TPR-like superfamily domain assignments
in
PDB chains (SCOP 1.73)

Select to display	Genome		Domains	Proteins
No Yes	ALL		109212	109212
No Yes	Homo sapiens 49_36k (all transcripts)	Human	427	351
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	297	248
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	142	126
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	225	185
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	325	276
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	386	327
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	141	119
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	161	129
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	143	114
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	243	206
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	316	278
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	120	105
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	162	138
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	179	149
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	140	114
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	154	130
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	145	119
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	169	140
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	261	208
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	127	101
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	204	151
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	238	197
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	127	110
No Yes	Equus caballus 49_2 (all transcripts)	Horse	198	160
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	148	119
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	166	137
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	107	92
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	131	109
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	151	131
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	132	111
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	141	115
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	126	99
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	141	120
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	303	250
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	223	190
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	171	139
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	172	144
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	157	130
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	208	164
No Yes	Xenopus laevis	African clawed frog	302	237
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	214	179
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	207	183
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	251	212
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	228	190
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	188	159
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	443	368
No Yes	Branchiostoma floridae 1.0	Florida lancelet	1051	676
No Yes	Ciona savignyi 49_2f (all transcripts)		172	144
No Yes	Ciona intestinalis 49_2i (all transcripts)		201	168
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	308	265
No Yes	Helobdella robusta		109	97
No Yes	Capitella sp. I		173	149
No Yes	Bombyx mori	Domestic silkworm	90	79
No Yes	Nasonia vitripennis	Jewel wasp	103	90
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	238	182
No Yes	Drosophila grimshawi 1.3		118	101
No Yes	Drosophila willistoni 1.3		112	94
No Yes	Drosophila pseudoobscura 2.3		119	98
No Yes	Drosophila persimilis 1.3		122	101
No Yes	Drosophila yakuba 1.3		121	103
No Yes	Drosophila simulans 1.3		100	90
No Yes	Drosophila sechellia 1.3		112	99
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	161	132
No Yes	Drosophila erecta 1.3		119	100
No Yes	Drosophila ananassae 1.3		117	98
No Yes	Drosophila virilis 1.2		118	100
No Yes	Drosophila mojavensis 1.3		118	99
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	136	115
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	152	131
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	120	96
No Yes	Tribolium castaneum 3.0	Red flour beetle	123	103
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	134	105
No Yes	Acyrthosiphon pisum	Pea aphid	110	86
No Yes	Daphnia pulex	Common water flea	130	107
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	96	83
No Yes	Lottia gigantea		150	123
No Yes	Pristionchus pacificus		73	66
No Yes	Meloidogyne incognita	Southern root-knot nematode	92	82
No Yes	Meloidogyne hapla		82	73
No Yes	Brugia malayi	Agent of lymphatic filariasis	53	45
No Yes	Caenorhabditis japonica		85	72
No Yes	Caenorhabditis brenneri		79	67
No Yes	Caenorhabditis remanei		93	79
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	130	117
No Yes	Caenorhabditis briggsae 2		87	75
No Yes	Schistosoma mansoni		102	91
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	298	210
No Yes	Hydra magnipapillata		160	136
No Yes	Trichoplax adhaerens		405	229
No Yes	Proterospongia sp. ATCC 50818		218	171
No Yes	Monosiga brevicollis		117	97
No Yes	Capsaspora owczarzaki ATCC 30864		91	78
No Yes	Malassezia globosa CBS 7966		49	40
No Yes	Ustilago maydis		49	40
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		63	54
No Yes	Melampsora laricis-populina		71	63
No Yes	Sporobolomyces roseus IAM 13481		55	48
No Yes	Serpula lacrymans var. lacrymans S7.9		64	52
No Yes	Coprinopsis cinerea okayama7 130		97	84
No Yes	Pleurotus ostreatus	Oyster mushroom	55	46
No Yes	Laccaria bicolor S238N-H82		384	237
No Yes	Agaricus bisporus var. bisporus		62	52
No Yes	Schizophyllum commune		63	55
No Yes	Heterobasidion annosum		76	64
No Yes	Phanerochaete chrysosporium RP-78 2.1		51	41
No Yes	Postia placenta		109	91
No Yes	Tremella mesenterica		49	39
No Yes	Cryptococcus neoformans JEC21		49	40
No Yes	Magnaporthe grisea 70-15		65	53
No Yes	Podospora anserina		80	65
No Yes	Sporotrichum thermophile ATCC 42464		63	51
No Yes	Thielavia terrestris NRRL 8126		66	53
No Yes	Chaetomium globosum CBS 148.51		84	68
No Yes	Neurospora tetrasperma		53	44
No Yes	Neurospora discreta FGSC 8579		47	40
No Yes	Neurospora crassa OR74A		54	46
No Yes	Cryphonectria parasitica	Chestnut blight fungus	61	51
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		92	80
No Yes	Nectria haematococca mpVI		71	62
No Yes	Fusarium verticillioides 7600		62	52
No Yes	Fusarium graminearum		79	66
No Yes	Trichoderma atroviride		75	67
No Yes	Trichoderma reesei 1.2		57	46
No Yes	Trichoderma virens Gv29-8		83	72
No Yes	Verticillium dahliae VdLs.17		57	47
No Yes	Verticillium albo-atrum VaMs.102		41	37
No Yes	Botrytis cinerea B05.10		75	62
No Yes	Sclerotinia sclerotiorum		69	58
No Yes	Alternaria brassicicola		57	46
No Yes	Pyrenophora tritici-repentis		77	61
No Yes	Cochliobolus heterostrophus		84	70
No Yes	Stagonospora nodorum		66	57
No Yes	Mycosphaerella fijiensis CIRAD86		54	45
No Yes	Mycosphaerella graminicola IPO323		61	52
No Yes	Ajellomyces dermatitidis SLH14081		60	49
No Yes	Histoplasma capsulatum class NAmI strain WU24		52	42
No Yes	Microsporum gypseum		70	55
No Yes	Arthroderma benhamiae CBS 112371		66	51
No Yes	Microsporum canis CBS 113480		70	55
No Yes	Trichophyton equinum CBS 127.97		73	58
No Yes	Trichophyton verrucosum HKI 0517		64	51
No Yes	Trichophyton tonsurans CBS 112818		69	55
No Yes	Trichophyton rubrum CBS 118892		63	51
No Yes	Paracoccidioides brasiliensis Pb18		49	41
No Yes	Coccidioides posadasii RMSCC 3488		60	48
No Yes	Coccidioides immitis RS		64	50
No Yes	Uncinocarpus reesii 1704		61	48
No Yes	Aspergillus fumigatus Af293		73	56
No Yes	Neosartorya fischeri NRRL 181		89	64
No Yes	Penicillium chrysogenum Wisconsin 54-1255		86	72
No Yes	Penicillium marneffei ATCC 18224		72	58
No Yes	Aspergillus carbonarius ITEM 5010		71	54
No Yes	Aspergillus terreus NIH2624		79	61
No Yes	Aspergillus oryzae RIB40		83	66
No Yes	Aspergillus niger ATCC 1015		63	49
No Yes	Aspergillus flavus NRRL3357		83	67
No Yes	Aspergillus clavatus NRRL 1		63	49
No Yes	Aspergillus nidulans FGSC A4		87	67
No Yes	Tuber melanosporum Vittad	Perigord truffle	122	90
No Yes	Candida dubliniensis CD36		49	37
No Yes	Candida tropicalis MYA-3404		43	36
