Rhodothermus marinus DSM 4252   3 3
No Yes Chitinophaga pinensis DSM 2588   14 13
No Yes Dyadobacter fermentans DSM 18053   25 22
No Yes Cytophaga hutchinsonii ATCC 33406   5 5
No Yes Spirosoma linguale DSM 74   13 13
No Yes Pedobacter heparinus DSM 2366   5 5
No Yes Zunongwangia profunda SM-A87   3 3
No Yes Gramella forsetii KT0803   2 2
No Yes Robiginitalea biformata HTCC2501   6 5
No Yes Flavobacteriaceae bacterium 3519-10   2 2
No Yes Capnocytophaga ochracea DSM 7271   3 3
No Yes Flavobacterium johnsoniae UW101   3 3
No Yes Dictyoglomus turgidum DSM 6724   1 1
No Yes Candidatus Protochlamydia amoebophila UWE25   3 2
No Yes Chlamydophila pneumoniae TW-183   3 3
No Yes Chlamydophila caviae GPIC   3 3
No Yes Chlamydophila felis Fe/C-56   3 3
No Yes Chlamydophila abortus S26/3   4 4
No Yes Chlamydia muridarum Nigg   3 3
No Yes Chlamydia trachomatis D/UW-3/CX   3 3
No Yes Coraliomargarita akajimensis DSM 45221   6 4
No Yes Opitutus terrae PB90-1   2 2
No Yes Methylacidiphilum infernorum V4   1 1
No Yes Akkermansia muciniphila ATCC BAA-835   1 1
No Yes Thermodesulfovibrio yellowstonii DSM 11347   4 4
No Yes Streptobacillus moniliformis DSM 12112   1 1
No Yes Sebaldella termitidis ATCC 33386   2 2
No Yes Leptotrichia buccalis DSM 1135   2 2
No Yes Fusobacterium nucleatum ssp. nucleatum ATCC 25586   2 2
No Yes Thermobaculum terrenum ATCC BAA-798   4 4
No Yes Deinococcus deserti VCD115   3 2
No Yes Deinococcus geothermalis DSM 11300   3 2
No Yes Deinococcus radiodurans R1   5 3
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Natranaerobius thermophilus JW/NM-WN-LF   1 1
No Yes Symbiobacterium thermophilum IAM 14863   2 2
No Yes Finegoldia magna ATCC 29328   1 1
No Yes Clostridiales genomosp. BVAB3 UPII9-5   1 1
No Yes Anaerocellum thermophilum DSM 6725   3 3
No Yes Candidatus Desulforudis audaxviator MP104C   5 5
No Yes Desulfitobacterium hafniense Y51   1 1
No Yes Desulfotomaculum reducens MI-1   2 2
No Yes Desulfotomaculum acetoxidans DSM 771   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Eubacterium eligens ATCC 27750   1 1
No Yes Syntrophomonas wolfei ssp. wolfei Goettingen   4 3
No Yes Heliobacterium modesticaldum Ice1   3 3
No Yes Alkaliphilus oremlandii OhILAs   5 5
No Yes Alkaliphilus metalliredigens QYMF   6 6
No Yes Clostridium phytofermentans ISDg   2 2
No Yes Clostridium novyi NT   1 1
No Yes Clostridium kluyveri DSM 555   1 1
No Yes Clostridium cellulolyticum H10   2 2
No Yes Clostridium beijerinckii NCIMB 8052   1 1
No Yes Clostridium thermocellum ATCC 27405   3 3
No Yes Clostridium tetani E88   2 2
No Yes Clostridium difficile 630   4 4
No Yes Clostridium botulinum A ATCC 3502   3 3
No Yes Clostridium acetobutylicum ATCC 824   2 2
No Yes Acidaminococcus fermentans DSM 20731   1 1
No Yes Caldicellulosiruptor saccharolyticus DSM 8903   1 1
No Yes Carboxydothermus hydrogenoformans Z-2901   1 1
No Yes Moorella thermoacetica ATCC 39073   3 3
No Yes Ammonifex degensii KC4   3 3
No Yes Thermoanaerobacter pseudethanolicus ATCC 33223   2 2
No Yes Thermoanaerobacter sp. X514   3 3
No Yes Thermoanaerobacter tengcongensis MB4   3 3
No Yes Thermoanaerobacter italicus Ab9   1 1
No Yes Halothermothrix orenii H 168   3 3
No Yes Enterococcus faecalis V583   2 2
No Yes Lactobacillus casei ATCC 334   3 3
No Yes Lactobacillus crispatus ST1   2 2
No Yes Lactobacillus johnsonii NCC 533   1 1
No Yes Lactobacillus salivarius UCC118   1 1
No Yes Lactobacillus sakei ssp. sakei 23K   3 3
No Yes Lactobacillus gasseri ATCC 33323   1 1
No Yes Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842   2 2
No Yes Lactobacillus brevis ATCC 367   1 1
No Yes Lactobacillus acidophilus NCFM   2 2
No Yes Lactococcus lactis ssp. lactis Il1403   2 2
No Yes Streptococcus gallolyticus UCN34   1 1
No Yes Streptococcus mitis B6   2 2
No Yes Streptococcus uberis 0140J   1 1
No Yes Streptococcus agalactiae NEM316   1 1
No Yes Streptococcus mutans UA159   2 2
No Yes Streptococcus thermophilus LMG 18311 (Older strain)   1 1
No Yes Streptococcus suis 05ZYH33   3 3
No Yes Streptococcus sanguinis SK36   2 2
No Yes Streptococcus gordonii Challis subCH1   1 1
No Yes Exiguobacterium sp. AT1b   2 2
No Yes Exiguobacterium sibiricum 255-15   4 4
No Yes Bacillus tusciae DSM 2912   1 1
No Yes Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446   1 1
