SH3-domain superfamily domain assignments
in
PDB chains (SCOP 1.75)

Select to display	Genome		Domains	Proteins
No Yes	ALL		125861	125861
No Yes	Homo sapiens 71_37	Human	1278	1000
No Yes	Pan troglodytes 71_2.1.4	Chimpanzee	244	191
No Yes	Gorilla gorilla 71_3.1	Western gorilla	356	277
No Yes	Pongo abelii 71_2	Sumatran orangutan	281	211
No Yes	Nomascus leucogenys 71_1.0	Northern white-cheeked gibbon	279	212
No Yes	Macaca mulatta 71_1	Rhesus monkey	492	376
No Yes	Callithrix jacchus 71_3.2.1	White-tufted-ear marmoset	717	550
No Yes	Otolemur garnettii 71_3	Small-eared galago	280	211
No Yes	Microcebus murinus 71_1	Gray mouse lemur	215	159
No Yes	Tarsius syrichta 71_1	Philippine tarsier	141	114
No Yes	Rattus norvegicus 71_5.0	Norway rat	361	267
No Yes	Mus musculus 71_38	House mouse	658	518
No Yes	Ictidomys tridecemlineatus 71_2	Thirteen-lined ground squirrel	259	197
No Yes	Dipodomys ordii 71_1	Ord's kangaroo rat	230	171
No Yes	Heterocephalus glaber v1.7-2	Naked mole-rat	277	206
No Yes	Cavia porcellus 71_3	Domestic guinea pig	288	214
No Yes	Oryctolagus cuniculus 71_2	Rabbit	357	269
No Yes	Ochotona princeps 71	American pika	216	164
No Yes	Tupaia belangeri 71	Northern tree shrew	181	142
No Yes	Sus scrofa 71_10.2	Pig	326	250
No Yes	Bos taurus 71_3.1	Cattle	295	219
No Yes	Vicugna pacos 71_1	Alpaca	127	97
No Yes	Tursiops truncatus 71_1	Bottlenosed dolphin	246	184
No Yes	Mustela putorius furo 71_1.0	Domestic ferret	266	199
No Yes	Ailuropoda melanoleuca 71_1	Giant panda	315	234
No Yes	Canis familiaris 71_3.1	Dog	365	274
No Yes	Felis catus 71_6.2	Domestic cat	285	210
No Yes	Equus caballus 71_2	Horse	354	255
No Yes	Myotis lucifugus 71_2.0	Little brown bat	256	191
No Yes	Pteropus vampyrus 71_1	Large flying fox	250	192
No Yes	Sorex araneus 71_1	European shrew	149	119
No Yes	Erinaceus europaeus 71	Western European hedgehog	178	137
No Yes	Procavia capensis 71_1	Cape rock hyrax	208	158
No Yes	Loxodonta africana 71_3	African savanna elephant	447	315
No Yes	Echinops telfairi 71	Small Madagascar hedgehog	201	155
No Yes	Dasypus novemcinctus 71_2	Nine-banded armadillo	166	126
No Yes	Choloepus hoffmanni 71_1	Hoffmann's two-fingered sloth	111	82
No Yes	Macropus eugenii 71_1.0	Tammar wallaby	210	159
No Yes	Sarcophilus harrisii 71_7.0	Tasmanian devil	299	222
No Yes	Monodelphis domestica 71_5	Gray short-tailed opossum	277	203
No Yes	Ornithorhynchus anatinus 71_5	Platypus	233	185
No Yes	Saccoglossus kowalevskii v3.0		363	240
No Yes	Petromyzon marinus 71_7.0	Sea lamprey	112	94
No Yes	Latimeria chalumnae 71_1	Coelacanth	305	232
No Yes	Anolis carolinensis 71_2.0	Green anole	259	197
No Yes	Taeniopygia guttata 71_3.2.4	Zebra finch	225	168
No Yes	Meleagris gallopavo 71_2	Turkey	267	202
No Yes	Gallus gallus 71_4	Chicken	268	202
No Yes	Pelodiscus sinensis 71_1.0	Chinese soft-shelled turtle	284	214
No Yes	Xenopus laevis	African clawed frog	417	321
No Yes	Xenopus tropicalis 71_4.2	Western clawed frog	357	261
No Yes	Danio rerio 71_9	Zebrafish	672	528
No Yes	Gadus morhua 71_1	Atlantic cod	326	250
No Yes	Gasterosteus aculeatus 71_1	Three-spined stickleback	436	334
No Yes	Oryzias latipes 71_1	Japanese medaka	401	316
No Yes	Xiphophorus maculatus 71_4.4.2	Southern platyfish	360	279
No Yes	Tetraodon nigroviridis 71_8	Spotted green pufferfish	467	358
No Yes	Takifugu rubripes 71_4	Torafugu	1232	958
No Yes	Oreochromis niloticus 71_1.0	Nile tilapia	500	386
No Yes	Branchiostoma floridae 1.0	Florida lancelet	304	229
No Yes	Oikopleura dioica		89	69
No Yes	Ciona savignyi 71_2.0	Pacific transparent sea squirt	225	190
No Yes	Ciona intestinalis 71	Vase tunicate	119	93
No Yes	Strongylocentrotus purpuratus v3.1	Purple sea urchin	148	110
No Yes	Lottia gigantea		107	81
No Yes	Helobdella robusta		132	114
No Yes	Capitella sp. I		135	101
No Yes	Danaus plexippus OGS1.0	Monarch butterfly	83	65
No Yes	Heliconius melpomene		18	17
No Yes	Heliconius numata		8	8
No Yes	Bombyx mori	Domestic silkworm	71	59
No Yes	Nasonia vitripennis	Jewel wasp	78	63
No Yes	Apis mellifera 38.2d (Not maintained)	Honey bee	175	146
No Yes	Harpegnathos saltator v3.3	Jerdon's jumping ant	91	66
No Yes	Linepithema humile v1.1	Argentine ant	93	68
No Yes	Solenopsis invicta v.2.2.3	Red fire ant	79	58
No Yes	Pogonomyrmex barbatus v1.2	Red harvester ant	96	69
No Yes	Acromyrmex echinatior v3.8	Panamanian leafcutter ant	94	69
No Yes	Atta cephalotes v1.1		93	69
No Yes	Camponotus floridanus v3.3	Florida carpenter ant	96	70
No Yes	Drosophila grimshawi 1.3		95	74
No Yes	Drosophila willistoni 1.3		87	68
No Yes	Drosophila pseudoobscura 2.13		85	65