No Yes	Candida parapsilosis		43	35
No Yes	Candida albicans SC5314		37	32
No Yes	Yarrowia lipolytica CLIB122		56	47
No Yes	Candida lusitaniae ATCC 42720		49	40
No Yes	Vanderwaltozyma polyspora DSM 70294		43	35
No Yes	Candida glabrata CBS138		47	38
No Yes	Kluyveromyces thermotolerans CBS 6340		46	38
No Yes	Lachancea kluyveri		43	35
No Yes	Kluyveromyces waltii		43	34
No Yes	Lodderomyces elongisporus NRRL YB-4239		44	39
No Yes	Ashbya gossypii ATCC 10895		40	35
No Yes	Debaromyces hansenii		46	38
No Yes	Zygosaccharomyces rouxii		42	35
No Yes	Saccharomyces mikatae MIT		47	38
No Yes	Saccharomyces paradoxus MIT		49	39
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	49	39
No Yes	Saccharomyces bayanus MIT		46	36
No Yes	Candida guilliermondii ATCC 6260		84	68
No Yes	Pichia stipitis CBS 6054		43	34
No Yes	Pichia pastoris GS115		42	37
No Yes	Kluyveromyces lactis		48	39
No Yes	Schizosaccharomyces octosporus yFS286		49	40
No Yes	Schizosaccharomyces japonicus yFS275		52	42
No Yes	Schizosaccharomyces pombe	Fission yeast	54	41
No Yes	Allomyces macrogynus ATCC 38327		152	119
No Yes	Rhizopus oryzae RA 99-880		89	79
No Yes	Phycomyces blakesleeanus		80	68
No Yes	Mucor circinelloides		77	68
No Yes	Encephalitozoon intestinalis		13	13
No Yes	Encephalitozoon cuniculi		15	14
No Yes	Spizellomyces punctatus DAOM BR117		111	90
No Yes	Batrachochytrium dendrobatidis JEL423		93	78
No Yes	Dictyostelium discoideum		109	93
No Yes	Dictyostelium purpureum		100	80
No Yes	Entamoeba dispar		47	42
No Yes	Entamoeba invadens		41	36
No Yes	Entamoeba histolytica 1		50	46
No Yes	Arabidopsis lyrata	Lyrate rockcress	241	218
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	279	248
No Yes	Carica papaya	Papaya	206	183
No Yes	Medicago truncatula	Barrel medic	195	171
No Yes	Glycine max	Soybean	469	399
No Yes	Cucumis sativus	Cucumber	351	301
No Yes	Populus trichocarpa 1.1	Black cottonwood	345	302
No Yes	Vitis vinifera	Wine grape	254	228
No Yes	Brachypodium distachyon		322	272
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	372	321
No Yes	Zea mays subsp. mays	Maize	368	323
No Yes	Sorghum bicolor	Sorghum	251	219
No Yes	Selaginella moellendorffii		637	580
No Yes	Physcomitrella patens subsp. patens		201	166
No Yes	Coccomyxa sp. C-169		113	100
No Yes	Chlorella sp. NC64A		103	90
No Yes	Chlorella vulgaris		119	103
No Yes	Volvox carteri f. nagariensis		127	113
No Yes	Chlamydomonas reinhardtii 4.0		129	110
No Yes	Ostreococcus sp. RCC809		103	96
No Yes	Ostreococcus lucimarinus CCE9901		113	102
No Yes	Ostreococcus tauri		107	96
No Yes	Micromonas sp. RCC299		129	111
No Yes	Micromonas pusilla CCMP1545		128	110
No Yes	Cyanidioschyzon merolae		41	33
No Yes	Giardia lamblia		36	30
No Yes	Trypanosoma cruzi strain CL Brener		160	141
No Yes	Trypanosoma brucei		96	82
No Yes	Leishmania mexicana		92	79
No Yes	Leishmania major strain Friedlin		93	80
No Yes	Leishmania infantum JPCM5		93	81
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		95	79
No Yes	Aureococcus anophagefferens		184	151
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	160	140
No Yes	Phytophthora sojae 1.1		159	138
No Yes	Phytophthora infestans T30-4		176	149
No Yes	Phytophthora capsici		118	105
No Yes	Phaeodactylum tricornutum		125	101
No Yes	Fragilariopsis cylindrus		191	163
No Yes	Thalassiosira pseudonana		122	100
No Yes	Paramecium tetraurelia		571	409
No Yes	Tetrahymena thermophila SB210 1		498	334
No Yes	Babesia bovis T2Bo		36	30
No Yes	Theileria parva		35	29
No Yes	Theileria annulata		25	21
No Yes	Plasmodium falciparum 3D7		36	33
No Yes	Plasmodium vivax SaI-1		33	32
No Yes	Plasmodium knowlesi strain H		38	35
No Yes	Plasmodium yoelii ssp. yoelii 1		34	32
No Yes	Plasmodium chabaudi		44	41
No Yes	Plasmodium berghei ANKA		37	36
No Yes	Cryptosporidium hominis		25	22
No Yes	Cryptosporidium muris		32	29
No Yes	Cryptosporidium parvum Iowa II		32	28
No Yes	Neospora caninum Nc-Liverpool		67	62
No Yes	Neospora caninum		65	60
No Yes	Toxoplasma gondii ME49		66	61
No Yes	Naegleria gruberi		207	176
No Yes	Trichomonas vaginalis		166	138
No Yes	Guillardia theta		4	4
No Yes	Emiliania huxleyi CCMP1516		304	281
No Yes	Acholeplasma laidlawii PG-8A		1	1
No Yes	Aminobacterium colombiense DSM 12261		2	2
No Yes	Thermanaerovibrio acidaminovorans DSM 6589		5	5
No Yes	Brachyspira hyodysenteriae WA1		74	59
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis L550		49	44
No Yes	Leptospira interrogans ser. Lai 56601		53	48
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Paris)		50	44
No Yes	Treponema pallidum ssp. pallidum Nichols		27	23
No Yes	Treponema denticola ATCC 35405		52	43
No Yes	Borrelia garinii PBi		19	18
No Yes	Borrelia afzelii PKo		22	19
No Yes	Borrelia burgdorferi B31		20	19
No Yes	Borrelia recurrentis A1		19	18
No Yes	Borrelia duttonii Ly		18	18
No Yes	Borrelia turicatae 91E135		20	19
No Yes	Borrelia hermsii DAH		20	19
No Yes	Rhodopirellula baltica SH 1		72	61
No Yes	Pirellula staleyi DSM 6068		65	56
No Yes	Gardnerella vaginalis 409-05		3	3
No Yes	Bifidobacterium longum NCC2705		2	2
No Yes	Bifidobacterium animalis ssp. lactis AD011		3	3
No Yes	Bifidobacterium dentium Bd1		3	3
No Yes	Bifidobacterium adolescentis ATCC 15703		3	3
No Yes	Kineococcus radiotolerans SRS30216		9	9
No Yes	Catenulispora acidiphila DSM 44928		109	82
No Yes	Stackebrandtia nassauensis DSM 44728		110	72
No Yes	Acidothermus cellulolyticus 11B		7	7
No Yes	Nakamurella multipartita DSM 44233		17	17
No Yes	Geodermatophilus obscurus DSM 43160		22	22
No Yes	Frankia sp. CcI3		33	26
No Yes	Frankia alni ACN14a		49	32
No Yes	Thermobifida fusca YX		18	15
No Yes	Thermomonospora curvata DSM 43183		37	29
No Yes	Streptosporangium roseum DSM 43021		104	75
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		69	51
No Yes	Streptomyces avermitilis MA-4680		49	41
No Yes	Streptomyces scabiei 87.22		64	50
No Yes	Streptomyces coelicolor A3(2)		52	47
No Yes	Actinosynnema mirum DSM 43827		59	48
No Yes	Saccharomonospora viridis DSM 43017		19	18
No Yes	Saccharopolyspora erythraea NRRL 2338		41	34
No Yes	Kribbella flavida DSM 17836		70	50
No Yes	Nocardioides sp. JS614		7	6
No Yes	Propionibacterium acnes KPA171202		1	1
No Yes	Salinispora arenicola CNS-205		25	24
No Yes	Salinispora tropica CNB-440		21	19
No Yes	Gordonia bronchialis DSM 43247		5	5
No Yes	Rhodococcus jostii RHA1		23	20
No Yes	Rhodococcus opacus B4		23	20
No Yes	Rhodococcus erythropolis PR4		6	6
No Yes	Nocardia farcinica IFM 10152		15	13
No Yes	Mycobacterium abscessus		6	6
No Yes	Mycobacterium sp. MCS		11	11
No Yes	Mycobacterium avium ssp. paratuberculosis K-10		8	8
No Yes	Mycobacterium vanbaalenii PYR-1		14	14
No Yes	Mycobacterium tuberculosis H37Rv		5	5
No Yes	Mycobacterium bovis AF2122/97		6	6
No Yes	Mycobacterium ulcerans Agy99		6	6
No Yes	Mycobacterium gilvum PYR-GCK		6	6
No Yes	Mycobacterium marinum M		11	11
No Yes	Mycobacterium smegmatis MC2 155		11	11
No Yes	Mycobacterium leprae TN		1	1
No Yes	Corynebacterium aurimucosum		2	2
No Yes	Corynebacterium kroppenstedtii DSM 44385		2	2
No Yes	Corynebacterium efficiens YS-314		2	2
No Yes	Corynebacterium urealyticum DSM 7109		1	1
No Yes	Corynebacterium jeikeium K411		2	2
No Yes	Corynebacterium glutamicum ATCC 13032 Kitasato		2	2
No Yes	Corynebacterium diphtheriae NCTC 13129		2	1
No Yes	Sanguibacter keddieii DSM 10542		8	6
No Yes	Kytococcus sedentarius DSM 20547		6	6
No Yes	Beutenbergia cavernae DSM 12333		21	16
No Yes	Leifsonia xyli ssp. xyli CTCB07		2	2
No Yes	Clavibacter michiganensis ssp. michiganensis NCPPB 382		6	6
No Yes	Jonesia denitrificans DSM 20603		4	3
No Yes	Brachybacterium faecium DSM 4810		2	2
No Yes	Xylanimonas cellulosilytica DSM 15894		8	8
No Yes	Kocuria rhizophila DC2201		4	4
No Yes	Rothia mucilaginosa DY-18		1	1
No Yes	Arthrobacter sp. FB24		13	11
No Yes	Arthrobacter chlorophenolicus A6		11	9
No Yes	Arthrobacter aurescens TC1		8	8
No Yes	Renibacterium salmoninarum ATCC 33209		2	2
No Yes	Micrococcus luteus NCTC 2665		2	2
No Yes	Cryptobacterium curtum DSM 15641		2	2
No Yes	Eggerthella lenta DSM 2243		3	3
No Yes	Slackia heliotrinireducens DSM 20476		5	5
No Yes	Atopobium parvulum DSM 20469		7	7
No Yes	Conexibacter woesei DSM 14684		34	32
No Yes	Rubrobacter xylanophilus DSM 9941		12	12