No Yes Brevibacillus brevis NBRC 100599   6 6
No Yes Paenibacillus sp. JDR-2   8 8
No Yes Listeria welshimeri ser. 6b SLCC5334   5 5
No Yes Listeria innocua Clip11262   2 2
No Yes Listeria seeligeri ser. 1/2b SLCC3954   2 2
No Yes Listeria monocytogenes EGD-e   2 2
No Yes Lysinibacillus sphaericus C3-41   6 6
No Yes Oceanobacillus iheyensis HTE831   3 3
No Yes Anoxybacillus flavithermus WK1   3 3
No Yes Geobacillus sp. WCH70   2 2
No Yes Geobacillus thermodenitrificans NG80-2   2 2
No Yes Geobacillus kaustophilus HTA426   3 3
No Yes Bacillus subtilis ssp. subtilis 168   4 4
No Yes Bacillus licheniformis ATCC 14580   3 3
No Yes Bacillus amyloliquefaciens FZB42   3 3
No Yes Bacillus halodurans C-125   3 3
No Yes Bacillus weihenstephanensis KBAB4   7 7
No Yes Bacillus thuringiensis ser. konkukian 97-27   5 5
No Yes Bacillus cereus ATCC 14579   6 6
No Yes Bacillus anthracis Ames Ancestor   7 7
No Yes Bacillus pseudofirmus OF4   3 3
No Yes Bacillus clausii KSM-K16   5 5
No Yes Bacillus pumilus SAFR-032   3 3
No Yes Bacillus megaterium QM B1551   5 5
No Yes Macrococcus caseolyticus JCSC5402   1 1
No Yes Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305   2 2
No Yes Staphylococcus lugdunensis HKU09-01   1 1
No Yes Staphylococcus haemolyticus JCSC1435   2 2
No Yes Staphylococcus epidermidis RP62A   1 1
No Yes Staphylococcus carnosus ssp. carnosus TM300   2 2
No Yes Staphylococcus aureus ssp. aureus NCTC 8325   2 2
No Yes Arcobacter butzleri RM4018   1 1
No Yes Campylobacter curvus 525.92   2 2
No Yes Campylobacter concisus 13826   1 1
No Yes Helicobacter hepaticus ATCC 51449   1 1
No Yes Nitratiruptor sp. SB155-2   1 1
No Yes Bdellovibrio bacteriovorus HD100   3 3
No Yes Syntrophus aciditrophicus SB   1 1
No Yes Syntrophobacter fumaroxidans MPOB   7 6
No Yes Desulfotalea psychrophila LSv54   5 5
No Yes Desulfatibacillum alkenivorans AK-01   11 9
No Yes Desulfobacterium autotrophicum HRM2   6 6
No Yes Desulfococcus oleovorans Hxd3   7 7
No Yes Desulfomicrobium baculatum DSM 4028   4 4
No Yes Lawsonia intracellularis PHE/MN1-00   2 1
No Yes Desulfovibrio magneticus RS-1   4 3
No Yes Desulfovibrio vulgaris Hildenborough   3 2
No Yes Desulfovibrio salexigens DSM 2638   6 5
No Yes Desulfovibrio desulfuricans ssp. desulfuricans G20   2 2
No Yes Pelobacter propionicus DSM 2379   2 2
No Yes Pelobacter carbinolicus DSM 2380   3 3
No Yes Geobacter uraniireducens Rf4   4 4
No Yes Geobacter sp. FRC-32   6 6
No Yes Geobacter lovleyi SZ   3 2
No Yes Geobacter bemidjiensis Bem   4 4
No Yes Geobacter sulfurreducens PCA   7 6
No Yes Geobacter metallireducens GS-15   5 5
No Yes Haliangium ochraceum DSM 14365   31 24
No Yes Sorangium cellulosum So ce 56   53 44
No Yes Anaeromyxobacter sp. Fw109-5   11 10
No Yes Anaeromyxobacter dehalogenans 2CP-C   8 8
No Yes Myxococcus xanthus DK 1622   43 39
No Yes Magnetococcus sp. MC-1   6 6
No Yes Sideroxydans lithotrophicus ES-1   3 3
No Yes Dechloromonas aromatica RCB   3 3
No Yes Thauera sp. MZ1T   2 2
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Methylovorus sp. SIP3-4   1 1
No Yes Thiobacillus denitrificans ATCC 25259   1 1
No Yes Candidatus Accumulibacter phosphatis clade IIA UW-1   2 2
No Yes Leptothrix cholodnii SP-6   3 3
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus taiwanensis   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum GMI1000   5 4
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia sp. 383   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Burkholderia xenovorans LB400   2 2
No Yes Burkholderia glumae BGR1   2 2
No Yes Delftia acidovorans SPH-1   1 1
No Yes Polaromonas sp. JS666   2 2
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Variovorax paradoxus S110   2 2
No Yes Rhodoferax ferrireducens T118   2 2
No Yes Comamonas sp. CNB-1   1 1
No Yes Herminiimonas arsenicoxydans   1 1
No Yes Janthinobacterium sp. Marseille   3 3
No Yes Bordetella petrii DSM 12804   1 1
No Yes Bordetella pertussis Tohama I   1 1
No Yes Bordetella parapertussis 12822   1 1
No Yes Bordetella bronchiseptica RB50   1 1
No Yes Caulobacter sp. K31   3 3
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Sphingopyxis alaskensis RB2256   2 2
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Sphingomonas wittichii RW1   1 1