No Yes	Drosophila persimilis 1.3		95	76
No Yes	Drosophila yakuba 1.3		84	67
No Yes	Drosophila simulans 1.3		75	58
No Yes	Drosophila sechellia 1.3		86	69
No Yes	Drosophila melanogaster 71_5	Fruit fly	421	315
No Yes	Drosophila erecta 1.3		88	68
No Yes	Drosophila ananassae 1.3		85	66
No Yes	Drosophila virilis 1.2		86	67
No Yes	Drosophila mojavensis 1.3		86	66
No Yes	Aedes aegypti 55 (Not maintained)	Yellow fever mosquito	98	77
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	85	66
No Yes	Anopheles gambiae 49_3j	African malaria mosquito	94	71
No Yes	Tribolium castaneum 3.0	Red flour beetle	91	75
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	89	71
No Yes	Acyrthosiphon pisum	Pea aphid	89	68
No Yes	Daphnia pulex	Common water flea	92	70
No Yes	Tetranychus urticae	Two-spotted spider mite	79	59
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	85	63
No Yes	Pristionchus pacificus		61	52
No Yes	Meloidogyne incognita	Southern root-knot nematode	71	62
No Yes	Meloidogyne hapla		33	32
No Yes	Brugia malayi WS218	Agent of lymphatic filariasis	83	66
No Yes	Caenorhabditis japonica		78	63
No Yes	Caenorhabditis brenneri		118	90
No Yes	Caenorhabditis remanei		101	77
No Yes	Caenorhabditis elegans 71_235	Nematode	205	152
No Yes	Caenorhabditis briggsae 2		84	63
No Yes	Hymenolepis microstoma		72	58
No Yes	Echinococcus multilocularis		73	64
No Yes	Echinococcus granulosus		72	63
No Yes	Taenia solium	Pork tapeworm	68	61
No Yes	Schistosoma mansoni		66	54
No Yes	Acropora digitifera v1.0		143	99
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	118	90
No Yes	Hydra magnipapillata		95	67
No Yes	Amphimedon queenslandica		260	215
No Yes	Trichoplax adhaerens		64	53
No Yes	Proterospongia sp. ATCC 50818		140	102
No Yes	Monosiga brevicollis		108	76
No Yes	Sphaeroforma arctica JP610		36	26
No Yes	Capsaspora owczarzaki ATCC 30864		111	86
No Yes	Malassezia globosa CBS 7966		37	31
No Yes	Ustilago maydis		30	23
No Yes	Wallemia sebi v1.0		28	22
No Yes	Mixia osmundae IAM 14324 v1.0		31	24
No Yes	Cronartium quercuum f. sp. fusiforme G11 v1.0		31	25
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		41	30
No Yes	Melampsora laricis-populina		35	27
No Yes	Rhodotorula graminis WP1 v1.0		29	22
No Yes	Sporobolomyces roseus IAM 13481		21	17
No Yes	Sphaerobolus stellatus v1.0		40	35
No Yes	Piloderma croceum F 1598 v1.0		42	35
No Yes	Serpula lacrymans var. lacrymans S7.9		20	17
No Yes	Coniophora puteana		33	28
No Yes	Hydnomerulius pinastri v2.0		44	35
No Yes	Paxillus rubicundulus Ve08.2h10 v1.0		36	28
No Yes	Pisolithus microcarpus 441 v1.0		56	41
No Yes	Pisolithus tinctorius Marx 270 v1.0		42	33
No Yes	Scleroderma citrinum Foug A v1.0		37	28
No Yes	Coprinopsis cinerea okayama7 130 v3		41	34
No Yes	Pleurotus ostreatus	Oyster mushroom	38	30
No Yes	Amanita thiersii Skay4041 v1.0		34	28
No Yes	Amanita muscaria Koide v1.0	Fly agaric	37	29
No Yes	Galerina marginata v1.0		39	32
No Yes	Hebeloma cylindrosporum h7 v2.0		40	33
No Yes	Laccaria bicolor S238N-H82		48	38
No Yes	Agaricus bisporus var. bisporus		38	32
No Yes	Schizophyllum commune		34	27
No Yes	Stereum hirsutum FP-91666 SS1 v1.0		38	31
No Yes	Heterobasidion annosum		30	23
No Yes	Gloeophyllum trabeumv1.0		37	30
No Yes	Punctularia strigosozonata v1.0		42	34
No Yes	Phanerochaete chrysosporium RP-78 2.1		28	21
No Yes	Sebacina vermifera MAFF 305830 v1.0		53	37
No Yes	Fomitiporia mediterranea v1.0		41	33
No Yes	Tulasnella calospora AL13/4D v1.0		54	43
No Yes	Postia placenta		53	42
No Yes	Wolfiporia cocos MD-104 SS10 v1.0		32	27
No Yes	Fomitopsis pinicolav1.0		34	27
No Yes	Fomitopsis pinicola FP-58527 SS1 v3.0		34	27
No Yes	Trametes versicolor v1.0		34	27
No Yes	Dichomitus squalens		30	25
No Yes	Tremella mesenterica		29	23
No Yes	Daldinia eschscholzii EC12 v1.0		32	27
No Yes	Magnaporthe grisea 70-15		30	25
No Yes	Apiospora montagnei NRRL 25634 v1.0		29	25
No Yes	Podospora anserina		31	25
No Yes	Sporotrichum thermophile ATCC 42464		30	25
No Yes	Thielavia terrestris NRRL 8126		31	26
No Yes	Chaetomium globosum CBS 148.51		29	25
No Yes	Neurospora tetrasperma		30	25
No Yes	Neurospora discreta FGSC 8579		28	23
No Yes	Neurospora crassa OR74A		29	24
No Yes	Cryphonectria parasitica	Chestnut blight fungus	31	26
No Yes	Verticillium dahliae VdLs.17		28	23
No Yes	Verticillium albo-atrum VaMs.102		27	23
No Yes	Acremonium alcalophilumv 1.0		465	384
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		24	21
No Yes	Nectria haematococca mpVI		28	23
No Yes	Fusarium verticillioides 7600		28	23
No Yes	Fusarium graminearum		29	24