No Yes	Acidimicrobium ferrooxidans DSM 10331		2	2
No Yes	Denitrovibrio acetiphilus DSM 12809		24	23
No Yes	Deferribacter desulfuricans SSM1		26	23
No Yes	Kosmotoga olearia TBF 19.5.1		8	7
No Yes	Petrotoga mobilis SJ95		10	7
No Yes	Fervidobacterium nodosum Rt17-B1		11	11
No Yes	Thermosipho melanesiensis BI429		9	9
No Yes	Thermosipho africanus TCF52B		9	9
No Yes	Thermotoga lettingae TMO		13	12
No Yes	Thermotoga sp. RQ2		10	10
No Yes	Thermotoga naphthophila RKU-10		9	9
No Yes	Thermotoga petrophila RKU-1		10	10
No Yes	Thermotoga neapolitana DSM 4359		12	12
No Yes	Thermotoga maritima MSB8		10	10
No Yes	Dehalococcoides sp. CBDB1		1	1
No Yes	Dehalococcoides ethenogenes 195		1	1
No Yes	Thermomicrobium roseum DSM 5159		7	5
No Yes	Sphaerobacter thermophilus DSM 20745		25	19
No Yes	Herpetosiphon aurantiacus ATCC 23779		103	87
No Yes	Roseiflexus sp. RS-1		83	57
No Yes	Roseiflexus castenholzii DSM 13941		75	53
No Yes	Chloroflexus sp. Y-400-fl		60	40
No Yes	Chloroflexus aggregans DSM 9485		57	37
No Yes	Chloroflexus aurantiacus J-10-fl		59	39
No Yes	Sulfurihydrogenibium sp. YO3AOP1		21	17
No Yes	Sulfurihydrogenibium azorense Az-Fu1		19	16
No Yes	Persephonella marina EX-H1		23	20
No Yes	Hydrogenobaculum sp. Y04AAS1		17	13
No Yes	Thermocrinis albus DSM 14484		15	14
No Yes	Aquifex aeolicus VF5		14	12
No Yes	Hydrogenobacter thermophilus TK-6		17	15
No Yes	Gemmatimonas aurantiaca T-27		49	43
No Yes	Fibrobacter succinogenes ssp. succinogenes S85		25	23
No Yes	Candidatus Koribacter versatilis Ellin345		115	98
No Yes	Candidatus Solibacter usitatus Ellin6076		203	163
No Yes	Acidobacterium capsulatum ATCC 51196		40	35
No Yes	Elusimicrobium minutum Pei191		23	21
No Yes	uncultured Termite group 1 bacterium phylotype Rs-D17		5	5
No Yes	Pelodictyon phaeoclathratiforme BU-1		44	30
No Yes	Pelodictyon luteolum DSM 273		24	17
No Yes	Chlorobium chlorochromatii CaD3		30	25
No Yes	Chlorobium phaeobacteroides DSM 266		41	27
No Yes	Chlorobium phaeovibrioides DSM 265		20	14
No Yes	Chlorobium limicola DSM 245		23	21
No Yes	Chlorobaculum parvum NCIB 8327		19	17
No Yes	Chlorobium tepidum TLS		16	15
No Yes	Chloroherpeton thalassium ATCC 35110		61	51
No Yes	Prosthecochloris aestuarii DSM 271		22	17
No Yes	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2		4	3
No Yes	Prevotella ruminicola 23		38	32
No Yes	Parabacteroides distasonis ATCC 8503		46	38
No Yes	Porphyromonas gingivalis W83		32	22
No Yes	Bacteroides vulgatus ATCC 8482		29	26
No Yes	Bacteroides thetaiotaomicron VPI-5482		55	46
No Yes	Bacteroides fragilis NCTC 9343		50	43
No Yes	Candidatus Amoebophilus asiaticus 5a2		17	12
No Yes	Salinibacter ruber DSM 13855		29	22
No Yes	Rhodothermus marinus DSM 4252		47	37
No Yes	Chitinophaga pinensis DSM 2588		78	71
No Yes	Dyadobacter fermentans DSM 18053		51	41
No Yes	Cytophaga hutchinsonii ATCC 33406		53	44
No Yes	Spirosoma linguale DSM 74		67	63
No Yes	Pedobacter heparinus DSM 2366		34	31
No Yes	Candidatus Sulcia muelleri GWSS		1	1
No Yes	Zunongwangia profunda SM-A87		35	32
No Yes	Gramella forsetii KT0803		28	26
No Yes	Robiginitalea biformata HTCC2501		41	34
No Yes	Flavobacteriaceae bacterium 3519-10		19	18
No Yes	Capnocytophaga ochracea DSM 7271		17	14
No Yes	Flavobacterium psychrophilum JIP02/86		23	20
No Yes	Flavobacterium johnsoniae UW101		53	48
No Yes	Blattabacterium sp. Bge		1	1
No Yes	Dictyoglomus turgidum DSM 6724		7	6
No Yes	Dictyoglomus thermophilum H-6-12		8	8
No Yes	Candidatus Protochlamydia amoebophila UWE25		46	30
No Yes	Chlamydophila pneumoniae TW-183		11	11
No Yes	Chlamydophila caviae GPIC		11	9
No Yes	Chlamydophila felis Fe/C-56		9	9
No Yes	Chlamydophila abortus S26/3		9	8
No Yes	Chlamydia muridarum Nigg		9	9
No Yes	Chlamydia trachomatis D/UW-3/CX		9	9
No Yes	Coraliomargarita akajimensis DSM 45221		29	25
No Yes	Opitutus terrae PB90-1		62	55
No Yes	Methylacidiphilum infernorum V4		19	16
No Yes	Akkermansia muciniphila ATCC BAA-835		21	16
No Yes	Thermodesulfovibrio yellowstonii DSM 11347		29	22
No Yes	Streptobacillus moniliformis DSM 12112		6	6
No Yes	Sebaldella termitidis ATCC 33386		16	16
No Yes	Leptotrichia buccalis DSM 1135		14	13
No Yes	Fusobacterium nucleatum ssp. nucleatum ATCC 25586		16	9
No Yes	Thermobaculum terrenum ATCC BAA-798		16	8
No Yes	Deinococcus deserti VCD115		20	18
No Yes	Deinococcus geothermalis DSM 11300		14	14
No Yes	Deinococcus radiodurans R1		17	15
No Yes	Meiothermus ruber DSM 1279		31	23
No Yes	Thermus thermophilus HB27 (First sequenced)		16	14
No Yes	Natranaerobius thermophilus JW/NM-WN-LF		10	10
No Yes	Symbiobacterium thermophilum IAM 14863		17	16
No Yes	Anaerococcus prevotii DSM 20548		2	2
No Yes	Finegoldia magna ATCC 29328		1	1
No Yes	Clostridiales genomosp. BVAB3 UPII9-5		1	1
No Yes	Anaerocellum thermophilum DSM 6725		6	6
No Yes	Candidatus Desulforudis audaxviator MP104C		7	6
No Yes	Pelotomaculum thermopropionicum SI		7	7
No Yes	Desulfitobacterium hafniense Y51		17	16
No Yes	Desulfotomaculum reducens MI-1		14	13
No Yes	Desulfotomaculum acetoxidans DSM 771		8	8
No Yes	Eubacterium rectale ATCC 33656		12	12
No Yes	Eubacterium eligens ATCC 27750		5	5
No Yes	Syntrophomonas wolfei ssp. wolfei Goettingen		5	4
No Yes	Heliobacterium modesticaldum Ice1		7	7
No Yes	Alkaliphilus oremlandii OhILAs		5	5
No Yes	Alkaliphilus metalliredigens QYMF		16	15
No Yes	Clostridium phytofermentans ISDg		15	13
No Yes	Clostridium novyi NT		14	12
No Yes	Clostridium kluyveri DSM 555		11	11
No Yes	Clostridium cellulolyticum H10		9	8
No Yes	Clostridium beijerinckii NCIMB 8052		16	16
No Yes	Clostridium thermocellum ATCC 27405		21	17
No Yes	Clostridium tetani E88		14	14
No Yes	Clostridium perfringens 13		10	9
No Yes	Clostridium difficile 630		14	14
No Yes	Clostridium botulinum A ATCC 3502		19	19
No Yes	Clostridium acetobutylicum ATCC 824		29	26
No Yes	Veillonella parvula DSM 2008		2	2
No Yes	Acidaminococcus fermentans DSM 20731		3	3
No Yes	Caldicellulosiruptor saccharolyticus DSM 8903		6	6
No Yes	Coprothermobacter proteolyticus DSM 5265		2	2
No Yes	Carboxydothermus hydrogenoformans Z-2901		5	5
No Yes	Moorella thermoacetica ATCC 39073		5	5
No Yes	Ammonifex degensii KC4		8	7
No Yes	Thermoanaerobacter pseudethanolicus ATCC 33223		4	3
No Yes	Thermoanaerobacter sp. X514		3	2
No Yes	Thermoanaerobacter tengcongensis MB4		9	7
No Yes	Thermoanaerobacter italicus Ab9		8	6
No Yes	Halothermothrix orenii H 168		12	11
No Yes	Enterococcus faecalis V583		4	4
No Yes	Oenococcus oeni PSU-1		3	2
No Yes	Leuconostoc citreum KM20		2	2
No Yes	Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293		3	2
No Yes	Lactobacillus casei ATCC 334		4	4
No Yes	Lactobacillus crispatus ST1		3	2
No Yes	Lactobacillus rhamnosus GG		4	3
No Yes	Lactobacillus johnsonii NCC 533		4	3
No Yes	Lactobacillus salivarius UCC118		2	2
No Yes	Lactobacillus fermentum IFO 3956		4	3
No Yes	Lactobacillus sakei ssp. sakei 23K		4	4
No Yes	Lactobacillus reuteri DSM 20016		4	3
No Yes	Lactobacillus gasseri ATCC 33323		2	2
No Yes	Lactobacillus plantarum WCFS1		3	3
No Yes	Lactobacillus helveticus DPC 4571		3	2
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842		3	2
No Yes	Lactobacillus brevis ATCC 367		3	3
No Yes	Lactobacillus acidophilus NCFM		3	2
No Yes	Pediococcus pentosaceus ATCC 25745		5	3
No Yes	Lactococcus lactis ssp. lactis Il1403		2	1
No Yes	Streptococcus gallolyticus UCN34		3	2
No Yes	Streptococcus equi ssp. zooepidemicus MGCS10565		2	2
No Yes	Streptococcus dysgalactiae ssp. equisimilis GGS_124		3	2
No Yes	Streptococcus mitis B6		3	2
No Yes	Streptococcus uberis 0140J		1	1
No Yes	Streptococcus pyogenes M1 GAS		2	2
No Yes	Streptococcus pneumoniae TIGR4 (Virulent)		2	1
No Yes	Streptococcus agalactiae NEM316		1	1
No Yes	Streptococcus mutans UA159		1	1
No Yes	Streptococcus thermophilus LMG 18311 (Older strain)		1	1
No Yes	Streptococcus suis 05ZYH33		1	1
No Yes	Streptococcus sanguinis SK36		3	2
No Yes	Streptococcus gordonii Challis subCH1		4	3
No Yes	Exiguobacterium sp. AT1b		9	7
No Yes	Exiguobacterium sibiricum 255-15		8	7
No Yes	Bacillus tusciae DSM 2912		12	10
No Yes	Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446		7	6
No Yes	Brevibacillus brevis NBRC 100599		35	32
No Yes	Paenibacillus sp. JDR-2		24	21
No Yes	Listeria welshimeri ser. 6b SLCC5334		7	7