No Yes Maricaulis maris MCS10   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Jannaschia sp. CCS1   1 1
No Yes Ruegeria sp. TM1040   3 3
No Yes Ruegeria pomeroyi DSS-3   2 2
No Yes Rhodobacter sphaeroides 2.4.1   2 2
No Yes Rhodobacter capsulatus SB1003   2 2
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Magnetospirillum magneticum AMB-1   4 4
No Yes Rhodospirillum centenum SW   4 4
No Yes Rhodospirillum rubrum ATCC 11170   3 3
No Yes Azospirillum sp. B510   3 3
No Yes Granulibacter bethesdensis CGDNIH1   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Ehrlichia ruminantium Welgevonden   1 1
No Yes Orientia tsutsugamushi Boryong   1 1
No Yes Rickettsia bellii RML369-C   2 2
No Yes Rickettsia felis URRWXCal2   6 6
No Yes Rickettsia massiliae MTU5   1 1
No Yes Rickettsia africae ESF-5   1 1
No Yes Rickettsia akari Hartford   1 1
No Yes Rickettsia rickettsii Sheila Smith   2 2
No Yes Rickettsia conorii Malish 7   2 2
No Yes Wolbachia endosymbiont of Drosophila melanogaster (Genus only)   1 1
No Yes Xanthobacter autotrophicus Py2   5 5
No Yes Azorhizobium caulinodans ORS 571   2 2
No Yes Methylobacterium chloromethanicum CM4   2 2
No Yes Methylobacterium extorquens PA1   1 1
No Yes Methylobacterium sp. 4-46   3 3
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium nodulans ORS 2060   4 4
No Yes Methylobacterium radiotolerans JCM 2831   2 2
No Yes Ochrobactrum anthropi ATCC 49188   1 1
No Yes Brucella abortus bv. 1 9-941   1 1
No Yes Sinorhizobium medicae WSM419   2 2
No Yes Sinorhizobium meliloti 1021   2 2
No Yes Rhizobium etli CFN 42   2 2
No Yes Rhizobium sp. NGR234   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   2 2
No Yes Agrobacterium vitis S4   1 1
No Yes Agrobacterium tumefaciens C58   2 2
No Yes Parvibaculum lavamentivorans DS-1   1 1
No Yes Mesorhizobium loti MAFF303099   3 3
No Yes Methylocella silvestris BL2   2 2
No Yes Beijerinckia indica ssp. indica ATCC 9039   2 2
No Yes Rhodopseudomonas palustris CGA009   2 2
No Yes Nitrobacter winogradskyi Nb-255   2 2
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Bradyrhizobium sp. ORS278   2 2
No Yes Bradyrhizobium japonicum USDA 110   2 2
No Yes Acidithiobacillus ferrooxidans ATCC 23270   1 1
No Yes Aggregatibacter aphrophilus NJ8700   1 1
No Yes Pasteurella multocida ssp. multocida Pm70   1 1
No Yes Vibrio parahaemolyticus RIMD 2210633   1 1
No Yes Vibrio splendidus LGP32   1 1
No Yes Vibrio cholerae O1 biov. El Tor N16961   1 1
No Yes Photobacterium profundum SS9   1 1
No Yes Psychromonas ingrahamii 37   1 1
No Yes Shewanella piezotolerans WP3   2 2
No Yes Shewanella loihica PV-4   1 1
No Yes Shewanella halifaxensis HAW-EB4   1 1
No Yes Shewanella sediminis HAW-EB3   2 2
No Yes Shewanella pealeana ATCC 700345   1 1
No Yes Shewanella oneidensis MR-1   2 2
No Yes Shewanella baltica OS155   2 2
No Yes Shewanella woodyi ATCC 51908   2 2
No Yes Shewanella sp. MR-7   2 2
No Yes Shewanella amazonensis SB2B   2 2
No Yes Shewanella violacea DSS12   1 1
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Shewanella putrefaciens CN-32   2 2
No Yes Colwellia psychrerythraea 34H   2 2
No Yes Pseudoalteromonas atlantica T6c   2 2
No Yes Pseudoalteromonas haloplanktis TAC125   1 1
No Yes Teredinibacter turnerae T7901   2 2
No Yes Saccharophagus degradans 2-40   1 1
No Yes Alteromonas macleodii Deep ecotype   2 2
No Yes Hahella chejuensis KCTC 2396   8 7
No Yes Alcanivorax borkumensis SK2   1 1
No Yes Marinomonas sp. MWYL1   2 2
No Yes Methylococcus capsulatus Bath   3 3
No Yes Stenotrophomonas maltophilia R551-3   2 2
No Yes Xylella fastidiosa 9a5c   1 1
No Yes Xanthomonas axonopodis pv. citri 306   3 3
No Yes Xanthomonas albilineans   2 2
No Yes Xanthomonas oryzae pv. oryzae KACC10331   2 2
No Yes Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)   1 1
No Yes Halothiobacillus neapolitanus c2   1 1
No Yes Thioalkalivibrio sp. HL-EbGR7   3 3
No Yes Halorhodospira halophila SL1   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes Coxiella burnetii RSA 493   2 2
No Yes Legionella longbeachae NSW150   1 1
No Yes Kangiella koreensis DSM 16069   2 2
No Yes Candidatus Ruthia magnifica Cm   1 1
No Yes Cronobacter turicensis z3032   1 1
No Yes Cronobacter sakazakii ATCC BAA-894   3 3
No Yes Dickeya zeae Ech1591   1 1