No Yes	Trichoderma asperellum CBS 433.97 v1.0		29	24
No Yes	Trichoderma atroviride		29	24
No Yes	Trichoderma citrinoviride v1.0		28	24
No Yes	Trichoderma reesei 1.2		29	24
No Yes	Trichoderma longibrachiatum ATCC 18648 v1.0		28	23
No Yes	Trichoderma virens Gv29-8		29	24
No Yes	Trichoderma harzianum CBS 226.95 v1.0		29	24
No Yes	Amorphotheca resinae v1.0	Creosote fungus	28	24
No Yes	Botrytis cinerea B05.10		29	23
No Yes	Sclerotinia sclerotiorum		28	23
No Yes	Didymella exigua CBS 183.55 v1.0		29	24
No Yes	Alternaria brassicicola		25	21
No Yes	Setosphaeria turcica v1.0		29	25
No Yes	Pyrenophora tritici-repentis		30	25
No Yes	Cochliobolus miyabeanus ATCC 44560 v1.0		29	24
No Yes	Cochliobolus victoriae FI3 v1.0		29	24
No Yes	Cochliobolus lunatus m118 v2.0		29	24
No Yes	Cochliobolus carbonum 26-R-13 v1.0		29	24
No Yes	Cochliobolus heterostrophus		29	24
No Yes	Stagonospora nodorum		30	25
No Yes	Mycosphaerella graminicola IPO323		29	24
No Yes	Zasmidium cellare ATCC 36951 v1.0		30	25
No Yes	Mycosphaerella fijiensis CIRAD86		25	20
No Yes	Septoria musiva v1.0		29	24
No Yes	Dothistroma septosporum		32	26
No Yes	Aureobasidium pullulans var. subglaciale EXF-2481 v1.0		27	23
No Yes	Ajellomyces dermatitidis SLH14081		29	24
No Yes	Histoplasma capsulatum class NAmI strain WU24		25	20
No Yes	Microsporum canis CBS 113480		29	24
No Yes	Microsporum gypseum		27	22
No Yes	Arthroderma benhamiae CBS 112371		29	24
No Yes	Trichophyton equinum CBS 127.97		27	23
No Yes	Trichophyton verrucosum HKI 0517		28	24
No Yes	Trichophyton tonsurans CBS 112818		29	24
No Yes	Trichophyton rubrum CBS 118892		29	24
No Yes	Paracoccidioides brasiliensis Pb18		28	23
No Yes	Coccidioides posadasii RMSCC 3488		28	23
No Yes	Coccidioides immitis RS		29	24
No Yes	Uncinocarpus reesii 1704		28	23
No Yes	Neosartorya fischeri NRRL 181		29	24
No Yes	Penicillium chrysogenum Wisconsin 54-1255		29	24
No Yes	Penicillium chrysogenum v1.0		29	24
No Yes	Penicillium marneffei ATCC 18224		32	27
No Yes	Aspergillus acidus v1.0		30	25
No Yes	Aspergillus fumigatus Af293		30	25
No Yes	Aspergillus brasiliensis v1.0		30	25
No Yes	Aspergillus sydowii v1.0		30	25
No Yes	Aspergillus versicolor v1.0		30	25
No Yes	Aspergillus zonatus v1.0		29	24
No Yes	Aspergillus carbonarius ITEM 5010		30	25
No Yes	Aspergillus terreus NIH2624		27	23
No Yes	Aspergillus tubingensis v1.0		30	25
No Yes	Aspergillus wentii v1.0		31	26
No Yes	Aspergillus oryzae RIB40		27	22
No Yes	Aspergillus niger ATCC 1015		19	18
No Yes	Aspergillus flavus NRRL3357		29	24
No Yes	Aspergillus clavatus NRRL 1		30	25
No Yes	Aspergillus glaucus v1.0		29	24
No Yes	Aspergillus nidulans FGSC A4		30	25
No Yes	Tuber melanosporum Vittad	Perigord truffle	27	22
No Yes	Pichia membranifaciensv1.0		25	20
No Yes	Babjeviella inositovora NRRL Y-12698 v1.0		25	20
No Yes	Pichia stipitis CBS 6054		27	22
No Yes	Candida guilliermondii ATCC 6260		29	24
No Yes	Lodderomyces elongisporus NRRL YB-4239		25	24
No Yes	Debaromyces hansenii		28	23
No Yes	Hansenula polymorpha v2.0		23	18
No Yes	Candida tanzawaensis NRRL Y-17324 v1.0		28	23
No Yes	Candida dubliniensis CD36		29	24
No Yes	Candida tropicalis MYA-3404		28	23
No Yes	Candida parapsilosis		26	24
No Yes	Candida albicans SC5314		29	24
No Yes	Wickerhamomyces anomalus		25	21
No Yes	Hanseniaspora valbyensis NRRL Y-1626 v1.1		19	17
No Yes	Yarrowia lipolytica CLIB122		26	21
No Yes	Hyphopichia burtonii NRRL Y-1933 v1.0		28	23
No Yes	Candida lusitaniae ATCC 42720		25	22
No Yes	Metschnikowia bicuspidata NRRL YB-4993 v1.0		29	24
No Yes	Pichia pastoris GS115		26	21
No Yes	Vanderwaltozyma polyspora DSM 70294		29	25
No Yes	Candida glabrata CBS138		29	25
No Yes	Kluyveromyces thermotolerans CBS 6340		25	21
No Yes	Lachancea kluyveri		25	21
No Yes	Kluyveromyces waltii		25	21
No Yes	Ashbya gossypii ATCC 10895		26	22
No Yes	Dekkera bruxellensis CBS 2499 v2.0		23	20
No Yes	Zygosaccharomyces rouxii		26	22
No Yes	Saccharomyces mikatae MIT		27	23
No Yes	Saccharomyces paradoxus MIT		28	24
No Yes	Saccharomyces cerevisiae 71_4	Baker's yeast	27	23
No Yes	Saccharomyces bayanus MIT		26	22
No Yes	Kluyveromyces lactis		25	21
No Yes	Schizosaccharomyces octosporus yFS286		26	21
No Yes	Schizosaccharomyces japonicus yFS275		25	20
No Yes	Schizosaccharomyces pombe	Fission yeast	26	21
No Yes	Catenaria anguillulae PL171 v1.0		64	53
No Yes	Allomyces macrogynus ATCC 38327		140	120
No Yes	Mortierella verticillata NRRL 6337		60	46
No Yes	Conidiobolus coronatus NRRL28638 v1.0		36	30
No Yes	Rhizopus oryzae RA 99-880		69	58
No Yes	Phycomyces blakesleeanus		64	52
No Yes	Mucor circinelloides		73	59