No Yes	Listeria innocua Clip11262		8	7
No Yes	Listeria seeligeri ser. 1/2b SLCC3954		8	7
No Yes	Listeria monocytogenes EGD-e		7	6
No Yes	Lysinibacillus sphaericus C3-41		19	18
No Yes	Oceanobacillus iheyensis HTE831		13	12
No Yes	Anoxybacillus flavithermus WK1		8	7
No Yes	Geobacillus sp. WCH70		6	5
No Yes	Geobacillus thermodenitrificans NG80-2		12	8
No Yes	Geobacillus kaustophilus HTA426		10	7
No Yes	Bacillus subtilis ssp. subtilis 168		21	19
No Yes	Bacillus licheniformis ATCC 14580		18	17
No Yes	Bacillus amyloliquefaciens FZB42		16	15
No Yes	Bacillus halodurans C-125		17	17
No Yes	Bacillus weihenstephanensis KBAB4		21	19
No Yes	Bacillus thuringiensis ser. konkukian 97-27		23	20
No Yes	Bacillus cereus ATCC 14579		22	18
No Yes	Bacillus anthracis Ames Ancestor		22	20
No Yes	Bacillus pseudofirmus OF4		9	8
No Yes	Bacillus clausii KSM-K16		19	19
No Yes	Bacillus pumilus SAFR-032		22	21
No Yes	Bacillus megaterium QM B1551		16	12
No Yes	Macrococcus caseolyticus JCSC5402		4	4
No Yes	Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305		5	4
No Yes	Staphylococcus lugdunensis HKU09-01		4	4
No Yes	Staphylococcus haemolyticus JCSC1435		5	4
No Yes	Staphylococcus epidermidis RP62A		4	4
No Yes	Staphylococcus carnosus ssp. carnosus TM300		4	4
No Yes	Staphylococcus aureus ssp. aureus NCTC 8325		4	4
No Yes	Nautilia profundicola AmH		10	9
No Yes	Sulfurospirillum deleyianum DSM 6946		8	7
No Yes	Arcobacter butzleri RM4018		8	8
No Yes	Campylobacter hominis ATCC BAA-381		5	5
No Yes	Campylobacter lari RM2100		10	8
No Yes	Campylobacter curvus 525.92		5	4
No Yes	Campylobacter concisus 13826		10	7
No Yes	Campylobacter jejuni ssp. jejuni NCTC 11168		7	6
No Yes	Campylobacter fetus ssp. fetus 82-40		7	6
No Yes	Sulfurimonas denitrificans DSM 1251		11	10
No Yes	Wolinella succinogenes DSM 1740		12	10
No Yes	Helicobacter hepaticus ATCC 51449		5	4
No Yes	Helicobacter mustelae 12198		8	6
No Yes	Helicobacter acinonychis Sheeba		4	3
No Yes	Helicobacter pylori 26695		2	2
No Yes	Nitratiruptor sp. SB155-2		12	11
No Yes	Sulfurovum sp. NBC37-1		7	7
No Yes	Bdellovibrio bacteriovorus HD100		45	36
No Yes	Syntrophus aciditrophicus SB		30	24
No Yes	Syntrophobacter fumaroxidans MPOB		40	36
No Yes	Desulfotalea psychrophila LSv54		27	23
No Yes	Desulfatibacillum alkenivorans AK-01		99	92
No Yes	Desulfobacterium autotrophicum HRM2		50	40
No Yes	Desulfococcus oleovorans Hxd3		57	53
No Yes	Desulfohalobium retbaense DSM 5692		27	26
No Yes	Desulfomicrobium baculatum DSM 4028		43	37
No Yes	Lawsonia intracellularis PHE/MN1-00		24	23
No Yes	Desulfovibrio magneticus RS-1		63	59
No Yes	Desulfovibrio vulgaris Hildenborough		32	30
No Yes	Desulfovibrio salexigens DSM 2638		60	55
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans G20		44	37
No Yes	Pelobacter propionicus DSM 2379		35	30
No Yes	Pelobacter carbinolicus DSM 2380		33	28
No Yes	Geobacter uraniireducens Rf4		53	40
No Yes	Geobacter sp. FRC-32		47	41
No Yes	Geobacter lovleyi SZ		49	42
No Yes	Geobacter bemidjiensis Bem		54	46
No Yes	Geobacter sulfurreducens PCA		37	31
No Yes	Geobacter metallireducens GS-15		40	34
No Yes	Haliangium ochraceum DSM 14365		207	152
No Yes	Sorangium cellulosum So ce 56		213	178
No Yes	Anaeromyxobacter sp. Fw109-5		103	84
No Yes	Anaeromyxobacter dehalogenans 2CP-C		103	80
No Yes	Myxococcus xanthus DK 1622		187	156
No Yes	Magnetococcus sp. MC-1		60	52
No Yes	Sideroxydans lithotrophicus ES-1		32	31
No Yes	Aromatoleum aromaticum EbN1		21	16
No Yes	Dechloromonas aromatica RCB		29	24
No Yes	Thauera sp. MZ1T		17	15
No Yes	Laribacter hongkongensis HLHK9		11	10
No Yes	Chromobacterium violaceum ATCC 12472		25	23
No Yes	Neisseria meningitidis Z2491		8	8
No Yes	Neisseria gonorrhoeae FA 1090		9	9
No Yes	Methylotenera mobilis JLW8		25	22
No Yes	Methylovorus sp. SIP3-4		31	27
No Yes	Methylobacillus flagellatus KT		21	19
No Yes	Thiobacillus denitrificans ATCC 25259		29	21
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		40	34
No Yes	Methylibium petroleiphilum PM1		20	18
No Yes	Leptothrix cholodnii SP-6		31	28
No Yes	Ralstonia eutropha JMP134		25	22
No Yes	Cupriavidus taiwanensis		22	22
No Yes	Ralstonia metallidurans CH34		25	21
No Yes	Ralstonia pickettii 12J		18	18
No Yes	Ralstonia solanacearum GMI1000		14	13
No Yes	Polynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1		18	16
No Yes	Burkholderia phytofirmans PsJN		33	29
No Yes	Burkholderia phymatum STM815		33	30
No Yes	Burkholderia thailandensis E264		20	17
No Yes	Burkholderia pseudomallei K96243		26	22
No Yes	Burkholderia mallei ATCC 23344		19	15
No Yes	Burkholderia sp. 383		39	35
No Yes	Burkholderia ambifaria AMMD		29	24
No Yes	Burkholderia cenocepacia AU 1054		24	22
No Yes	Burkholderia multivorans ATCC 17616		19	17
No Yes	Burkholderia vietnamiensis G4		27	22
No Yes	Burkholderia xenovorans LB400		35	33
No Yes	Burkholderia glumae BGR1		21	19
No Yes	Verminephrobacter eiseniae EF01-2		12	11
No Yes	Delftia acidovorans SPH-1		25	23
No Yes	Polaromonas sp. JS666		19	18
No Yes	Polaromonas naphthalenivorans CJ2		13	12
No Yes	Variovorax paradoxus S110		23	22
No Yes	Rhodoferax ferrireducens T118		23	21
No Yes	Diaphorobacter sp. TPSY		8	7
No Yes	Acidovorax sp. JS42		14	11
No Yes	Acidovorax citrulli AAC00-1		14	13
No Yes	Comamonas sp. CNB-1		17	16
No Yes	Herminiimonas arsenicoxydans		14	13
No Yes	Janthinobacterium sp. Marseille		27	23
No Yes	Bordetella petrii DSM 12804		16	13
No Yes	Bordetella avium 197N		11	9
No Yes	Bordetella pertussis Tohama I		15	14
No Yes	Bordetella parapertussis 12822		16	14
No Yes	Bordetella bronchiseptica RB50		21	18
No Yes	Nitrosospira multiformis ATCC 25196		30	23
No Yes	Nitrosomonas eutropha C91		16	14
No Yes	Nitrosomonas europaea ATCC 19718		24	16
No Yes	Caulobacter sp. K31		28	28
No Yes	Caulobacter crescentus CB15		24	22
No Yes	Caulobacter segnis ATCC 21756		23	22
No Yes	Phenylobacterium zucineum HLK1		29	27
No Yes	Erythrobacter litoralis HTCC2594		15	14
No Yes	Sphingopyxis alaskensis RB2256		23	21
No Yes	Novosphingobium aromaticivorans DSM 12444		24	24
No Yes	Sphingobium japonicum UT26S		25	23
No Yes	Sphingomonas wittichii RW1		39	36
No Yes	Zymomonas mobilis ssp. mobilis ZM4		14	14
No Yes	Maricaulis maris MCS10		30	28
No Yes	Hirschia baltica ATCC 49814		23	22
No Yes	Hyphomonas neptunium ATCC 15444		26	24
No Yes	Dinoroseobacter shibae DFL 12		26	21
No Yes	Jannaschia sp. CCS1		23	21
No Yes	Ruegeria sp. TM1040		16	16
No Yes	Ruegeria pomeroyi DSS-3		19	19
No Yes	Roseobacter denitrificans OCh 114		14	13
No Yes	Rhodobacter sphaeroides 2.4.1		12	11
No Yes	Rhodobacter capsulatus SB1003		10	9
No Yes	Paracoccus denitrificans PD1222		14	12
No Yes	Magnetospirillum magneticum AMB-1		48	45
No Yes	Rhodospirillum centenum SW		17	16
No Yes	Rhodospirillum rubrum ATCC 11170		35	30
No Yes	Azospirillum sp. B510		19	19
No Yes	Granulibacter bethesdensis CGDNIH1		13	11
No Yes	Gluconacetobacter diazotrophicus PAl 5		15	14
No Yes	Gluconobacter oxydans 621H		10	9
No Yes	Acetobacter pasteurianus IFO 3283-01		9	8
No Yes	alpha proteobacterium IMCC1322		13	12
No Yes	Candidatus Pelagibacter ubique HTCC1062		8	7
No Yes	Neorickettsia sennetsu Miyayama		3	3
No Yes	Neorickettsia risticii Illinois		3	3
No Yes	Ehrlichia chaffeensis Arkansas		2	2
No Yes	Ehrlichia canis Jake		4	4
No Yes	Ehrlichia ruminantium Welgevonden		3	3
No Yes	Anaplasma phagocytophilum HZ		3	3
No Yes	Anaplasma marginale St. Maries		4	4
No Yes	Anaplasma centrale Israel		4	4
No Yes	Orientia tsutsugamushi Boryong		17	14
No Yes	Rickettsia bellii RML369-C		13	11
No Yes	Rickettsia canadensis McKiel		3	3
No Yes	Rickettsia typhi Wilmington		3	3
No Yes	Rickettsia prowazekii Madrid E		3	3
No Yes	Rickettsia peacockii Rustic		4	4
No Yes	Rickettsia felis URRWXCal2		13	12
No Yes	Rickettsia massiliae MTU5		6	5
No Yes	Rickettsia africae ESF-5		6	6
No Yes	Rickettsia akari Hartford		4	4
No Yes	Rickettsia rickettsii Sheila Smith		4	4
No Yes	Rickettsia conorii Malish 7		5	5
No Yes	Wolbachia endosymbiont of Culex_quinquefasciatus Pel		5	5
No Yes	Wolbachia endosymbiont of Drosophila melanogaster (Genus only)		6	5
No Yes	Wolbachia endosymbiont TRS of Brugia malayi		5	5
No Yes	Wolbachia sp. wRi		6	6
No Yes	Xanthobacter autotrophicus Py2		26	23
No Yes	Azorhizobium caulinodans ORS 571		28	22