No Yes Pectobacterium wasabiae WPP163   2 2
No Yes Pectobacterium atrosepticum SCRI1043   2 2
No Yes Pectobacterium carotovorum ssp. carotovorum PC1   2 2
No Yes Pantoea ananatis LMG 20103   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia enterocolitica ssp. enterocolitica 8081   1 1
No Yes Shigella boydii Sb227   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Escherichia fergusonii ATCC 35469   1 1
No Yes Escherichia coli K-12 subMG1655   1 1
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Enterobacter sp. 638   1 1
No Yes Citrobacter rodentium ICC168   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas entomophila L48   1 1
No Yes Pseudomonas syringae pv. tomato DC3000   2 2
No Yes Pseudomonas stutzeri A1501   3 3
No Yes Pseudomonas putida KT2440   2 2
No Yes Pseudomonas fluorescens Pf-5   5 5
No Yes Pseudomonas mendocina ymp   3 3
No Yes Pseudomonas aeruginosa PAO1   2 2
No Yes Cellvibrio japonicus Ueda107   3 3
No Yes Acinetobacter baumannii ATCC 17978   1 1
No Yes Thiomicrospira crunogena XCL-2   1 1
No Yes Gloeobacter violaceus PCC 7421   15 15
No Yes Acaryochloris marina MBIC11017   15 15
No Yes Prochlorococcus marinus MIT 9313   4 4
No Yes Nostoc punctiforme PCC 73102   25 23
No Yes Nostoc sp. PCC 7120   24 20
No Yes Anabaena variabilis ATCC 29413   19 18
No Yes Trichodesmium erythraeum IMS101   31 28
No Yes Thermosynechococcus elongatus BP-1   8 8
No Yes cyanobacterium UCYN-A   1 1
No Yes Cyanothece sp. ATCC 51142   12 11
No Yes Synechocystis sp. PCC 6803   10 9
No Yes Synechococcus elongatus PCC 6301   10 10
No Yes Microcystis aeruginosa NIES-843   12 12
No Yes Nitrosopumilus maritimus SCM1   4 4
No Yes Candidatus Korarchaeum cryptofilum OPF8   1 1
No Yes Methanocella paludicola SANAE   14 13
No Yes Methanosaeta thermophila PT   5 5
No Yes Methanococcoides burtonii DSM 6242   5 3
No Yes Methanosarcina acetivorans C2A   11 11
No Yes Methanosarcina mazei Go1   12 10
No Yes Methanosarcina barkeri Fusaro   19 15
No Yes Methanohalophilus mahii DSM 5219   1 1
No Yes Methanosphaerula palustris E1-9c   8 7
No Yes Candidatus Methanoregula boonei 6A8   9 8
No Yes Methanospirillum hungatei JF-1   6 6
No Yes Methanocorpusculum labreanum Z   4 4
No Yes Methanoculleus marisnigri JR1   21 16
No Yes Ferroglobus placidus DSM 10642   1 1
No Yes Archaeoglobus profundus DSM 5631   4 4
No Yes Archaeoglobus fulgidus DSM 4304   2 2
No Yes Thermococcus onnurineus NA1   4 4
No Yes Thermococcus kodakarensis KOD1   5 5
No Yes Thermococcus gammatolerans EJ3   4 4
No Yes Thermococcus sibiricus MM 739   1 1
No Yes Pyrococcus horikoshii OT3   4 4
No Yes Pyrococcus abyssi GE5   4 4
No Yes Pyrococcus furiosus DSM 3638   5 5
No Yes Picrophilus torridus DSM 9790   1 1
No Yes Haloquadratum walsbyi DSM 16790   1 1
No Yes Halomicrobium mukohataei DSM 12286   6 6
No Yes Halorhabdus utahensis DSM 12940   8 7
No Yes Haloterrigena turkmenica DSM 5511   3 3
No Yes Natronomonas pharaonis DSM 2160   4 4
No Yes Natrialba magadii ATCC 43099   4 3
No Yes Halorubrum lacusprofundi ATCC 49239   3 3
No Yes Haloferax volcanii DS2   1 1
No Yes Halobacterium salinarum R1   4 3
No Yes Halobacterium sp. NRC-1   3 3
No Yes Haloarcula marismortui ATCC 43049   5 4
No Yes Methanocaldococcus sp. FS406-22   2 2
No Yes Methanocaldococcus fervens AG86   2 2
No Yes Methanocaldococcus vulcanius M7   2 2
No Yes Methanocaldococcus jannaschii DSM 2661   2 2
No Yes Methanococcus maripaludis S2   5 5
No Yes Methanococcus vannielii SB   5 5
No Yes Methanothermobacter thermautotrophicus Delta H   6 6
No Yes Methanosphaera stadtmanae DSM 3091   2 2
No Yes Methanobrevibacter ruminantium M1   9 8
No Yes Methanobrevibacter smithii ATCC 35061   2 2
No Yes uncultured methanogenic archaeon RC-I   16 15
No Yes Metallosphaera sedula DSM 5348   3 3
No Yes Sulfolobus tokodaii 7   1 1
No Yes Sulfolobus islandicus Y.N.15.51   2 2
No Yes Thermofilum pendens Hrk 5   1 1
No Yes Caldivirga maquilingensis IC-167   2 2
No Yes Pyrobaculum calidifontis JCM 11548   1 1
No Yes Pyrobaculum arsenaticum DSM 13514   1 1
No Yes Pyrobaculum aerophilum IM2   1 1
No Yes Pyrobaculum islandicum DSM 4184   1 1
No Yes Thermoproteus neutrophilus V24Sta   1 1
No Yes Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase) Fruit fly 328 283