No Yes	Spizellomyces punctatus DAOM BR117		87	77
No Yes	Dictyostelium discoideum		36	31
No Yes	Dictyostelium purpureum		30	27
No Yes	Entamoeba dispar 1.2		47	32
No Yes	Entamoeba invadens 1.2		46	29
No Yes	Entamoeba histolytica 1		44	30
No Yes	Eucalyptus grandis v201	Rose gum	7	7
No Yes	Theobroma cacao B97-61/B2 v1	Cacao	4	4
No Yes	Gossypium raimondii v221		9	9
No Yes	Citrus clementina v165		18	18
No Yes	Citrus sinensis v154	Apfelsine	5	5
No Yes	Thellungiella halophila v173		5	5
No Yes	Brassica rapa Chiifu-401 1.2	Field mustard	7	7
No Yes	Capsella rubella v183		6	6
No Yes	Arabidopsis lyrata	Lyrate rockcress	5	5
No Yes	Arabidopsis thaliana 10	Thale cress	8	8
No Yes	Carica papaya	Papaya	3	3
No Yes	Medicago truncatula	Barrel medic	4	4
No Yes	Phaseolus vulgaris v186	French bean	8	8
No Yes	Glycine max v109	Soybean	14	14
No Yes	Cucumis sativus v122	Cucumber	4	4
No Yes	Fragaria vesca	Alpine strawberry	5	5
No Yes	Malus domestica v196	Apple	3	3
No Yes	Prunus persica v139	Peach	4	4
No Yes	Linum usitatissimum v200	Flax	13	13
No Yes	Manihot esculenta v147	Cassava	7	7
No Yes	Populus trichocarpa v156	Black cottonwood	7	7
No Yes	Vitis vinifera	Wine grape	6	6
No Yes	Mimulus guttatus v140	Spotted monkey flower	7	7
No Yes	Solanum lycopersicum v.2.3	Tomato	5	5
No Yes	Solanum tuberosum	Potato	6	6
No Yes	Aquilegia coerulea v195		13	13
No Yes	Brachypodium distachyon		5	5
No Yes	Oryza glaberrima	African rice	2	2
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	5	5
No Yes	Oryza sativa v193	Rice	5	5
No Yes	Zea mays subsp. mays	Maize	15	15
No Yes	Zea mays v181	Maize	16	16
No Yes	Sorghum bicolor	Sorghum	5	5
No Yes	Setaria italica v164	Foxtail millet	5	5
No Yes	Panicum virgatum v202	Switchgrass	12	12
No Yes	Selaginella moellendorffii		6	6
No Yes	Physcomitrella patens subsp. patens		8	8
No Yes	Coccomyxa sp. C-169		2	1
No Yes	Asterochloris sp. Cgr/DA1pho v1.0		2	1
No Yes	Chlorella sp. NC64A		2	1
No Yes	Chlorella vulgaris		2	1
No Yes	Volvox carteri f. nagariensis		2	1
No Yes	Volvox carteri v199		2	1
No Yes	Thecamonas trahens ATCC 50062		125	96
No Yes	Trypanosoma vivax		3	3
No Yes	Trypanosoma cruzi strain CL Brener		8	6
No Yes	Trypanosoma congolense 2.4		4	4
No Yes	Trypanosoma brucei TREU927 v4.1		4	4
No Yes	Trypanosoma brucei gambiense v4.1		4	4
No Yes	Leishmania mexicana 2.4		7	5
No Yes	Leishmania major strain Friedlin		7	5
No Yes	Leishmania infantum JPCM5 2.4		7	5
No Yes	Leishmania braziliensis MHOM/BR/75/M2904 2.4		7	5
No Yes	Ectocarpus siliculosus		11	9
No Yes	Aureococcus anophagefferens		17	16
No Yes	Pythium ultimum v1.7-2		6	4
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	3	3
No Yes	Phytophthora sojae 1.1		4	3
No Yes	Phytophthora infestans T30-4		5	4
No Yes	Phytophthora capsici		3	3
No Yes	Fragilariopsis cylindrus		2	2
No Yes	Thalassiosira pseudonana CCMP1335		2	2
No Yes	Perkinsus marinus ATCC 50983		21	17
No Yes	Paramecium tetraurelia		5	5
No Yes	Tetrahymena thermophila SB210 1		5	5
No Yes	Babesia bovis T2Bo		2	2
No Yes	Theileria parva		1	1
No Yes	Theileria annulata		1	1
No Yes	Neospora caninum		1	1
No Yes	Toxoplasma gondii VEG		1	1
No Yes	Toxoplasma gondii ME49		1	1
No Yes	Toxoplasma gondii GT1		1	1
No Yes	Naegleria gruberi		16	13
No Yes	Trichomonas vaginalis		28	24
No Yes	Emiliania huxleyi CCMP1516		13	11
No Yes	Turneriella parva DSM 21527		1	1
No Yes	Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'		1	1
No Yes	Kytococcus sedentarius DSM 20547		1	1
No Yes	Arthrobacter arilaitensis Re117		1	1
No Yes	Deferribacter desulfuricans SSM1		1	1
No Yes	Caldilinea aerophila DSM 14535 = NBRC 104270		1	1
No Yes	Marivirga tractuosa DSM 4126		1	1
No Yes	Prevotella intermedia 17		1	1
No Yes	Porphyromonas gingivalis ATCC 33277		1	1
No Yes	Bacteroides salanitronis DSM 18170		1	1
No Yes	Bacteroides thetaiotaomicron VPI-5482		2	1
No Yes	Niastella koreensis GR20-10		2	2
No Yes	Chitinophaga pinensis DSM 2588		1	1
No Yes	Haliscomenobacter hydrossis DSM 1100		1	1
No Yes	Sphingobacterium sp. 21		2	1
No Yes	Lacinutrix sp. 5H-3-7-4		1	1
No Yes	Cellulophaga algicola DSM 14237		1	1
No Yes	Flavobacteriaceae bacterium 3519-10		1	1
No Yes	Riemerella anatipestifer ATCC 11845 = DSM 15868		1	1
No Yes	Candidatus Protochlamydia amoebophila UWE25		1	1
No Yes	Methylacidiphilum infernorum V4		1	1
No Yes	Sebaldella termitidis ATCC 33386		1	1
No Yes	Leptotrichia buccalis C-1013-b		1	1
No Yes	Acidaminococcus intestini RyC-MR95		1	1
No Yes	Acidaminococcus fermentans DSM 20731		1	1
No Yes	Symbiobacterium thermophilum IAM 14863		1	1
No Yes	Anaerococcus prevotii DSM 20548		1	1