No Yes	Methylobacterium chloromethanicum CM4		14	12
No Yes	Methylobacterium extorquens PA1		14	12
No Yes	Methylobacterium sp. 4-46		36	33
No Yes	Methylobacterium populi BJ001		17	15
No Yes	Methylobacterium nodulans ORS 2060		46	36
No Yes	Methylobacterium radiotolerans JCM 2831		17	16
No Yes	Ochrobactrum anthropi ATCC 49188		12	11
No Yes	Brucella microti CCM 4915		12	11
No Yes	Brucella canis ATCC 23365		12	11
No Yes	Brucella suis 1330		12	11
No Yes	Brucella melitensis bv. 1 16M		11	10
No Yes	Brucella ovis ATCC 25840		11	10
No Yes	Brucella abortus bv. 1 9-941		10	9
No Yes	Sinorhizobium medicae WSM419		19	19
No Yes	Sinorhizobium meliloti 1021		17	17
No Yes	Rhizobium etli CFN 42		29	26
No Yes	Rhizobium sp. NGR234		21	20
No Yes	Rhizobium leguminosarum bv. viciae 3841		36	33
No Yes	Agrobacterium vitis S4		23	21
No Yes	Agrobacterium radiobacter K84		26	26
No Yes	Agrobacterium tumefaciens C58		18	18
No Yes	Candidatus Liberibacter asiaticus psy62		3	3
No Yes	Chelativorans sp. BNC1		17	16
No Yes	Parvibaculum lavamentivorans DS-1		24	22
No Yes	Mesorhizobium loti MAFF303099		49	42
No Yes	Methylocella silvestris BL2		22	17
No Yes	Beijerinckia indica ssp. indica ATCC 9039		26	22
No Yes	Oligotropha carboxidovorans OM5		17	15
No Yes	Rhodopseudomonas palustris CGA009		22	19
No Yes	Nitrobacter winogradskyi Nb-255		17	15
No Yes	Nitrobacter hamburgensis X14		19	17
No Yes	Bradyrhizobium sp. ORS278		48	42
No Yes	Bradyrhizobium japonicum USDA 110		55	53
No Yes	Bartonella tribocorum CIP 105476		5	5
No Yes	Bartonella henselae Houston-1		5	5
No Yes	Bartonella grahamii as4aup		5	5
No Yes	Bartonella quintana Toulouse		7	6
No Yes	Bartonella bacilliformis KC583		6	5
No Yes	Acidithiobacillus ferrooxidans ATCC 23270		19	18
No Yes	Mannheimia succiniciproducens MBEL55E		11	11
No Yes	Aggregatibacter aphrophilus NJ8700		11	11
No Yes	Aggregatibacter actinomycetemcomitans D11S-1		11	11
No Yes	Haemophilus somnus 129PT		6	6
No Yes	Pasteurella multocida ssp. multocida Pm70		12	12
No Yes	Haemophilus parasuis SH0165		10	10
No Yes	Haemophilus ducreyi 35000HP		7	7
No Yes	Haemophilus influenzae Rd KW20		7	7
No Yes	Actinobacillus succinogenes 130Z		9	9
No Yes	Actinobacillus pleuropneumoniae L20		14	14
No Yes	Tolumonas auensis DSM 9187		13	13
No Yes	Aeromonas salmonicida ssp. salmonicida A449		22	22
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		27	27
No Yes	Aliivibrio salmonicida LFI1238		21	20
No Yes	Vibrio fischeri ES114		35	32
No Yes	Vibrio parahaemolyticus RIMD 2210633		31	29
No Yes	Vibrio harveyi ATCC BAA-1116		28	27
No Yes	Vibrio sp. Ex25		30	27
No Yes	Vibrio splendidus LGP32		31	30
No Yes	Vibrio vulnificus YJ016 (Good annotation)		31	30
No Yes	Vibrio cholerae O1 biov. El Tor N16961		20	19
No Yes	Photobacterium profundum SS9		28	28
No Yes	Psychromonas ingrahamii 37		22	20
No Yes	Idiomarina loihiensis L2TR		16	15
No Yes	Shewanella piezotolerans WP3		29	27
No Yes	Shewanella loihica PV-4		26	25
No Yes	Shewanella halifaxensis HAW-EB4		28	26
No Yes	Shewanella sediminis HAW-EB3		31	30
No Yes	Shewanella denitrificans OS217		27	27
No Yes	Shewanella pealeana ATCC 700345		30	27
No Yes	Shewanella oneidensis MR-1		25	24
No Yes	Shewanella baltica OS155		23	22
No Yes	Shewanella woodyi ATCC 51908		39	38
No Yes	Shewanella sp. MR-7		23	21
No Yes	Shewanella amazonensis SB2B		26	23
No Yes	Shewanella violacea DSS12		24	23
No Yes	Shewanella frigidimarina NCIMB 400		27	25
No Yes	Shewanella putrefaciens CN-32		21	19
No Yes	Colwellia psychrerythraea 34H		45	37
No Yes	Pseudoalteromonas atlantica T6c		47	35
No Yes	Pseudoalteromonas haloplanktis TAC125		22	22
No Yes	Teredinibacter turnerae T7901		41	36
No Yes	Saccharophagus degradans 2-40		47	40
No Yes	Marinobacter aquaeolei VT8		35	30
No Yes	Alteromonas macleodii Deep ecotype		38	29
No Yes	Hahella chejuensis KCTC 2396		58	52
No Yes	Alcanivorax borkumensis SK2		15	14
No Yes	Marinomonas sp. MWYL1		21	20
No Yes	Chromohalobacter salexigens DSM 3043		14	13
No Yes	Methylococcus capsulatus Bath		21	20
No Yes	Dichelobacter nodosus VCS1703A		11	10
No Yes	Stenotrophomonas maltophilia R551-3		30	26
No Yes	Xylella fastidiosa 9a5c		16	14
No Yes	Xanthomonas axonopodis pv. citri 306		31	28
No Yes	Xanthomonas albilineans		21	18
No Yes	Xanthomonas oryzae pv. oryzae KACC10331		23	22
No Yes	Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)		25	23
No Yes	Halothiobacillus neapolitanus c2		11	9
No Yes	Alkalilimnicola ehrlichii MLHE-1		27	22
No Yes	Thioalkalivibrio sp. HL-EbGR7		27	23
No Yes	Halorhodospira halophila SL1		23	20
No Yes	Allochromatium vinosum DSM 180		19	19
No Yes	Nitrosococcus halophilus Nc4		36	30
No Yes	Nitrosococcus oceani ATCC 19707		29	24
No Yes	Coxiella burnetii RSA 493		7	7
No Yes	Legionella longbeachae NSW150		14	11
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		14	13
No Yes	Kangiella koreensis DSM 16069		23	21
No Yes	Candidatus Vesicomyosocius okutanii HA		4	4
No Yes	Candidatus Ruthia magnifica Cm		3	3
No Yes	Cronobacter turicensis z3032		14	13
No Yes	Cronobacter sakazakii ATCC BAA-894		13	12
No Yes	Dickeya zeae Ech1591		17	16
No Yes	Dickeya dadantii Ech703		14	11
No Yes	Candidatus Hamiltonella defensa 5AT		8	8
No Yes	Candidatus Blochmannia floridanus		1	1
No Yes	Pectobacterium wasabiae WPP163		18	16
No Yes	Pectobacterium atrosepticum SCRI1043		15	14
No Yes	Pectobacterium carotovorum ssp. carotovorum PC1		19	16
No Yes	Sodalis glossinidius morsitans		10	10
No Yes	Pantoea ananatis LMG 20103		15	14
No Yes	Wigglesworthia glossinidia		1	1
No Yes	Buchnera aphidicola APS		1	1
No Yes	Photorhabdus asymbiotica		15	14
No Yes	Photorhabdus luminescens ssp. laumondii TTO1		16	15
No Yes	Edwardsiella ictaluri 93-146		14	14
No Yes	Edwardsiella tarda EIB202		17	17
No Yes	Yersinia pseudotuberculosis IP 32953		14	14
No Yes	Yersinia pestis CO92		14	14
No Yes	Yersinia enterocolitica ssp. enterocolitica 8081		15	15
No Yes	Xenorhabdus bovienii SS-2004		10	10
No Yes	Shigella sonnei Ss046		14	13
No Yes	Shigella flexneri 2a 2457T		11	11
No Yes	Shigella dysenteriae Sd197		13	13
No Yes	Shigella boydii Sb227		12	11
No Yes	Serratia proteamaculans 568		15	14
No Yes	Salmonella enterica ssp. enterica ser. Typhimurium LT2		19	17
No Yes	Proteus mirabilis HI4320		13	13
No Yes	Klebsiella variicola At-22		13	11
No Yes	Klebsiella pneumoniae ssp. pneumoniae MGH 78578		14	12
No Yes	Escherichia fergusonii ATCC 35469		16	14
No Yes	Escherichia coli K-12 subMG1655		22	18
No Yes	Erwinia tasmaniensis Et1/99		13	12
No Yes	Erwinia pyrifoliae Ep1/96		12	12
No Yes	Erwinia amylovora ATCC 49946		12	12
No Yes	Enterobacter sp. 638		15	12
No Yes	Citrobacter rodentium ICC168		16	15
No Yes	Citrobacter koseri ATCC BAA-895		16	13
No Yes	Azotobacter vinelandii DJ		17	16
No Yes	Pseudomonas entomophila L48		19	18
No Yes	Pseudomonas syringae pv. tomato DC3000		17	16
No Yes	Pseudomonas stutzeri A1501		21	18
No Yes	Pseudomonas putida KT2440		17	16
No Yes	Pseudomonas fluorescens Pf-5		23	22
No Yes	Pseudomonas mendocina ymp		20	19
No Yes	Pseudomonas aeruginosa PAO1		22	20
No Yes	Cellvibrio japonicus Ueda107		34	30
No Yes	Psychrobacter sp. PRwf-1		9	9
No Yes	Psychrobacter arcticus 273-4		12	11
No Yes	Psychrobacter cryohalolentis K5		11	10
No Yes	Acinetobacter sp. ADP1		11	10
No Yes	Acinetobacter baumannii ATCC 17978		11	9
No Yes	Thiomicrospira crunogena XCL-2		14	13
No Yes	Francisella philomiragia ssp. philomiragia ATCC 25017		4	4
No Yes	Francisella tularensis ssp. tularensis SCHU S4		3	3
No Yes	Gloeobacter violaceus PCC 7421		54	48
No Yes	Acaryochloris marina MBIC11017		112	88
No Yes	Prochlorococcus marinus MIT 9313		26	18
No Yes	Nostoc punctiforme PCC 73102		97	81
No Yes	Nostoc sp. PCC 7120		72	63
No Yes	Anabaena variabilis ATCC 29413		77	67
No Yes	Trichodesmium erythraeum IMS101		199	122
No Yes	Thermosynechococcus elongatus BP-1		23	22
No Yes	cyanobacterium UCYN-A		13	13
No Yes	Cyanothece sp. ATCC 51142		43	42
No Yes	Synechocystis sp. PCC 6803		30	28
No Yes	Synechococcus elongatus PCC 6301		23	23
No Yes	Microcystis aeruginosa NIES-843		67	55
No Yes	Nitrosopumilus maritimus SCM1		13	13
No Yes	Methanocella paludicola SANAE		34	27
No Yes	Methanosaeta thermophila PT		9	5
No Yes	Methanococcoides burtonii DSM 6242		15	9