No Yes Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase) Nematode 211 199
No Yes Cryptococcus neoformans var. grubii H99   121 113
No Yes Cryptococcus neoformans B-3501A   122 114
No Yes Ajellomyces dermatitidis ER-3   114 107
No Yes Histoplasma capsulatum H143   112 106
No Yes Histoplasma capsulatum H88   113 107
No Yes Histoplasma capsulatum G186AR   112 106
No Yes Paracoccidioides brasiliensis Pb01   112 104
No Yes Paracoccidioides brasiliensis Pb03   112 106
No Yes Coccidioides posadasii str. Silveira   115 107
No Yes Coccidioides immitis RMSCC 3703   111 105
No Yes Coccidioides immitis RMSCC 2394   113 106
No Yes Coccidioides immitis H538.4   119 112
No Yes Aspergillus fumigatus A1163   114 108
No Yes Candida albicans WO-1   106 98
No Yes Saccharomyces cerevisiae YJM789   111 104
No Yes Saccharomyces cerevisiae RM11-1a   99 92
No Yes Saccharomyces cerevisiae Ensembl 49_1h (all transcripts) Baker's yeast 113 105
No Yes Schizosaccharomyces pombe 972h-   134 126
No Yes Batrachochytrium dendrobatidis JAM81   181 173
No Yes Oryza sativa ssp. Indica (Subspecies) Indian rice 388 361
No Yes Plasmodium falciparum HB3   77 67
No Yes Plasmodium falciparum Dd2   59 52
No Yes Leptospira borgpetersenii ser. Hardjo-bovis JB197   8 7
No Yes Leptospira interrogans ser. Copenhageni Fiocruz L1-130   10 9
No Yes Leptospira biflexa ser. Patoc Patoc 1 (Ames)   7 7
No Yes Treponema pallidum ssp. pallidum SS14   2 2
No Yes Borrelia burgdorferi ZS7   1 1
No Yes Bifidobacterium longum ssp. infantis ATCC 15697   2 2
No Yes Bifidobacterium longum   1 1
No Yes Bifidobacterium animalis ssp. lactis Bl-04   1 1
No Yes Bifidobacterium animalis ssp. lactis DSM 10140   1 1
No Yes Frankia sp. EAN1pec   3 3
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. JLS   1 1
No Yes Mycobacterium avium 104   1 1
No Yes Corynebacterium glutamicum R   4 4
No Yes Corynebacterium glutamicum ATCC 13032 Bielefeld   4 4
No Yes Clavibacter michiganensis ssp. sepedonicus   3 3
No Yes Dehalococcoides sp. GT   3 3
No Yes Dehalococcoides sp. VS   3 3
No Yes Dehalococcoides sp. BAV1   3 3
No Yes Chlorobium phaeobacteroides BS1   1 1
No Yes Porphyromonas gingivalis ATCC 33277   3 3
No Yes Bacteroides fragilis YCH46   2 2
No Yes Salinibacter ruber   3 2
No Yes Chlamydophila pneumoniae J138   3 3
No Yes Chlamydophila pneumoniae CWL029   3 3
No Yes Chlamydophila pneumoniae AR39   3 3
No Yes Chlamydia trachomatis B/TZ1A828/OT   3 3
No Yes Chlamydia trachomatis B/Jali20/OT   3 3
No Yes Chlamydia trachomatis L2b/UCH-1/proctitis   3 3
No Yes Chlamydia trachomatis 434/Bu   3 3
No Yes Chlamydia trachomatis A/HAR-13   3 3
No Yes Desulfitobacterium hafniense DCB-2   1 1
No Yes Clostridium kluyveri NBRC 12016   1 1
No Yes Clostridium difficile R20291   4 4
No Yes Clostridium difficile CD196   4 4
No Yes Clostridium botulinum F Langeland   3 3
No Yes Clostridium botulinum E3 Alaska E43   2 2
No Yes Clostridium botulinum B1 Okra   3 3
No Yes Clostridium botulinum Ba4 657   3 3
No Yes Clostridium botulinum B Eklund 17B   2 2
No Yes Clostridium botulinum A2 Kyoto   3 3
No Yes Clostridium botulinum A3 Loch Maree   3 3
No Yes Clostridium botulinum A Hall   3 3
No Yes Clostridium botulinum A ATCC 19397   3 3
No Yes Lactobacillus casei BL23   3 3
No Yes Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365   3 3
No Yes Lactococcus lactis ssp. lactis KF147   1 1
No Yes Lactococcus lactis ssp. cremoris MG1363   1 1
No Yes Lactococcus lactis ssp. cremoris SK11   1 1
No Yes Streptococcus pneumoniae CGSP14   2 2
No Yes Streptococcus pneumoniae G54   1 1
No Yes Streptococcus pneumoniae P1031   1 1
No Yes Streptococcus pneumoniae JJA   1 1
No Yes Streptococcus pneumoniae 70585   1 1
No Yes Streptococcus pneumoniae Taiwan19F-14   2 2
No Yes Streptococcus pneumoniae D39   1 1
No Yes Streptococcus pneumoniae R6 (Non-virulent)   2 2
No Yes Streptococcus agalactiae A909   1 1
No Yes Streptococcus agalactiae 2603V/R   1 1
No Yes Streptococcus mutans NN2025   2 2
No Yes Streptococcus thermophilus LMD-9   1 1
No Yes Streptococcus thermophilus CNRZ1066 (Younger strain)   1 1
No Yes Streptococcus suis BM407   1 1
No Yes Streptococcus suis SC84   1 1
No Yes Streptococcus suis 98HAH33   3 3
No Yes Streptococcus suis P1/7   1 1
No Yes Listeria monocytogenes 08-5578   2 2