No Yes	Thermincola potens JR		1	1
No Yes	Pelotomaculum thermopropionicum SI		1	1
No Yes	Desulfitobacterium hafniense Y51		1	1
No Yes	Desulfotomaculum acetoxidans DSM 771		2	2
No Yes	Desulfotomaculum kuznetsovii DSM 6115		1	1
No Yes	Clostridium sticklandii DSM 519		1	1
No Yes	Clostridium difficile 630		5	4
No Yes	Clostridium lentocellum DSM 5427		1	1
No Yes	Roseburia hominis A2-183		1	1
No Yes	Syntrophothermus lipocalidus DSM 12680		1	1
No Yes	Alkaliphilus oremlandii OhILAs		1	1
No Yes	Clostridium sp. BNL1100		2	2
No Yes	Clostridium saccharolyticum WM1		1	1
No Yes	Clostridium cellulolyticum H10		2	2
No Yes	Clostridium thermocellum ATCC 27405		1	1
No Yes	Clostridium perfringens ATCC 13124		7	6
No Yes	Mahella australiensis 50-1 BON		1	1
No Yes	Thermoanaerobacter tengcongensis MB4		3	2
No Yes	Moorella thermoacetica ATCC 39073		1	1
No Yes	Ammonifex degensii KC4		1	1
No Yes	Thermoanaerobacter mathranii subsp. mathranii str. A3		2	1
No Yes	Thermoanaerobacter pseudethanolicus ATCC 33223		2	1
No Yes	Thermoanaerobacter sp. X514		2	1
No Yes	Thermoanaerobacter italicus Ab9		2	1
No Yes	Thermoanaerobacter wiegelii Rt8.B1		1	1
No Yes	Thermoanaerobacter brockii subsp. finnii Ako-1		2	1
No Yes	Oenococcus oeni PSU-1		1	1
No Yes	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293		1	1
No Yes	Streptococcus infantarius subsp. infantarius CJ18		1	1
No Yes	Exiguobacterium sp. AT1b		2	2
No Yes	Brevibacillus brevis NBRC 100599		1	1
No Yes	Paenibacillus mucilaginosus 3016		3	3
No Yes	Listeria welshimeri serovar 6b str. SLCC5334		2	1
No Yes	Listeria innocua Clip11262		2	1
No Yes	Listeria seeligeri serovar 1/2b str. SLCC3954		2	1
No Yes	Listeria monocytogenes serotype 4b str. CLIP 80459		2	1
No Yes	Listeria ivanovii subsp. ivanovii PAM 55		2	1
No Yes	Lysinibacillus sphaericus C3-41		1	1
No Yes	Anoxybacillus flavithermus WK1		1	1
No Yes	Geobacillus thermoleovorans CCB_US3_UF5		4	2
No Yes	Geobacillus kaustophilus HTA426		2	1
No Yes	Geobacillus thermoglucosidasius C56-YS93		2	2
No Yes	Bacillus sp. JS		1	1
No Yes	Bacillus subtilis subsp. subtilis str. 168		1	1
No Yes	Bacillus halodurans C-125		1	1
No Yes	Bacillus weihenstephanensis KBAB4		1	1
No Yes	Bacillus thuringiensis str. Al Hakam		2	2
No Yes	Bacillus cereus 03BB102		2	2
No Yes	Bacillus anthracis str. A0248		2	2
No Yes	Bacillus clausii KSM-K16		11	2
No Yes	Bacillus megaterium DSM 319		5	2
No Yes	Bacillus coagulans 2-6		2	1
No Yes	Desulfarculus baarsii DSM 2075		1	1
No Yes	Desulfobacca acetoxidans DSM 11109		1	1
No Yes	Pelobacter propionicus DSM 2379		1	1
No Yes	Methylovorus sp. MP688		1	1
No Yes	Methylovorus glucosetrophus SIP3-4		1	1
No Yes	Acidovorax avenae subsp. avenae ATCC 19860		1	1
No Yes	Achromobacter xylosoxidans A8		2	1
No Yes	Magnetococcus marinus MC-1		1	1
No Yes	Ruegeria sp. TM1040		1	1
No Yes	Rhodospirillum rubrum F11		2	1
No Yes	Starkeya novella DSM 506		1	1
No Yes	Sinorhizobium medicae WSM419		3	2
No Yes	Sinorhizobium meliloti AK83		1	1
No Yes	Rhizobium etli CIAT 652		1	1
No Yes	Pelagibacterium halotolerans B2		2	2
No Yes	Oligotropha carboxidovorans OM4		1	1
No Yes	Rhodopseudomonas palustris BisA53		1	1
No Yes	Nitrobacter winogradskyi Nb-255		1	1
No Yes	Nitrobacter hamburgensis X14		1	1
No Yes	Bradyrhizobium japonicum USDA 110		1	1
No Yes	Bartonella tribocorum CIP 105476		1	1
No Yes	Haemophilus parasuis SH0165		1	1
No Yes	Vibrio anguillarum 775		2	1
No Yes	Shewanella halifaxensis HAW-EB4		1	1
No Yes	Marinomonas mediterranea MMB-1		2	1
No Yes	Pseudoxanthomonas spadix BD-a59		1	1
No Yes	Stenotrophomonas maltophilia K279a		4	2
No Yes	Xanthomonas axonopodis pv. citri str. 306		1	1
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		1	1
No Yes	Xanthomonas campestris pv. campestris str. B100		2	1
No Yes	Rahnella aquatilis CIP 78.65 = ATCC 33071		2	1
No Yes	Xenorhabdus nematophila ATCC 19061		1	1
No Yes	Pseudomonas entomophila L48		2	1
No Yes	Haloferax mediterranei ATCC 33500		2	1
No Yes	Methanococcus vannielii SB		1	1
No Yes	Xenopus (Silurana) tropicalis v7.1 (annotation v7.2)	Western clawed frog	460	350
No Yes	Drosophila melanogaster FlyBase 5.12 (FlyBase)	Fruit fly	271	208
No Yes	Anopheles gambiae VectorBase AgamP3.6 (VectorBase)	African malaria mosquito	113	89
No Yes	Ascaris suum Victoria/Ghent	Pig roundworm	81	64
No Yes	Caenorhabditis elegans WormBase WS218 (WormBase)	Nematode	144	114
No Yes	Cryptococcus neoformans var. grubii H99		28	22
No Yes	Cryptococcus neoformans B-3501A		31	24
No Yes	Cryptococcus neoformans JEC21		28	21
No Yes	Ajellomyces dermatitidis ER-3		29	24