No Yes	Methanosarcina acetivorans C2A		55	36
No Yes	Methanosarcina mazei Go1		31	22
No Yes	Methanosarcina barkeri Fusaro		47	26
No Yes	Methanohalophilus mahii DSM 5219		8	5
No Yes	Methanosphaerula palustris E1-9c		14	13
No Yes	Candidatus Methanoregula boonei 6A8		35	16
No Yes	Methanospirillum hungatei JF-1		77	58
No Yes	Methanocorpusculum labreanum Z		14	10
No Yes	Methanoculleus marisnigri JR1		10	7
No Yes	Ferroglobus placidus DSM 10642		1	1
No Yes	Archaeoglobus profundus DSM 5631		3	3
No Yes	Archaeoglobus fulgidus DSM 4304		3	3
No Yes	Thermococcus onnurineus NA1		7	7
No Yes	Thermococcus kodakarensis KOD1		7	7
No Yes	Thermococcus gammatolerans EJ3		10	10
No Yes	Thermococcus sibiricus MM 739		4	4
No Yes	Pyrococcus horikoshii OT3		7	6
No Yes	Pyrococcus abyssi GE5		5	5
No Yes	Pyrococcus furiosus DSM 3638		5	5
No Yes	Thermoplasma volcanium GSS1		6	5
No Yes	Thermoplasma acidophilum DSM 1728		6	5
No Yes	Picrophilus torridus DSM 9790		1	1
No Yes	Haloquadratum walsbyi DSM 16790		1	1
No Yes	Halomicrobium mukohataei DSM 12286		1	1
No Yes	Halorhabdus utahensis DSM 12940		1	1
No Yes	Haloterrigena turkmenica DSM 5511		1	1
No Yes	Natronomonas pharaonis DSM 2160		1	1
No Yes	Natrialba magadii ATCC 43099		1	1
No Yes	Halorubrum lacusprofundi ATCC 49239		2	2
No Yes	Haloferax volcanii DS2		1	1
No Yes	Halobacterium salinarum R1		1	1
No Yes	Halobacterium sp. NRC-1		1	1
No Yes	Haloarcula marismortui ATCC 43049		1	1
No Yes	Methanocaldococcus sp. FS406-22		13	11
No Yes	Methanocaldococcus fervens AG86		6	5
No Yes	Methanocaldococcus vulcanius M7		9	6
No Yes	Methanocaldococcus jannaschii DSM 2661		15	10
No Yes	Methanococcus aeolicus Nankai-3		8	5
No Yes	Methanococcus maripaludis S2		6	6
No Yes	Methanococcus vannielii SB		11	9
No Yes	Methanothermobacter thermautotrophicus Delta H		9	9
No Yes	Methanosphaera stadtmanae DSM 3091		1	1
No Yes	Methanobrevibacter ruminantium M1		19	18
No Yes	Methanobrevibacter smithii ATCC 35061		14	13
No Yes	uncultured methanogenic archaeon RC-I		22	22
No Yes	Aciduliprofundum boonei T469		19	10
No Yes	Staphylothermus marinus F1		1	1
No Yes	Metallosphaera sedula DSM 5348		3	2
No Yes	Sulfolobus tokodaii 7		6	5
No Yes	Sulfolobus islandicus Y.N.15.51		6	5
No Yes	Sulfolobus solfataricus P2		4	4
No Yes	Sulfolobus acidocaldarius DSM 639		5	4
No Yes	Thermofilum pendens Hrk 5		1	1
No Yes	Caldivirga maquilingensis IC-167		1	1
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	163	134
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	112	99
No Yes	Cryptococcus neoformans var. grubii H99		54	44
No Yes	Cryptococcus neoformans B-3501A		53	42
No Yes	Ajellomyces dermatitidis ER-3		60	48
No Yes	Histoplasma capsulatum H143		60	48
No Yes	Histoplasma capsulatum H88		58	48
No Yes	Histoplasma capsulatum G186AR		58	47
No Yes	Paracoccidioides brasiliensis Pb01		52	42
No Yes	Paracoccidioides brasiliensis Pb03		52	44
No Yes	Coccidioides posadasii str. Silveira		59	49
No Yes	Coccidioides immitis RMSCC 3703		57	49
No Yes	Coccidioides immitis RMSCC 2394		58	46
No Yes	Coccidioides immitis H538.4		56	45
No Yes	Aspergillus fumigatus A1163		75	56
No Yes	Candida albicans WO-1		39	33
No Yes	Saccharomyces cerevisiae YJM789		50	38
No Yes	Saccharomyces cerevisiae RM11-1a		48	37
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	49	39
No Yes	Schizosaccharomyces pombe 972h-		54	41
No Yes	Batrachochytrium dendrobatidis JAM81		97	80
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	281	249
No Yes	Plasmodium falciparum HB3		28	26
No Yes	Plasmodium falciparum Dd2		20	20
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis JB197		49	44
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		52	47
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Ames)		49	43
No Yes	Treponema pallidum ssp. pallidum SS14		25	22
No Yes	Borrelia burgdorferi ZS7		19	19
No Yes	Bifidobacterium longum ssp. infantis ATCC 15697		2	2
No Yes	Bifidobacterium longum		2	2
No Yes	Bifidobacterium animalis ssp. lactis Bl-04		3	3
No Yes	Bifidobacterium animalis ssp. lactis DSM 10140		3	3
No Yes	Frankia sp. EAN1pec		49	46
No Yes	Propionibacterium acnes SK137		1	1
No Yes	Mycobacterium sp. KMS		11	11
No Yes	Mycobacterium sp. JLS		12	12
No Yes	Mycobacterium avium 104		7	7
No Yes	Mycobacterium tuberculosis KZN 1435		5	5
No Yes	Mycobacterium tuberculosis H37Ra		5	5
No Yes	Mycobacterium tuberculosis F11		5	5
No Yes	Mycobacterium tuberculosis CDC1551		6	6
No Yes	Mycobacterium bovis BCG Tokyo 172		6	6
No Yes	Mycobacterium bovis BCG Pasteur 1173P2		6	6
No Yes	Mycobacterium leprae Br4923		1	1
No Yes	Corynebacterium glutamicum R		2	2
No Yes	Corynebacterium glutamicum ATCC 13032 Bielefeld		2	2
No Yes	Clavibacter michiganensis ssp. sepedonicus		5	5
No Yes	Dehalococcoides sp. GT		1	1
No Yes	Dehalococcoides sp. VS		2	2
No Yes	Dehalococcoides sp. BAV1		1	1
No Yes	Chlorobium phaeobacteroides BS1		16	16
No Yes	Porphyromonas gingivalis ATCC 33277		36	24
No Yes	Bacteroides fragilis YCH46		52	44
No Yes	Salinibacter ruber		29	23
No Yes	Candidatus Sulcia muelleri DMIN		1	1
No Yes	Candidiatus Sulcia muelleri SMDSEM		2	1
No Yes	Blattabacterium sp. BPLAN		1	1
No Yes	Chlamydophila pneumoniae J138		11	11
No Yes	Chlamydophila pneumoniae CWL029		11	11
No Yes	Chlamydophila pneumoniae AR39		11	11
No Yes	Chlamydia trachomatis B/TZ1A828/OT		9	9
No Yes	Chlamydia trachomatis B/Jali20/OT		9	9
No Yes	Chlamydia trachomatis L2b/UCH-1/proctitis		9	9
No Yes	Chlamydia trachomatis 434/Bu		9	9
No Yes	Chlamydia trachomatis A/HAR-13		9	9
No Yes	Thermus thermophilus HB8		15	13
No Yes	Desulfitobacterium hafniense DCB-2		12	12
No Yes	Clostridium kluyveri NBRC 12016		11	11
No Yes	Clostridium perfringens SM101		11	10
No Yes	Clostridium perfringens ATCC 13124		9	8
No Yes	Clostridium difficile R20291		14	14
No Yes	Clostridium difficile CD196		14	14
No Yes	Clostridium botulinum F Langeland		17	17
No Yes	Clostridium botulinum E3 Alaska E43		13	13
No Yes	Clostridium botulinum B1 Okra		19	19
No Yes	Clostridium botulinum Ba4 657		18	18
No Yes	Clostridium botulinum B Eklund 17B		15	15
No Yes	Clostridium botulinum A2 Kyoto		20	20
No Yes	Clostridium botulinum A3 Loch Maree		22	20
No Yes	Clostridium botulinum A Hall		19	19
No Yes	Clostridium botulinum A ATCC 19397		19	19
No Yes	Lactobacillus casei BL23		4	4
No Yes	Lactobacillus rhamnosus Lc 705		3	3
No Yes	Lactobacillus johnsonii FI9785		3	2
No Yes	Lactobacillus reuteri JCM 1112		4	3
No Yes	Lactobacillus plantarum JDM1		4	4
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365		3	2
No Yes	Lactococcus lactis ssp. lactis KF147		2	1
No Yes	Lactococcus lactis ssp. cremoris MG1363		3	2
No Yes	Lactococcus lactis ssp. cremoris SK11		3	2
No Yes	Streptococcus equi ssp. equi 4047		1	1
No Yes	Streptococcus equi ssp. zooepidemicus		2	1
No Yes	Streptococcus pyogenes MGAS10750		2	2
No Yes	Streptococcus pyogenes MGAS10270		3	3
No Yes	Streptococcus pyogenes MGAS2096		2	2
No Yes	Streptococcus pyogenes MGAS9429		2	2
No Yes	Streptococcus pyogenes MGAS6180		2	2
No Yes	Streptococcus pyogenes NZ131		2	2
No Yes	Streptococcus pyogenes MGAS8232		2	2
No Yes	Streptococcus pyogenes MGAS10394		2	2
No Yes	Streptococcus pyogenes Manfredo		2	2
No Yes	Streptococcus pyogenes MGAS315		2	2
No Yes	Streptococcus pyogenes SSI-1		2	2
No Yes	Streptococcus pyogenes MGAS5005		2	2
No Yes	Streptococcus pneumoniae ATCC 700669		2	1
No Yes	Streptococcus pneumoniae CGSP14		2	1
No Yes	Streptococcus pneumoniae G54		2	1
No Yes	Streptococcus pneumoniae P1031		2	1
No Yes	Streptococcus pneumoniae JJA		2	1
No Yes	Streptococcus pneumoniae 70585		2	1
No Yes	Streptococcus pneumoniae Hungary19A-6		2	1
No Yes	Streptococcus pneumoniae Taiwan19F-14		2	1
No Yes	Streptococcus pneumoniae D39		2	1
No Yes	Streptococcus pneumoniae R6 (Non-virulent)		2	1
No Yes	Streptococcus agalactiae A909		1	1
No Yes	Streptococcus agalactiae 2603V/R		1	1
No Yes	Streptococcus mutans NN2025		1	1
No Yes	Streptococcus thermophilus LMD-9		2	2
No Yes	Streptococcus thermophilus CNRZ1066 (Younger strain)		1	1
No Yes	Streptococcus suis BM407		1	1
No Yes	Streptococcus suis SC84		1	1
No Yes	Streptococcus suis 98HAH33		1	1
No Yes	Streptococcus suis P1/7		1	1
No Yes	Listeria monocytogenes 08-5578		7	6
No Yes	Listeria monocytogenes 08-5923		7	6