No Yes Listeria monocytogenes 08-5923   2 2
No Yes Listeria monocytogenes Clip80459   3 3
No Yes Listeria monocytogenes HCC23   4 4
No Yes Listeria monocytogenes 4b F2365   3 3
No Yes Geobacillus sp. Y412MC61   3 3
No Yes Geobacillus sp. Y412MC10   7 7
No Yes Bacillus licheniformis ATCC 14580   3 3
No Yes Bacillus cytotoxicus NVH 391-98   1 1
No Yes Bacillus thuringiensis Al Hakam   5 5
No Yes Bacillus cereus 03BB102   6 6
No Yes Bacillus cereus AH820   7 7
No Yes Bacillus cereus AH187   6 6
No Yes Bacillus cereus B4264   5 5
No Yes Bacillus cereus G9842   5 5
No Yes Bacillus cereus Q1   6 6
No Yes Bacillus cereus E33L   6 6
No Yes Bacillus cereus ATCC 10987   6 6
No Yes Bacillus anthracis A0248   7 7
No Yes Bacillus anthracis CDC 684   7 7
No Yes Bacillus anthracis Sterne   7 7
No Yes Bacillus anthracis Ames   7 7
No Yes Bacillus megaterium DSM319   5 5
No Yes Staphylococcus epidermidis ATCC 12228   1 1
No Yes Staphylococcus aureus RF122   2 2
No Yes Staphylococcus aureus ssp. aureus ED98   2 2
No Yes Staphylococcus aureus ssp. aureus Newman   2 2
No Yes Staphylococcus aureus ssp. aureus Mu3   2 2
No Yes Staphylococcus aureus ssp. aureus USA300_TCH1516   2 2
No Yes Staphylococcus aureus ssp. aureus USA300_FPR3757   2 2
No Yes Staphylococcus aureus ssp. aureus JH1   2 2
No Yes Staphylococcus aureus ssp. aureus JH9   2 2
No Yes Staphylococcus aureus ssp. aureus MSSA476   2 2
No Yes Staphylococcus aureus ssp. aureus MRSA252   2 2
No Yes Staphylococcus aureus ssp. aureus MW2   2 2
No Yes Staphylococcus aureus ssp. aureus N315   2 2
No Yes Staphylococcus aureus ssp. aureus Mu50   2 2
No Yes Staphylococcus aureus ssp. aureus COL   2 2
No Yes Desulfovibrio vulgaris DP4   3 2
No Yes Desulfovibrio vulgaris Miyazaki F   3 2
No Yes Desulfovibrio desulfuricans ssp. desulfuricans ATCC 27774   4 3
No Yes Geobacter sp. M21   4 4
No Yes Anaeromyxobacter sp. K   10 9
No Yes Anaeromyxobacter dehalogenans 2CP-1   10 9
No Yes Azoarcus sp. BH72   2 2
No Yes Neisseria meningitidis alpha14   1 1
No Yes Ralstonia eutropha H16   1 1
No Yes Ralstonia pickettii 12D   1 1
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Rhodobacter sphaeroides KD131   2 2
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   2 2
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Ehrlichia ruminantium Gardel   1 1
No Yes Ehrlichia ruminantium Welgevonden   1 1
No Yes Orientia tsutsugamushi Ikeda   2 2
No Yes Rickettsia bellii OSU 85-389   2 2
No Yes Rickettsia rickettsii Iowa   2 2
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens AM1   1 1
No Yes Brucella abortus S19   1 1
No Yes Brucella melitensis biov. Abortus 2308   1 1
No Yes Rhizobium etli CIAT 652   3 3
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   2 2
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   2 2
No Yes Rhodopseudomonas palustris TIE-1   4 4
No Yes Rhodopseudomonas palustris HaA2   2 2
No Yes Rhodopseudomonas palustris BisB5   4 4
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Bradyrhizobium sp. BTAi1   3 3
No Yes Acidithiobacillus ferrooxidans ATCC 53993   1 1
No Yes Vibrio cholerae M66-2   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Shewanella sp. W3-18-1   2 2
No Yes Shewanella sp. ANA-3   2 2
No Yes Shewanella baltica OS223   2 2
No Yes Shewanella baltica OS185   4 4
No Yes Shewanella baltica OS195   3 3
No Yes Shewanella sp. MR-4   2 2
No Yes Stenotrophomonas maltophilia K279a   2 2
No Yes Xylella fastidiosa M23   1 1
No Yes Xylella fastidiosa M12   1 1
No Yes Xylella fastidiosa Temecula1   1 1
No Yes Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)   4 3
No Yes Xanthomonas oryzae pv. oryzae PXO99A   3 3
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   3 2
No Yes Xanthomonas campestris pv. campestris B100   1 1
No Yes Xanthomonas campestris pv. campestris 8004 (Completed 2005)   1 1
No Yes Thioalkalivibrio sp. K90mix   1 1
No Yes Coxiella burnetii CbuK_Q154   1 1
No Yes Coxiella burnetii CbuG_Q212   1 1
No Yes Coxiella burnetii Dugway 5J108-111   2 2
No Yes Coxiella burnetii RSA 331   2 2
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis YPIII   2 2
No Yes Yersinia pseudotuberculosis IP 31758   1 1
No Yes Yersinia pestis Z176003   1 1
No Yes Yersinia pestis Pestoides F   1 1
No Yes Yersinia pestis Nepal516   1 1