No Yes	Histoplasma capsulatum H143		26	21
No Yes	Histoplasma capsulatum H88		28	23
No Yes	Histoplasma capsulatum G186AR		29	24
No Yes	Paracoccidioides brasiliensis Pb01		26	21
No Yes	Paracoccidioides brasiliensis Pb03		28	23
No Yes	Coccidioides posadasii str. Silveira		26	21
No Yes	Coccidioides immitis RMSCC 3703		29	24
No Yes	Coccidioides immitis RMSCC 2394		27	22
No Yes	Coccidioides immitis H538.4		25	20
No Yes	Aspergillus fumigatus A1163		30	25
No Yes	Candida albicans WO-1		26	21
No Yes	Saccharomyces cerevisiae UC5		24	22
No Yes	Saccharomyces cerevisiae PW5		18	18
No Yes	Saccharomyces cerevisiae FL100		20	16
No Yes	Saccharomyces cerevisiae CLIB382		1	1
No Yes	Saccharomyces cerevisiae CLIB324		10	7
No Yes	Saccharomyces cerevisiae CBS7960		20	16
No Yes	Saccharomyces cerevisiae YJM269		23	19
No Yes	Saccharomyces cerevisiae T7		27	23
No Yes	Saccharomyces cerevisiae FostersB		13	12
No Yes	Saccharomyces cerevisiae FostersO		14	13
No Yes	Saccharomyces cerevisiae VL3		18	17
No Yes	Saccharomyces cerevisiae Vin13		19	16
No Yes	Saccharomyces cerevisiae LalvinQA23		19	17
No Yes	Saccharomyces cerevisiae AWRI796		17	15
No Yes	Saccharomyces cerevisiae Sigma1278b		27	23
No Yes	Saccharomyces cerevisiae W303		26	22
No Yes	Saccharomyces cerevisiae JAY291		26	22
No Yes	Saccharomyces cerevisiae AWRI1631		14	13
No Yes	Saccharomyces cerevisiae YPS163		5	5
No Yes	Saccharomyces cerevisiae M22		6	5
No Yes	Saccharomyces cerevisiae T73		10	9
No Yes	Saccharomyces cerevisiae CLIB215		13	11
No Yes	Saccharomyces cerevisiae Y10		9	8
No Yes	Saccharomyces cerevisiae YJM789		28	24
No Yes	Saccharomyces cerevisiae YJM789		27	23
No Yes	Saccharomyces cerevisiae RM11-1a		27	23
No Yes	Saccharomyces cerevisiae RM11-1a		28	24
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	28	24
No Yes	Schizosaccharomyces pombe 972h-		26	21
No Yes	Batrachochytrium dendrobatidis JEL423		60	50
No Yes	Batrachochytrium dendrobatidis JAM81		56	47
No Yes	Theobroma cacao Matina 1-6 v0.9	Cacao	4	4
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	6	6
No Yes	Trypanosoma brucei Lister 427 v4.1		4	4
No Yes	Neospora caninum Nc-Liverpool 6.2		1	1
No Yes	Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'		1	1
No Yes	Porphyromonas gingivalis TDC60		1	1
No Yes	Porphyromonas gingivalis W83		1	1
No Yes	Riemerella anatipestifer RA-GD		1	1
No Yes	Riemerella anatipestifer ATCC 11845 = DSM 15868		1	1
No Yes	Desulfitobacterium hafniense DCB-2		1	1
No Yes	Clostridium difficile BI1		5	4
No Yes	Clostridium difficile R20291		5	4
No Yes	Clostridium difficile CD196		5	4
No Yes	Clostridium sp. SY8519		1	1
No Yes	Clostridium thermocellum DSM 1313		1	1
No Yes	Clostridium perfringens SM101		3	3
No Yes	Clostridium perfringens str. 13		6	4
No Yes	Clostridium botulinum A2 str. Kyoto		1	1
No Yes	Thermoanaerobacter sp. X513		2	1
No Yes	Leuconostoc mesenteroides subsp. mesenteroides J18		1	1
No Yes	Paenibacillus mucilaginosus KNP414		3	3
No Yes	Paenibacillus mucilaginosus K02		3	3
No Yes	Listeria monocytogenes 07PF0776		2	1
No Yes	Listeria monocytogenes M7		2	1
No Yes	Listeria monocytogenes 08-5578		2	1
No Yes	Listeria monocytogenes 08-5923		2	1
No Yes	Listeria monocytogenes L99		2	1
No Yes	Listeria monocytogenes HCC23		2	1
No Yes	Listeria monocytogenes 10403S		2	1
No Yes	Listeria monocytogenes J0161		2	1
No Yes	Listeria monocytogenes Finland 1998		2	1
No Yes	Listeria monocytogenes FSL R2-561		2	1
No Yes	Listeria monocytogenes serotype 4b str. F2365		2	1
No Yes	Listeria monocytogenes EGD-e		2	1
No Yes	Geobacillus sp. C56-T3		1	1
No Yes	Geobacillus sp. Y4.1MC1		2	2
No Yes	Geobacillus sp. Y412MC52		1	1
No Yes	Geobacillus sp. Y412MC61		1	1
No Yes	Bacillus subtilis BSn5		1	1
No Yes	Bacillus cereus subsp. cytotoxis NVH 391-98		2	2
No Yes	Bacillus thuringiensis serovar konkukian str. 97-27		3	2
No Yes	Bacillus thuringiensis BMB171		2	2
No Yes	Bacillus thuringiensis serovar finitimus YBT-020		3	2
No Yes	Bacillus cereus biovar anthracis str. CI		3	2
No Yes	Bacillus cereus AH820		4	3
No Yes	Bacillus cereus AH187		3	2
No Yes	Bacillus cereus B4264		4	3
No Yes	Bacillus cereus G9842		1	1
No Yes	Bacillus cereus Q1		3	2
No Yes	Bacillus cereus F837/76		2	2
No Yes	Bacillus cereus NC7401		3	2
No Yes	Bacillus cereus E33L		3	2
No Yes	Bacillus cereus ATCC 14579		2	1
No Yes	Bacillus cereus ATCC 10987		4	3
No Yes	Bacillus anthracis str. H9401		2	2
No Yes	Bacillus anthracis str. CDC 684		2	2
No Yes	Bacillus anthracis str. 'Ames Ancestor'		2	2
No Yes	Bacillus anthracis str. Sterne		2	2
No Yes	Bacillus anthracis str. Ames		2	2
No Yes	Bacillus megaterium WSH-002		3	2