No Yes	Listeria monocytogenes Clip80459		8	7
No Yes	Listeria monocytogenes HCC23		8	7
No Yes	Listeria monocytogenes 4b F2365		8	7
No Yes	Geobacillus sp. Y412MC61		11	8
No Yes	Geobacillus sp. Y412MC10		20	18
No Yes	Bacillus licheniformis ATCC 14580		19	18
No Yes	Bacillus cytotoxicus NVH 391-98		19	17
No Yes	Bacillus thuringiensis Al Hakam		25	21
No Yes	Bacillus cereus 03BB102		23	20
No Yes	Bacillus cereus AH820		25	20
No Yes	Bacillus cereus AH187		24	20
No Yes	Bacillus cereus B4264		23	19
No Yes	Bacillus cereus G9842		25	22
No Yes	Bacillus cereus Q1		24	19
No Yes	Bacillus cereus E33L		27	23
No Yes	Bacillus cereus ATCC 10987		25	21
No Yes	Bacillus anthracis A0248		18	17
No Yes	Bacillus anthracis CDC 684		24	22
No Yes	Bacillus anthracis Sterne		24	22
No Yes	Bacillus anthracis Ames		22	20
No Yes	Bacillus megaterium DSM319		16	12
No Yes	Staphylococcus epidermidis ATCC 12228		4	4
No Yes	Staphylococcus aureus RF122		5	4
No Yes	Staphylococcus aureus ssp. aureus ED98		4	4
No Yes	Staphylococcus aureus ssp. aureus Newman		4	4
No Yes	Staphylococcus aureus ssp. aureus Mu3		4	4
No Yes	Staphylococcus aureus ssp. aureus USA300_TCH1516		4	4
No Yes	Staphylococcus aureus ssp. aureus USA300_FPR3757		4	4
No Yes	Staphylococcus aureus ssp. aureus JH1		4	4
No Yes	Staphylococcus aureus ssp. aureus JH9		4	4
No Yes	Staphylococcus aureus ssp. aureus MSSA476		4	4
No Yes	Staphylococcus aureus ssp. aureus MRSA252		4	4
No Yes	Staphylococcus aureus ssp. aureus MW2		4	4
No Yes	Staphylococcus aureus ssp. aureus N315		4	4
No Yes	Staphylococcus aureus ssp. aureus Mu50		4	4
No Yes	Staphylococcus aureus ssp. aureus COL		4	4
No Yes	Campylobacter jejuni RM1221		6	5
No Yes	Campylobacter jejuni ssp. jejuni 81116		6	5
No Yes	Campylobacter jejuni ssp. jejuni 81-176		6	5
No Yes	Campylobacter jejuni ssp. doylei 269.97		8	7
No Yes	Helicobacter pylori B38		3	3
No Yes	Helicobacter pylori P12		4	3
No Yes	Helicobacter pylori G27		4	3
No Yes	Helicobacter pylori Shi470		2	2
No Yes	Helicobacter pylori HPAG1		3	3
No Yes	Helicobacter pylori J99		5	3
No Yes	Desulfovibrio vulgaris DP4		33	31
No Yes	Desulfovibrio vulgaris Miyazaki F		43	38
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans ATCC 27774		24	22
No Yes	Geobacter sp. M21		58	49
No Yes	Anaeromyxobacter sp. K		94	82
No Yes	Anaeromyxobacter dehalogenans 2CP-1		96	76
No Yes	Azoarcus sp. BH72		21	18
No Yes	Neisseria meningitidis alpha14		8	8
No Yes	Neisseria meningitidis 053442		8	8
No Yes	Neisseria meningitidis FAM18		8	8
No Yes	Neisseria meningitidis MC58		8	8
No Yes	Neisseria gonorrhoeae NCCP11945		10	10
No Yes	Ralstonia eutropha H16		27	24
No Yes	Ralstonia pickettii 12D		16	16
No Yes	Polynucleobacter necessarius ssp. necessarius STIR1		11	11
No Yes	Burkholderia sp. CCGE1002		37	29
No Yes	Burkholderia pseudomallei MSHR346		16	15
No Yes	Burkholderia pseudomallei 1106a		26	22
No Yes	Burkholderia pseudomallei 668		23	19
No Yes	Burkholderia pseudomallei 1710b		26	22
No Yes	Burkholderia mallei NCTC 10229		20	17
No Yes	Burkholderia mallei NCTC 10247		21	17
No Yes	Burkholderia mallei SAVP1		16	15
No Yes	Burkholderia ambifaria MC40-6		33	26
No Yes	Burkholderia cenocepacia MC0-3		27	23
No Yes	Burkholderia cenocepacia HI2424		24	22
No Yes	Burkholderia cenocepacia J2315		24	22
No Yes	Burkholderia multivorans ATCC 17616		18	16
No Yes	Caulobacter crescentus NA1000		25	23
No Yes	Zymomonas mobilis ssp. mobilis NCIMB 11163		17	14
No Yes	Rhodobacter sphaeroides KD131		17	14
No Yes	Rhodobacter sphaeroides ATCC 17025		16	13
No Yes	Rhodobacter sphaeroides ATCC 17029		15	12
No Yes	Gluconacetobacter diazotrophicus PAl 5		17	16
No Yes	Ehrlichia ruminantium Gardel		3	3
No Yes	Ehrlichia ruminantium Welgevonden		3	3
No Yes	Anaplasma marginale Florida		4	4
No Yes	Orientia tsutsugamushi Ikeda		25	22
No Yes	Rickettsia bellii OSU 85-389		12	11
No Yes	Rickettsia rickettsii Iowa		4	4
No Yes	Methylobacterium extorquens DM4		16	14
No Yes	Methylobacterium extorquens AM1		15	13
No Yes	Brucella suis ATCC 23445		10	10
No Yes	Brucella melitensis ATCC 23457		11	10
No Yes	Brucella abortus S19		10	9
No Yes	Brucella melitensis biov. Abortus 2308		10	9
No Yes	Rhizobium etli CIAT 652		29	27
No Yes	Rhizobium leguminosarum bv. trifolii WSM2304		29	28
No Yes	Rhizobium leguminosarum bv. trifolii WSM1325		31	29
No Yes	Rhodopseudomonas palustris TIE-1		30	23
No Yes	Rhodopseudomonas palustris HaA2		19	19
No Yes	Rhodopseudomonas palustris BisB5		26	24
No Yes	Rhodopseudomonas palustris BisB18		15	14
No Yes	Rhodopseudomonas palustris BisA53		28	24
No Yes	Bradyrhizobium sp. BTAi1		56	46
No Yes	Acidithiobacillus ferrooxidans ATCC 53993		18	16
No Yes	Haemophilus somnus 2336		5	5
No Yes	Haemophilus influenzae PittGG		5	5
No Yes	Haemophilus influenzae PittEE		7	7
No Yes	Haemophilus influenzae 86-028NP		7	7
No Yes	Actinobacillus pleuropneumoniae ser. 3 JL03		18	17
No Yes	Actinobacillus pleuropneumoniae ser. 7 AP76		17	16
No Yes	Vibrio fischeri MJ11		34	32
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		31	30
No Yes	Vibrio cholerae M66-2		21	20
No Yes	Vibrio cholerae O395		21	20
No Yes	Vibrio cholerae MJ-1236		21	20
No Yes	Shewanella sp. W3-18-1		21	19
No Yes	Shewanella sp. ANA-3		21	20
No Yes	Shewanella baltica OS223		19	18
No Yes	Shewanella baltica OS185		21	20
No Yes	Shewanella baltica OS195		22	21
No Yes	Shewanella sp. MR-4		22	21
No Yes	Stenotrophomonas maltophilia K279a		31	26
No Yes	Xylella fastidiosa M23		16	13
No Yes	Xylella fastidiosa M12		15	13
No Yes	Xylella fastidiosa Temecula1		16	13
No Yes	Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)		27	25
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		26	25
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		24	23
No Yes	Xanthomonas campestris pv. campestris B100		25	24
No Yes	Xanthomonas campestris pv. campestris 8004 (Completed 2005)		25	23
No Yes	Thioalkalivibrio sp. K90mix		16	14
No Yes	Coxiella burnetii CbuK_Q154		7	7
No Yes	Coxiella burnetii CbuG_Q212		7	7
No Yes	Coxiella burnetii Dugway 5J108-111		9	9
No Yes	Coxiella burnetii RSA 331		7	7
No Yes	Legionella pneumophila Corby		13	12
No Yes	Legionella pneumophila Paris		14	13
No Yes	Legionella pneumophila Lens		12	11
No Yes	Dickeya dadantii Ech586		17	14
No Yes	Candidatus Blochmannia pennsylvanicus BPEN		2	2
No Yes	Buchnera aphidicola Bp		1	1
No Yes	Buchnera aphidicola Tuc7		1	1
No Yes	Buchnera aphidicola 5A		1	1
No Yes	Buchnera aphidicola Sg		1	1
No Yes	Yersinia pseudotuberculosis PB1/+		13	13
No Yes	Yersinia pseudotuberculosis YPIII		14	14
No Yes	Yersinia pseudotuberculosis IP 31758		14	14
No Yes	Yersinia pestis Z176003		13	13
No Yes	Yersinia pestis Pestoides F		14	14
No Yes	Yersinia pestis Nepal516		13	13
No Yes	Yersinia pestis Antiqua		14	14
No Yes	Yersinia pestis Angola		13	13
No Yes	Yersinia pestis biov. Microtus 91001		14	14
No Yes	Yersinia pestis KIM		14	14
No Yes	Shigella flexneri 5 8401		13	13
No Yes	Shigella flexneri 2a 301		13	12
No Yes	Shigella boydii CDC 3083-94		10	10
No Yes	Salmonella enterica ssp. arizonae ser. 62:z4,z23:--		21	19
No Yes	Salmonella enterica ssp. enterica ser. Schwarzengrund CVM19633		18	16
No Yes	Salmonella enterica ssp. enterica ser. Enteritidis P125109		19	17
No Yes	Salmonella enterica ssp. enterica ser. Choleraesuis str. SC-B67		17	16
No Yes	Salmonella enterica ssp. enterica ser. Newport SL254		19	17
No Yes	Salmonella enterica ssp. enterica ser. Dublin CT_02021853		19	17
No Yes	Salmonella enterica ssp. enterica ser. Typhi CT18		18	18
No Yes	Salmonella enterica ssp. enterica ser. Typhi Ty2		18	18
No Yes	Salmonella enterica ssp. enterica ser. Agona SL483		20	18
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi C RKS4594		20	18
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi B SPB7		19	17
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A AKU_12601		17	15
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A ATCC 9150		18	16
No Yes	Salmonella enterica ssp. enterica ser. Heidelberg SL476		20	18
No Yes	Salmonella enterica ssp. enterica ser. Gallinarum 287/91		18	16
No Yes	Klebsiella pneumoniae 342		13	11
No Yes	Klebsiella pneumoniae NTUH-K2044		15	13
No Yes	Escherichia coli ED1a		16	15
No Yes	Escherichia coli IAI39		23	21
No Yes	Escherichia coli UMN026		20	18
