SH3-domain superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		43202	43202
No Yes	Homo sapiens 49_36k (all transcripts)	Human	751	556
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	469	353
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	192	153
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	333	248
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	477	366
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	605	473
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	165	126
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	203	153
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	130	105
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	445	347
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	633	490
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	171	133
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	218	162
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	281	211
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	151	116
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	201	154
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	173	135
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	203	154
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	337	254
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	121	92
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	233	176
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	342	262
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	182	140
No Yes	Equus caballus 49_2 (all transcripts)	Horse	326	244
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	181	138
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	240	185
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	142	115
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	174	135
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	199	152
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	146	112
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	192	150
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	139	100
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	203	155
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	572	435
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	310	241
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	236	180
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	218	166
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	235	176
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	299	230
No Yes	Xenopus laevis	African clawed frog	370	298
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	396	296
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	510	403
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	412	320
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	385	303
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	327	258
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	1174	920
No Yes	Branchiostoma floridae 1.0	Florida lancelet	297	224
No Yes	Ciona savignyi 49_2f (all transcripts)		206	179
No Yes	Ciona intestinalis 49_2i (all transcripts)		168	141
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	227	167
No Yes	Helobdella robusta		128	110
No Yes	Capitella sp. I		122	95
No Yes	Bombyx mori	Domestic silkworm	64	55
No Yes	Nasonia vitripennis	Jewel wasp	73	59
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	168	140
No Yes	Drosophila grimshawi 1.3		89	69
No Yes	Drosophila willistoni 1.3		81	62
No Yes	Drosophila pseudoobscura 2.3		82	62
No Yes	Drosophila persimilis 1.3		91	72
No Yes	Drosophila yakuba 1.3		78	63
No Yes	Drosophila simulans 1.3		70	53
No Yes	Drosophila sechellia 1.3		82	65
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	213	162
No Yes	Drosophila erecta 1.3		84	65
No Yes	Drosophila ananassae 1.3		79	61
No Yes	Drosophila virilis 1.2		81	63
No Yes	Drosophila mojavensis 1.3		83	64
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	92	71
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	82	63
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	87	64
No Yes	Tribolium castaneum 3.0	Red flour beetle	82	67
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	79	64
No Yes	Acyrthosiphon pisum	Pea aphid	77	59
No Yes	Daphnia pulex	Common water flea	88	66
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	82	62
No Yes	Lottia gigantea		101	77
No Yes	Pristionchus pacificus		57	49
No Yes	Meloidogyne incognita	Southern root-knot nematode	67	59
No Yes	Meloidogyne hapla		42	34
No Yes	Brugia malayi	Agent of lymphatic filariasis	38	29
No Yes	Caenorhabditis japonica		68	55
No Yes	Caenorhabditis brenneri		85	64
No Yes	Caenorhabditis remanei		90	68
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	132	109