No Yes Yersinia pestis Antiqua   1 1
No Yes Yersinia pestis Angola   1 1
No Yes Yersinia pestis biov. Microtus 91001   1 1
No Yes Yersinia pestis KIM   1 1
No Yes Salmonella enterica ssp. enterica ser. Paratyphi C RKS4594   1 1
No Yes Escherichia coli BL21   1 1
No Yes Escherichia coli ATCC 8739   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli O103:H2 12009   1 1
No Yes Escherichia coli HS   1 1
No Yes Escherichia coli E24377A   1 1
No Yes Escherichia coli O26:H11 11368   1 1
No Yes Escherichia coli O111:H- 11128   1 1
No Yes Escherichia coli O157:H7 EDL933   1 1
No Yes Escherichia coli BW2952   1 1
No Yes Escherichia coli K-12 subW3110   1 1
No Yes Escherichia coli K-12 subDH10B   1 1
No Yes Escherichia coli B REL606   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   2 2
No Yes Pseudomonas syringae pv. syringae B728a   2 2
No Yes Pseudomonas putida W619   2 2
No Yes Pseudomonas putida F1   1 1
No Yes Pseudomonas putida GB-1   2 2
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas fluorescens Pf0-1   2 2
No Yes Pseudomonas aeruginosa LESB58   2 2
No Yes Pseudomonas aeruginosa PA7   5 5
No Yes Pseudomonas aeruginosa UCBPP-PA14   3 3
No Yes Acinetobacter baumannii AB307-0294   1 1
No Yes Acinetobacter baumannii AYE   1 1
No Yes Acinetobacter baumannii AB0057   1 1
No Yes Acinetobacter baumannii ACICU   1 1
No Yes Francisella novicida U112   2 2
No Yes Prochlorococcus marinus NATL1A   4 4
No Yes Prochlorococcus marinus MIT 9301   1 1
No Yes Prochlorococcus marinus MIT 9515   1 1
No Yes Prochlorococcus marinus AS9601   1 1
No Yes Prochlorococcus marinus ssp. marinus CCMP1375   9 7
No Yes Prochlorococcus marinus ssp. pastoris CCMP1986   1 1
No Yes Prochlorococcus marinus MIT 9215   1 1
No Yes Prochlorococcus marinus MIT 9211   5 5
No Yes Prochlorococcus marinus MIT 9312   1 1
No Yes Prochlorococcus marinus MIT 9303   4 4
No Yes Prochlorococcus marinus NATL2A   3 3
No Yes Cyanothece sp. PCC 8802   12 12
No Yes Cyanothece sp. PCC 7425   19 17
No Yes Cyanothece sp. PCC 7424   14 14
No Yes Cyanothece sp. PCC 8801   14 13
No Yes Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)   8 8
No Yes Synechococcus sp. JA-3-3Ab (Poor annotation)   7 7
No Yes Synechococcus sp. CC9902 (Poor annotation)   11 11
No Yes Synechococcus sp. RCC307   10 10
No Yes Synechococcus sp. CC9605 (Poor annotation)   8 8
No Yes Synechococcus sp. WH 8102 (Good annotation)   9 9
No Yes Synechococcus sp. CC9311   11 11
No Yes Synechococcus sp. WH 7803   8 8
No Yes Synechococcus sp. PCC 7002   8 8
No Yes Synechococcus elongatus PCC 7942   11 11
No Yes Methanococcus maripaludis C6   4 4
No Yes Methanococcus maripaludis C7   5 5
No Yes Methanococcus maripaludis C5   5 5
No Yes Sulfolobus islandicus Y.G.57.14   1 1
No Yes Sulfolobus islandicus L.S.2.15   1 1
No Yes Sulfolobus islandicus M.16.27   1 1
No Yes Sulfolobus islandicus M.14.25   1 1
No Yes Ailuropoda melanoleuca (Draft) Giant panda 316 289
No Yes Moniliophthora perniciosa FA553 (Genome survey)   93 91
No Yes Lotus japonicus (Early assembly)   55 46
No Yes Prunus persica (Early draft) Peach 320 293
No Yes Manihot esculenta (Early draft) Cassava 528 481
No Yes Ricinus communis (Early assembly) Castor bean 290 269
No Yes Mimulus guttatus (Early draft) Spotted monkey flower 367 340
No Yes Phoenix dactylifera (Early draft) Date palm 312 284
No Yes Trypanosoma vivax (Parial)   121 115
No Yes Trypanosoma congolense (Partial)   149 142
No Yes Toxoplasma gondii GT1 (Early assembly)   94 81
No Yes Toxoplasma gondii VEG (Early assembly)   94 82
No Yes Toxoplasma gondii RH (Archived)   97 83
No Yes Homo sapiens 49_36k (longest transcript per gene) Human 327 303
No Yes Pan troglodytes 49_21h (longest transcript per gene) Chimpanzee 311 287
No Yes Gorilla gorilla 52_1 (longest transcript per gene) Western Gorilla 237 224
No Yes Pongo pygmaeus 49_1 (longest transcript per gene) Bornean orangutan 292 269
No Yes Macaca mulatta 49_10h (longest transcript per gene) Rhesus monkey 313 290
No Yes Callithrix jacchus 56_3 (longest transcript per gene) White-tufted-ear marmoset 304 284
No Yes Otolemur garnettii 49_1c (longest transcript per gene) Small-eared galago 250 230
No Yes Microcebus murinus 49_1 (longest transcript per gene) Gray mouse lemur 262 245