No Yes	Bacillus megaterium QM B1551		5	2
No Yes	Rhodospirillum rubrum ATCC 11170		2	1
No Yes	Sinorhizobium meliloti SM11		1	1
No Yes	Sinorhizobium meliloti BL225C		1	1
No Yes	Sinorhizobium meliloti 1021		1	1
No Yes	Oligotropha carboxidovorans OM5		1	1
No Yes	Oligotropha carboxidovorans OM5		1	1
No Yes	Rhodopseudomonas palustris DX-1		1	1
No Yes	Rhodopseudomonas palustris TIE-1		1	1
No Yes	Rhodopseudomonas palustris HaA2		1	1
No Yes	Rhodopseudomonas palustris BisB5		1	1
No Yes	Rhodopseudomonas palustris BisB18		1	1
No Yes	Rhodopseudomonas palustris CGA009		1	1
No Yes	Bradyrhizobium sp. S23321		1	1
No Yes	Bradyrhizobium japonicum USDA 6		1	1
No Yes	Stenotrophomonas maltophilia D457		3	2
No Yes	Stenotrophomonas maltophilia JV3		3	2
No Yes	Stenotrophomonas maltophilia R551-3		4	2
No Yes	Xanthomonas campestris pv. vesicatoria str. 85-10		1	1
No Yes	Xanthomonas axonopodis pv. citrumelo F1		1	1
No Yes	Xanthomonas oryzae pv. oryzicola BLS256		1	1
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		1	1
No Yes	Xanthomonas oryzae pv. oryzae KACC 10331		1	1
No Yes	Xanthomonas campestris pv. raphani 756C		2	1
No Yes	Xanthomonas campestris pv. campestris str. 8004		2	1
No Yes	Xanthomonas campestris pv. campestris str. ATCC 33913		2	1
No Yes	Pantoea ananatis PA13		2	1
No Yes	Pseudomonas putida GB-1		2	1
No Yes	Pseudomonas mendocina NK-01		2	1
No Yes	Synechococcus sp. JA-2-3B'a(2-13)		1	1
No Yes	Homo sapiens (NCBI version)	Human	565	427
No Yes	Mus musculus 63_37 (longest transcript per gene)	House mouse	281	209
No Yes	Loa loa v3.3	Eye worm	74	59
No Yes	Wuchereria bancrofti v1.0	Agent of lymphatic filariasis	66	56
No Yes	Brugia malayi v1.0	Agent of lymphatic filariasis	62	49
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		23	18
No Yes	Lotus japonicus (Early assembly)		5	5
No Yes	Malus x domestica	Apple	3	3
No Yes	Ricinus communis (Early assembly)	Castor bean	4	4
No Yes	Solanum lycopersicum v2.3 (Early assembly)	Tomato	5	5
No Yes	Phoenix dactylifera (Early draft)	Date palm	6	6
No Yes	Homo sapiens 69_37	Human	319	238
No Yes	Pan troglodytes 69_2.1.4	Chimpanzee	242	189
No Yes	Gorilla gorilla 69_3.1	Western gorilla	263	199
No Yes	Pongo abelii 69_2	Sumatran orangutan	264	198
No Yes	Nomascus leucogenys 69_1.0	Northern white-cheeked gibbon	258	196
No Yes	Macaca mulatta 69_1	Rhesus monkey	264	199
No Yes	Callithrix jacchus 69_3.2.1	White-tufted-ear marmoset	288	217
No Yes	Otolemur garnettii 69_3	Small-eared galago	273	204
No Yes	Microcebus murinus 69_1	Gray mouse lemur	215	159
No Yes	Tarsius syrichta 69_1	Philippine tarsier	140	113
No Yes	Rattus norvegicus 69_3.4	Norway rat	265	205
No Yes	Mus musculus 69_38	House mouse	287	215
No Yes	Ictidomys tridecemlineatus 69_2	Thirteen-lined ground squirrel	246	184
No Yes	Dipodomys ordii 69_1	Ord's kangaroo rat	229	170
No Yes	Cavia porcellus 69_3	Domestic guinea pig	278	206
No Yes	Oryctolagus cuniculus 69_2	Rabbit	251	187
No Yes	Ochotona princeps 69	American pika	216	164
No Yes	Tupaia belangeri 69	Northern tree shrew	181	142
No Yes	Sus scrofa 69_10.2	Pig	264	205
No Yes	Bos taurus 69_3.1	Cattle	266	199
No Yes	Vicugna pacos 69_1	Alpaca	126	96
No Yes	Tursiops truncatus 69_1	Bottlenosed dolphin	245	183
No Yes	Mustela putorius furo 69_1.0	Domestic ferret	265	198
No Yes	Ailuropoda melanoleuca 69_1	Giant panda	269	201
No Yes	Canis familiaris 69_3.1	Dog	280	207
No Yes	Felis catus 69	Domestic cat	194	149
No Yes	Equus caballus 69_2	Horse	267	197
No Yes	Myotis lucifugus 69_2.0	Little brown bat	249	184
No Yes	Pteropus vampyrus 69_1	Large flying fox	249	191
No Yes	Sorex araneus 69_1	European shrew	149	119
No Yes	Erinaceus europaeus 69	Western European hedgehog	178	137
No Yes	Procavia capensis 69_1	Cape rock hyrax	208	158
No Yes	Loxodonta africana 69_3	African savanna elephant	277	205
No Yes	Echinops telfairi 69	Small Madagascar hedgehog	201	155
No Yes	Dasypus novemcinctus 69_2	Nine-banded armadillo	166	126
No Yes	Choloepus hoffmanni 69_1	Hoffmann's two-fingered sloth	110	81
No Yes	Macropus eugenii 69_1.0	Tammar wallaby	209	158
No Yes	Sarcophilus harrisii 69_7.0	Tasmanian devil	241	178
No Yes	Monodelphis domestica 69_5	Gray short-tailed opossum	258	192
No Yes	Ornithorhynchus anatinus 69_5	Platypus	211	164
No Yes	Petromyzon marinus 69_7.0	Sea lamprey	103	85
No Yes	Latimeria chalumnae 69_1	Coelacanth	254	190
No Yes	Anolis carolinensis 69_2.0	Green anole	244	181
No Yes	Taeniopygia guttata 69_3.2.4	Zebra finch	221	164
No Yes	Meleagris gallopavo 69_2	Turkey	219	164
No Yes	Gallus gallus 69_2	Chicken	237	174