No Yes	Caenorhabditis briggsae 2		78	58
No Yes	Schistosoma mansoni		65	55
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	114	87
No Yes	Hydra magnipapillata		91	64
No Yes	Trichoplax adhaerens		62	51
No Yes	Proterospongia sp. ATCC 50818		137	99
No Yes	Monosiga brevicollis		100	70
No Yes	Capsaspora owczarzaki ATCC 30864		111	86
No Yes	Malassezia globosa CBS 7966		17	14
No Yes	Ustilago maydis		30	23
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		40	29
No Yes	Melampsora laricis-populina		32	26
No Yes	Sporobolomyces roseus IAM 13481		22	18
No Yes	Serpula lacrymans var. lacrymans S7.9		20	17
No Yes	Coprinopsis cinerea okayama7 130		40	33
No Yes	Pleurotus ostreatus	Oyster mushroom	37	30
No Yes	Laccaria bicolor S238N-H82		46	38
No Yes	Agaricus bisporus var. bisporus		37	31
No Yes	Schizophyllum commune		33	26
No Yes	Heterobasidion annosum		30	23
No Yes	Phanerochaete chrysosporium RP-78 2.1		28	21
No Yes	Postia placenta		52	41
No Yes	Tremella mesenterica		29	23
No Yes	Cryptococcus neoformans JEC21		27	20
No Yes	Magnaporthe grisea 70-15		30	25
No Yes	Podospora anserina		29	24
No Yes	Sporotrichum thermophile ATCC 42464		29	24
No Yes	Thielavia terrestris NRRL 8126		30	25
No Yes	Chaetomium globosum CBS 148.51		28	24
No Yes	Neurospora tetrasperma		30	25
No Yes	Neurospora discreta FGSC 8579		27	22
No Yes	Neurospora crassa OR74A		28	23
No Yes	Cryphonectria parasitica	Chestnut blight fungus	31	26
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		24	21
No Yes	Nectria haematococca mpVI		27	22
No Yes	Fusarium verticillioides 7600		27	22
No Yes	Fusarium graminearum		29	24
No Yes	Trichoderma atroviride		28	23
No Yes	Trichoderma reesei 1.2		29	24
No Yes	Trichoderma virens Gv29-8		29	24
No Yes	Verticillium dahliae VdLs.17		28	23
No Yes	Verticillium albo-atrum VaMs.102		27	23
No Yes	Botrytis cinerea B05.10		28	23
No Yes	Sclerotinia sclerotiorum		28	23
No Yes	Alternaria brassicicola		25	21
No Yes	Pyrenophora tritici-repentis		29	24
No Yes	Cochliobolus heterostrophus		28	23
No Yes	Stagonospora nodorum		29	24
No Yes	Mycosphaerella fijiensis CIRAD86		25	20
No Yes	Mycosphaerella graminicola IPO323		29	24
No Yes	Ajellomyces dermatitidis SLH14081		29	24
No Yes	Histoplasma capsulatum class NAmI strain WU24		25	20
No Yes	Microsporum gypseum		27	22
No Yes	Arthroderma benhamiae CBS 112371		29	24
No Yes	Microsporum canis CBS 113480		29	24
No Yes	Trichophyton equinum CBS 127.97		27	23
No Yes	Trichophyton verrucosum HKI 0517		28	24
No Yes	Trichophyton tonsurans CBS 112818		29	24
No Yes	Trichophyton rubrum CBS 118892		29	24
No Yes	Paracoccidioides brasiliensis Pb18		28	23
No Yes	Coccidioides posadasii RMSCC 3488		28	23
No Yes	Coccidioides immitis RS		28	23
No Yes	Uncinocarpus reesii 1704		28	23
No Yes	Aspergillus fumigatus Af293		29	24
No Yes	Neosartorya fischeri NRRL 181		28	23
No Yes	Penicillium chrysogenum Wisconsin 54-1255		29	24
No Yes	Penicillium marneffei ATCC 18224		32	27
No Yes	Aspergillus carbonarius ITEM 5010		30	25
No Yes	Aspergillus terreus NIH2624		26	22
No Yes	Aspergillus oryzae RIB40		27	22
No Yes	Aspergillus niger ATCC 1015		19	18
No Yes	Aspergillus flavus NRRL3357		29	24
No Yes	Aspergillus clavatus NRRL 1		30	25
No Yes	Aspergillus nidulans FGSC A4		29	25
No Yes	Tuber melanosporum Vittad	Perigord truffle	27	22
No Yes	Candida dubliniensis CD36		30	24
No Yes	Candida tropicalis MYA-3404		28	23
No Yes	Candida parapsilosis		25	23
No Yes	Candida albicans SC5314		29	24
No Yes	Yarrowia lipolytica CLIB122		26	21
No Yes	Candida lusitaniae ATCC 42720		25	22
No Yes	Vanderwaltozyma polyspora DSM 70294		29	25
No Yes	Candida glabrata CBS138		29	25
No Yes	Kluyveromyces thermotolerans CBS 6340		25	21
No Yes	Lachancea kluyveri		25	21
No Yes	Kluyveromyces waltii		25	21
No Yes	Lodderomyces elongisporus NRRL YB-4239		25	24
No Yes	Ashbya gossypii ATCC 10895		25	21
No Yes	Debaromyces hansenii		26	21
No Yes	Zygosaccharomyces rouxii		25	22
No Yes	Saccharomyces mikatae MIT		27	23
No Yes	Saccharomyces paradoxus MIT		28	24
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	28	24
No Yes	Saccharomyces bayanus MIT		26	22
No Yes	Candida guilliermondii ATCC 6260		28	24
No Yes	Pichia stipitis CBS 6054		26	21
No Yes	Pichia pastoris GS115		26	21
No Yes	Kluyveromyces lactis		24	21
No Yes	Schizosaccharomyces octosporus yFS286		26	21
No Yes	Schizosaccharomyces japonicus yFS275		25	20
No Yes	Schizosaccharomyces pombe	Fission yeast	26	21
No Yes	Allomyces macrogynus ATCC 38327		137	117
No Yes	Rhizopus oryzae RA 99-880		67	56
No Yes	Phycomyces blakesleeanus		64	52
No Yes	Mucor circinelloides		71	57
No Yes	Spizellomyces punctatus DAOM BR117		83	73
No Yes	Batrachochytrium dendrobatidis JEL423		56	46