No Yes	Escherichia coli 55989		19	17
No Yes	Escherichia coli S88		17	16
No Yes	Escherichia coli IAI1		18	16
No Yes	Escherichia coli BL21		16	15
No Yes	Escherichia coli ATCC 8739		19	17
No Yes	Escherichia coli BL21(DE3)		15	14
No Yes	Escherichia coli SMS-3-5		20	18
No Yes	Escherichia coli SE11		20	18
No Yes	Escherichia coli APEC O1		17	16
No Yes	Escherichia coli O103:H2 12009		20	18
No Yes	Escherichia coli UTI89		17	16
No Yes	Escherichia coli 536		18	16
No Yes	Escherichia coli HS		16	15
No Yes	Escherichia coli E24377A		19	17
No Yes	Escherichia coli O55:H7 CB9615		20	18
No Yes	Escherichia coli O26:H11 11368		20	17
No Yes	Escherichia coli CFT073		20	18
No Yes	Escherichia coli O111:H- 11128		17	15
No Yes	Escherichia coli O127:H6 E2348/69		16	15
No Yes	Escherichia coli O157:H7 EDL933		21	19
No Yes	Escherichia coli O157:H7 TW14359		20	19
No Yes	Escherichia coli O157:H7 EC4115		20	18
No Yes	Escherichia coli O157:H7 Sakai		20	19
No Yes	Escherichia coli BW2952		22	18
No Yes	Escherichia coli K-12 subW3110		22	18
No Yes	Escherichia coli K-12 subDH10B		24	19
No Yes	Escherichia coli B REL606		18	16
No Yes	Erwinia amylovora CFBP1430		12	12
No Yes	Pseudomonas syringae pv. phaseolicola 1448A		20	17
No Yes	Pseudomonas syringae pv. syringae B728a		17	15
No Yes	Pseudomonas putida W619		22	21
No Yes	Pseudomonas putida F1		19	17
No Yes	Pseudomonas putida GB-1		21	18
No Yes	Pseudomonas fluorescens SBW25		23	20
No Yes	Pseudomonas fluorescens Pf0-1		27	26
No Yes	Pseudomonas aeruginosa LESB58		21	20
No Yes	Pseudomonas aeruginosa PA7		22	20
No Yes	Pseudomonas aeruginosa UCBPP-PA14		22	20
No Yes	Acinetobacter baumannii AB307-0294		10	9
No Yes	Acinetobacter baumannii AYE		10	9
No Yes	Acinetobacter baumannii SDF		8	8
No Yes	Acinetobacter baumannii AB0057		11	10
No Yes	Acinetobacter baumannii ACICU		11	10
No Yes	Francisella novicida U112		3	3
No Yes	Francisella tularensis ssp. mediasiatica FSC147		3	3
No Yes	Francisella tularensis ssp. holarctica FTNF002-00		3	3
No Yes	Francisella tularensis ssp. holarctica OSU18		3	3
No Yes	Francisella tularensis ssp. holarctica		3	3
No Yes	Francisella tularensis ssp. tularensis WY96-3418		2	2
No Yes	Francisella tularensis ssp. tularensis FSC198		3	3
No Yes	Prochlorococcus marinus NATL1A		18	18
No Yes	Prochlorococcus marinus MIT 9301		9	9
No Yes	Prochlorococcus marinus MIT 9515		6	6
No Yes	Prochlorococcus marinus AS9601		9	9
No Yes	Prochlorococcus marinus ssp. marinus CCMP1375		6	6
No Yes	Prochlorococcus marinus ssp. pastoris CCMP1986		6	6
No Yes	Prochlorococcus marinus MIT 9215		8	8
No Yes	Prochlorococcus marinus MIT 9211		11	10
No Yes	Prochlorococcus marinus MIT 9312		8	7
No Yes	Prochlorococcus marinus MIT 9303		53	40
No Yes	Prochlorococcus marinus NATL2A		26	19
No Yes	Cyanothece sp. PCC 8802		58	53
No Yes	Cyanothece sp. PCC 7425		52	49
No Yes	Cyanothece sp. PCC 7424		75	65
No Yes	Cyanothece sp. PCC 8801		61	54
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		32	26
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		29	27
No Yes	Synechococcus sp. CC9902 (Poor annotation)		12	12
No Yes	Synechococcus sp. RCC307		13	13
No Yes	Synechococcus sp. CC9605 (Poor annotation)		11	11
No Yes	Synechococcus sp. WH 8102 (Good annotation)		15	15
No Yes	Synechococcus sp. CC9311		10	10
No Yes	Synechococcus sp. WH 7803		12	12
No Yes	Synechococcus sp. PCC 7002		23	23
No Yes	Synechococcus elongatus PCC 7942		23	23
No Yes	Methanococcus maripaludis C6		8	7
No Yes	Methanococcus maripaludis C7		8	7
No Yes	Methanococcus maripaludis C5		8	8
No Yes	Sulfolobus islandicus Y.G.57.14		6	5
No Yes	Sulfolobus islandicus L.S.2.15		5	4
No Yes	Sulfolobus islandicus M.16.27		6	5
No Yes	Sulfolobus islandicus M.14.25		6	5
No Yes	Sulfolobus islandicus M.16.4		5	4
No Yes	Sulfolobus islandicus L.D.8.5		5	4
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	192	153
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		41	40
No Yes	Lotus japonicus (Early assembly)		24	20
No Yes	Prunus persica (Early draft)	Peach	238	217
No Yes	Manihot esculenta (Early draft)	Cassava	319	281
No Yes	Ricinus communis (Early assembly)	Castor bean	204	181
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	236	213
No Yes	Phoenix dactylifera (Early draft)	Date palm	232	217
No Yes	Trypanosoma vivax (Parial)		94	79
No Yes	Trypanosoma congolense (Partial)		98	87
No Yes	Toxoplasma gondii GT1 (Early assembly)		63	57
No Yes	Toxoplasma gondii VEG (Early assembly)		63	59
No Yes	Toxoplasma gondii RH (Archived)		63	58
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	218	170
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	195	155
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	142	126
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	187	152
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	201	162
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	203	165
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	141	119
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	161	129
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	143	114
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	178	149
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	197	161
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	120	105
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	162	138
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	174	144
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	140	114
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	154	130
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	145	119
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	160	131
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	193	161
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	127	101
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	204	151
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	190	154
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	127	110
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	179	144
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	148	119
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	166	137
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	107	92
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	131	109
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	151	131
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	132	111
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	141	115
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	126	99
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	141	120
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	194	160
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	150	129
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	169	138
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	170	142
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	147	122
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	169	133
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	151	124
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	155	138
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	204	167
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	183	151
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	188	159
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	196	158
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		86	77
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		126	110
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	97	78
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	163	134
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	119	98
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	128	109
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	118	94
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	91	80
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	91	80
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	233	210
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	366	315
No Yes	NCBI viral sequences (Viral)		7	6
No Yes	PDB chains (SCOP 1.73) (PDB)		37	37
No Yes	TargetDB (Targets)		2948	2636
No Yes	UniProt 15.0 (UniProt)		40460	34501
No Yes	UniProt 15.0 viral sequences (Viral)		9	8