No Yes	Pelodiscus sinensis 69_1.0	Chinese soft-shelled turtle	239	179
No Yes	Xenopus tropicalis 69_4.2	Western clawed frog	265	195
No Yes	Danio rerio 69_9	Zebrafish	396	305
No Yes	Gadus morhua 69_1	Atlantic cod	318	242
No Yes	Gasterosteus aculeatus 69_1	Three-spined stickleback	354	268
No Yes	Oryzias latipes 69_1	Japanese medaka	314	247
No Yes	Xiphophorus maculatus 69_4.4.2	Southern platyfish	357	277
No Yes	Tetraodon nigroviridis 69_8	Spotted green pufferfish	354	275
No Yes	Takifugu rubripes 69_4	Torafugu	331	254
No Yes	Oreochromis niloticus 69_1.0	Nile tilapia	373	284
No Yes	Ciona savignyi 69_2.0	Pacific transparent sea squirt	92	75
No Yes	Ciona intestinalis 69	Vase tunicate	106	83
No Yes	Drosophila melanogaster 69_5	Fruit fly	88	69
No Yes	Caenorhabditis elegans 69_215	Nematode	81	61
No Yes	Saccharomyces cerevisiae 69_4	Baker's yeast	27	23
No Yes	4_050719Q (meta-genome)		1	1
No Yes	5_050719P (meta-genome)		1	1
No Yes	Air microbial communities Singapore indoor air filters 1 (meta-genome)		2	1
No Yes	Air microbial communities Singapore indoor air filters 2 (meta-genome)		4	3
No Yes	Atta cephalotes fungus garden (ACEF) (meta-genome)		5	5
No Yes	Combined (meta-genome)		8	7
No Yes	Cyphomyrmex longiscapus fungus garden (meta-genome)		3	3
No Yes	Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)		1	1
No Yes	Dump bottom (Dump bottom) (meta-genome)		7	7
No Yes	Dump top (Dump top) (meta-genome)		8	8
No Yes	Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)		1	1
No Yes	Freshwater propionate enrichment of Brocadia fulgida (meta-genome)		1	1
No Yes	Fungus garden combined (combined) (meta-genome)		1	1
No Yes	Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)		4	4
No Yes	Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)		5	5
No Yes	Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)		1	1
No Yes	Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)		1	1
No Yes	Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)		17	17
No Yes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)		2	2
No Yes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)		5	5
No Yes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)		1	1
No Yes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)		1	1
No Yes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)		2	2
No Yes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)		6	5
No Yes	Human Gut Community Subject 7 (meta-genome)		3	3
No Yes	Human Gut Community Subject 8 (meta-genome)		2	2
No Yes	Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)		4	4
No Yes	Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)		3	3
No Yes	Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)		5	5
No Yes	Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)		3	3
No Yes	Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)		1	1
No Yes	Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)		1	1
No Yes	Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)		3	2
No Yes	Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)		1	1
No Yes	Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)		3	3
No Yes	Protozoadb 2010_08 (Protozoadb)		285	207
No Yes	simHC - Simulated High Complexity Metagenome (meta-genome)		5	4
No Yes	simLC - Simulated Low Complexity Metagenome (meta-genome)		4	3
No Yes	simMC - Simulated Medium Complexity Metagenome (meta-genome)		1	1
No Yes	Sludge/US, Phrap Assembly (meta-genome)		1	1
No Yes	Soil microbial communities from Minnesota Farm (meta-genome)		1	1
No Yes	Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)		14	14
No Yes	Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)		11	11
No Yes	Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)		5	5
No Yes	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)		8	7
No Yes	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)		6	6
No Yes	Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)		1	1
No Yes	STRING v9.0 (STRING)		10721	8234
No Yes	Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)		4	4
No Yes	Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)		1	1
No Yes	Termite Protist Endosymbiont Community (meta-genome)		1	1
No Yes	Uniprot 2013_05 (Uniprot)		33378	25865
No Yes	Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)		3	3
No Yes	Global Ocean Sampling Expedition (GOS)		114	101
No Yes	NCBI plasmid sequences (Plasmids)		10	8
No Yes	NCBI viral sequences (Viral)		3	3
No Yes	PDB chains (SCOP 1.75) (PDB)		127	122
No Yes	Protein Data Bank (all PDB sequenc)		647	634
No Yes	TargetDB (Targets)		513	422
No Yes	UniProt viral sequences (Viral)		30	30