No Yes	Dictyostelium discoideum		35	30
No Yes	Dictyostelium purpureum		29	26
No Yes	Entamoeba dispar		45	31
No Yes	Entamoeba invadens		45	29
No Yes	Entamoeba histolytica 1		48	36
No Yes	Arabidopsis lyrata	Lyrate rockcress	5	5
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	5	5
No Yes	Carica papaya	Papaya	3	3
No Yes	Medicago truncatula	Barrel medic	4	4
No Yes	Glycine max	Soybean	10	10
No Yes	Cucumis sativus	Cucumber	4	4
No Yes	Populus trichocarpa 1.1	Black cottonwood	10	10
No Yes	Vitis vinifera	Wine grape	5	5
No Yes	Brachypodium distachyon		5	5
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	6	6
No Yes	Zea mays subsp. mays	Maize	14	14
No Yes	Sorghum bicolor	Sorghum	5	5
No Yes	Selaginella moellendorffii		6	6
No Yes	Physcomitrella patens subsp. patens		8	8
No Yes	Coccomyxa sp. C-169		2	1
No Yes	Chlorella sp. NC64A		2	1
No Yes	Chlorella vulgaris		2	1
No Yes	Volvox carteri f. nagariensis		2	1
No Yes	Trypanosoma cruzi strain CL Brener		14	10
No Yes	Trypanosoma brucei		4	4
No Yes	Leishmania mexicana		7	5
No Yes	Leishmania major strain Friedlin		7	5
No Yes	Leishmania infantum JPCM5		6	4
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		7	5
No Yes	Aureococcus anophagefferens		16	15
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	3	3
No Yes	Phytophthora sojae 1.1		4	3
No Yes	Phytophthora infestans T30-4		5	4
No Yes	Phytophthora capsici		3	3
No Yes	Fragilariopsis cylindrus		1	1
No Yes	Thalassiosira pseudonana		2	2
No Yes	Paramecium tetraurelia		5	5
No Yes	Tetrahymena thermophila SB210 1		5	5
No Yes	Neospora caninum Nc-Liverpool		1	1
No Yes	Neospora caninum		1	1
No Yes	Toxoplasma gondii ME49		1	1
No Yes	Naegleria gruberi		15	13
No Yes	Trichomonas vaginalis		26	23
No Yes	Emiliania huxleyi CCMP1516		11	10
No Yes	Kytococcus sedentarius DSM 20547		1	1
No Yes	Bacteroides thetaiotaomicron VPI-5482		1	1
No Yes	Flavobacteriaceae bacterium 3519-10		1	1
No Yes	Methylacidiphilum infernorum V4		1	1
No Yes	Sebaldella termitidis ATCC 33386		1	1
No Yes	Anaerococcus prevotii DSM 20548		1	1
No Yes	Pelotomaculum thermopropionicum SI		1	1
No Yes	Desulfitobacterium hafniense Y51		1	1
No Yes	Ammonifex degensii KC4		1	1
No Yes	Thermoanaerobacter tengcongensis MB4		1	1
No Yes	Oenococcus oeni PSU-1		1	1
No Yes	Brevibacillus brevis NBRC 100599		1	1
No Yes	Listeria welshimeri ser. 6b SLCC5334		2	1
No Yes	Listeria innocua Clip11262		2	1
No Yes	Listeria seeligeri ser. 1/2b SLCC3954		2	1
No Yes	Listeria monocytogenes EGD-e		2	1
No Yes	Bacillus halodurans C-125		1	1
No Yes	Bacillus cereus ATCC 14579		2	1
No Yes	Bacillus clausii KSM-K16		9	2
No Yes	Magnetococcus sp. MC-1		1	1
No Yes	Rhodospirillum rubrum ATCC 11170		2	1
No Yes	Sinorhizobium medicae WSM419		2	1
No Yes	Sinorhizobium meliloti 1021		1	1
No Yes	Rhodopseudomonas palustris CGA009		1	1
No Yes	Haemophilus parasuis SH0165		1	1
No Yes	Stenotrophomonas maltophilia R551-3		2	1
No Yes	Xanthomonas axonopodis pv. citri 306		1	1
No Yes	Xanthomonas oryzae pv. oryzae KACC10331		1	1
No Yes	Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)		1	1
No Yes	Pseudomonas entomophila L48		2	1
No Yes	Methanococcus vannielii SB		1	1
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	240	179
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	113	90
No Yes	Cryptococcus neoformans var. grubii H99		28	22
No Yes	Cryptococcus neoformans B-3501A		31	24
No Yes	Ajellomyces dermatitidis ER-3		29	24
No Yes	Histoplasma capsulatum H143		26	21
No Yes	Histoplasma capsulatum H88		28	23
No Yes	Histoplasma capsulatum G186AR		29	24
No Yes	Paracoccidioides brasiliensis Pb01		26	21
No Yes	Paracoccidioides brasiliensis Pb03		28	23
No Yes	Coccidioides posadasii str. Silveira		23	19
No Yes	Coccidioides immitis RMSCC 3703		29	24
No Yes	Coccidioides immitis RMSCC 2394		27	22
No Yes	Coccidioides immitis H538.4		24	20
No Yes	Aspergillus fumigatus A1163		29	24
No Yes	Candida albicans WO-1		26	21
No Yes	Saccharomyces cerevisiae YJM789		27	23
No Yes	Saccharomyces cerevisiae RM11-1a		28	24
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	27	23
No Yes	Schizosaccharomyces pombe 972h-		26	21
No Yes	Batrachochytrium dendrobatidis JAM81		55	46
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	6	6
No Yes	Clostridium difficile R20291		1	1
No Yes	Clostridium difficile CD196		1	1
No Yes	Listeria monocytogenes 08-5578		2	1
No Yes	Listeria monocytogenes 08-5923		2	1
No Yes	Listeria monocytogenes Clip80459		2	1
No Yes	Listeria monocytogenes HCC23		2	1
No Yes	Listeria monocytogenes 4b F2365		2	1
No Yes	Bacillus cereus AH187		2	1
No Yes	Bacillus cereus B4264		2	1
No Yes	Bacillus cereus Q1		2	1
No Yes	Bacillus cereus E33L		2	1
No Yes	Bacillus cereus ATCC 10987		2	1
No Yes	Rhodopseudomonas palustris TIE-1		1	1