No Yes Tarsius syrichta 51_1 (longest transcript per gene) Philippine tarsier 245 228
No Yes Rattus norvegicus 49_34s (longest transcript per gene) Norway rat 318 293
No Yes Mus musculus 49_37b (longest transcript per gene) House mouse 317 296
No Yes Spermophilus tridecemlineatus 49_1e (longest transcript per gene) Thirteen-lined ground squirrel 239 219
No Yes Dipodomys ordii 51_1 (longest transcript per gene) Ord's kangaroo rat 263 247
No Yes Cavia porcellus 51_3 (longest transcript per gene) Domestic guinea pig 309 287
No Yes Oryctolagus cuniculus 49_1f (longest transcript per gene) Rabbit 250 230
No Yes Ochotona princeps 49_1 (longest transcript per gene) American pika 268 245
No Yes Tupaia belangeri 49_1d (longest transcript per gene) Northern tree shrew 251 231
No Yes Sus scrofa 56_9 (longest transcript per gene) Pig 267 251
No Yes Bos taurus 49_3f (longest transcript per gene) Cattle 309 288
No Yes Vicugna pacos 51_1 (longest transcript per gene) Alpaca 226 209
No Yes Tursiops truncatus 51_1 (longest transcript per gene) Bottlenosed dolphin 291 271
No Yes Canis familiaris 49_2g (longest transcript per gene) Dog 313 288
No Yes Felis catus 49_1c (longest transcript per gene) Domestic cat 210 199
No Yes Equus caballus 49_2 (longest transcript per gene) Horse 312 292
No Yes Myotis lucifugus 49_1e (longest transcript per gene) Little brown bat 256 241
No Yes Pteropus vampyrus 51_1 (longest transcript per gene) Large flying fox 298 276
No Yes Sorex araneus 49_1c (longest transcript per gene) European shrew 241 219
No Yes Erinaceus europaeus 49_1c (longest transcript per gene) Western European hedgehog 248 232
No Yes Procavia capensis 51_1 (longest transcript per gene) Cape rock hyrax 266 246
No Yes Loxodonta africana 49_1d (longest transcript per gene) African savanna elephant 248 232
No Yes Echinops telfairi 49_1e (longest transcript per gene) Small Madagascar hedgehog 257 236
No Yes Dasypus novemcinctus 49_1f (longest transcript per gene) Nine-banded armadillo 223 202
No Yes Macropus eugenii 55_1 (longest transcript per gene) Tammar wallaby 251 235
No Yes Monodelphis domestica 49_5d (longest transcript per gene) Gray short-tailed opossum 300 270
No Yes Ornithorhynchus anatinus 49_1f (longest transcript per gene) Platypus 277 260
No Yes Anolis carolinensis 55_1a (longest transcript per gene) Green anole 298 270
No Yes Taeniopygia guttata 57_1c (longest transcript per gene) Zebra finch 323 294
No Yes Meleagris gallopavo 57_2 (longest transcript per gene) Turkey 278 255
No Yes Gallus gallus 49_2g (longest transcript per gene) Chicken 285 261
No Yes Xenopus tropicalis 49_41i (longest transcript per gene) Western clawed frog 242 226
No Yes Danio rerio 49_7c (longest transcript per gene) Zebrafish 272 255
No Yes Gasterosteus aculeatus 49_1f (longest transcript per gene) Three-spined stickleback 312 281
No Yes Oryzias latipes 49_1e (longest transcript per gene) Japanese medaka 305 275
No Yes Tetraodon nigroviridis 49_1k (longest transcript per gene) Spotted green pufferfish 347 323
No Yes Takifugu rubripes 49_4i (longest transcript per gene) Torafugu 322 292
No Yes Ciona savignyi 49_2f (longest transcript per gene)   156 145
No Yes Ciona intestinalis 49_2i (longest transcript per gene)   194 176
No Yes Apis mellifera 37.2d (longest transcript per gene) (Not maintained) Honey bee 146 137
No Yes Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase) Fruit fly 328 283
No Yes Drosophila melanogaster Ensembl 49_54 (longest transcript per gene) Fruit fly 191 174
No Yes Aedes aegypti 49_1b (longest transcript per gene) Yellow fever mosquito 198 183
No Yes Anopheles gambiae 49_3j (longest transcript per gene) African malaria mosquito 179 163
No Yes Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase) Nematode 165 155
No Yes Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene) Nematode 164 154
No Yes Arabidopsis thaliana 9 (longest transcript per gene) Thale cress 370 332
No Yes Oryza sativa ssp. japonica 5.0 (Not transposons) Japanese rice 450 415
No Yes NCBI viral sequences (Viral)   7 7
No Yes PDB chains (SCOP 1.73) (PDB)   97 84
No Yes TargetDB (Targets)   607 583
No Yes UniProt 15.0 (UniProt)   26844 25048
No Yes UniProt 15.0 viral sequences (Viral)   15 15

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