No Yes	Rhodopseudomonas palustris BisB5		1	1
No Yes	Stenotrophomonas maltophilia K279a		2	1
No Yes	Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)		1	1
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		1	1
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		1	1
No Yes	Xanthomonas campestris pv. campestris B100		1	1
No Yes	Xanthomonas campestris pv. campestris 8004 (Completed 2005)		1	1
No Yes	Pseudomonas putida GB-1		2	1
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	262	198
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		23	18
No Yes	Lotus japonicus (Early assembly)		2	2
No Yes	Prunus persica (Early draft)	Peach	4	4
No Yes	Manihot esculenta (Early draft)	Cassava	7	7
No Yes	Ricinus communis (Early assembly)	Castor bean	4	4
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	6	6
No Yes	Phoenix dactylifera (Early draft)	Date palm	5	5
No Yes	Trypanosoma vivax (Parial)		3	3
No Yes	Trypanosoma congolense (Partial)		4	4
No Yes	Toxoplasma gondii RH (Archived)		1	1
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	277	207
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	256	192
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	192	153
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	258	195
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	250	191
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	263	200
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	165	126
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	203	153
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	130	105
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	238	185
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	267	202
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	171	133
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	218	162
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	269	203
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	151	116
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	201	154
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	173	135
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	194	146
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	248	188
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	121	92
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	233	176
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	258	192
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	182	140
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	253	194
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	181	138
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	240	185
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	142	115
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	174	135
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	199	152
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	146	112
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	192	150
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	139	100
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	202	154
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	244	186
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	182	139
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	228	173
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	214	162
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	214	160
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	222	165
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	212	161
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	290	226
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	333	256
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	301	237
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	327	258
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	312	243
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		79	65
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		85	69
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	69	56
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	240	179
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	83	64
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	90	69
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	74	55
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	74	55
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	74	55
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	5	5
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	6	6
No Yes	NCBI viral sequences (Viral)		3	3
No Yes	PDB chains (SCOP 1.73) (PDB)		121	117
No Yes	TargetDB (Targets)		384	319
No Yes	UniProt 15.0 (UniProt)		7856	6202
No Yes	UniProt 15.0 viral sequences (Viral)		27	27