SUPERFAMILY 1.75 HMM library and genome assignments server

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Acid proteases superfamily domain assignments
in
Thermococcus barophilus MP


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Select to display   Genome       Domains   Proteins
No Yes ALL   580295 580295
No Yes Homo sapiens 76_38 Human 47 47
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 16 16
No Yes Gorilla gorilla 76_3.1 Western gorilla 23 23
No Yes Pongo abelii 76_2 Sumatran orangutan 14 14
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 16 16
No Yes Papio anubis 76 Olive baboon 15 15
No Yes Macaca mulatta 76_1 Rhesus monkey 30 30
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 30 28
No Yes Otolemur garnettii 76_3 Small-eared galago 31 31
No Yes Microcebus murinus 76_1 Gray mouse lemur 12 11
No Yes Rattus norvegicus 76_5.0 Norway rat 16 16
No Yes Mus musculus 76_38 House mouse 29 29
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 9 9
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 19 19
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 11 11
No Yes Cavia porcellus 76_3 Domestic guinea pig 13 13
No Yes Oryctolagus cuniculus 76_2 Rabbit 29 28
No Yes Ochotona princeps 76 American pika 29 25
No Yes Tupaia belangeri 76 Northern tree shrew 16 11
No Yes Sus scrofa 76_10.2 Pig 29 29
No Yes Bos taurus 76_3.1 Cattle 77 77
No Yes Ovis aries 76_3.1 Sheep 95 95
No Yes Vicugna pacos 76_1 Alpaca 10 9
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 12 11
No Yes Mustela putorius furo 76_1.0 Domestic ferret 18 18
No Yes Ailuropoda melanoleuca 76_1 Giant panda 17 17
No Yes Canis familiaris 76_3.1 Dog 26 26
No Yes Felis catus 76_6.2 Domestic cat 45 44
No Yes Equus caballus 76_2 Horse 25 25
No Yes Myotis lucifugus 76_2.0 Little brown bat 21 21
No Yes Pteropus vampyrus 76_1 Large flying fox 13 12
No Yes Sorex araneus 76_1 European shrew 10 8
No Yes Erinaceus europaeus 76 Western European hedgehog 15 14
No Yes Procavia capensis 76_1 Cape rock hyrax 13 11
No Yes Loxodonta africana 76_3 African savanna elephant 19 19
No Yes Echinops telfairi 76 Small Madagascar hedgehog 13 12
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 23 23
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 7 5
No Yes Macropus eugenii 76_1.0 Tammar wallaby 13 13
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 42 42
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 93 93
No Yes Ornithorhynchus anatinus 76_5 Platypus 12 11
No Yes Saccoglossus kowalevskii v3.0   22 22
No Yes Petromyzon marinus 76_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 76_2 Turkey 16 16
No Yes Gallus gallus 76_4 Chicken 13 13
No Yes Anas platyrhynchos 76_1.0 Mallard 13 13
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 15 15
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 13 13
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 30 29
No Yes Anolis carolinensis 76_2.0 Green anole 37 37
No Yes Xenopus laevis African clawed frog 44 44
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 33 33
No Yes Latimeria chalumnae 76_1 Coelacanth 60 60
No Yes Lepisosteus oculatus 76 Spotted gar 19 19
No Yes Gadus morhua 76_1 Atlantic cod 12 12
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 10 10
No Yes Takifugu rubripes 76_4 Torafugu 32 32
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 16 16
No Yes Oryzias latipes 76_1 Japanese medaka 18 18
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 8 8
No Yes Poecilia formosa 76 Amazon molly 8 8
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 15 15
No Yes Astyanax mexicanus 76 Mexican tetra 20 19
No Yes Danio rerio 76_9 Zebrafish 14 14
No Yes Oikopleura dioica   9 9
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 6 6
No Yes Ciona intestinalis 76 Vase tunicate 4 4
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 70 68
No Yes Adineta vaga   18 18
No Yes Octopus bimaculoides 280   21 21
No Yes Crassostrea gigas 22 Pacific oyster 8 7
No Yes Lottia gigantea Owl limpet 24 24
No Yes Helobdella robusta   35 35
No Yes Capitella sp. I   18 18
No Yes Danaus plexippus OGS1.0 Monarch butterfly 6 6
No Yes Heliconius melpomene Postman butterfly 8 8
No Yes Bombyx mori Domestic silkworm 39 38
No Yes Nasonia vitripennis Jewel wasp 46 45
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 5 5
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 22 22
No Yes Linepithema humile v1.1 Argentine ant 18 18
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 8 8
No Yes Solenopsis invicta v.2.2.3 Red fire ant 20 20
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 18 15
No Yes Atta cephalotes v1.1   14 13
No Yes Camponotus floridanus v3.3 Florida carpenter ant 89 87
No Yes Lucilia cuprina Australian sheep blowfly 12 12
No Yes Drosophila grimshawi 1.3   13 13
No Yes Drosophila willistoni 1.3   22 22
No Yes Drosophila pseudoobscura 2.13   30 29
No Yes Drosophila persimilis 1.3   15 15
No Yes Drosophila suzukii   13 10
No Yes Drosophila yakuba 1.3   17 17
No Yes Drosophila simulans 1.3   16 15
No Yes Drosophila sechellia 1.3   28 28
No Yes Drosophila melanogaster 76_5 Fruit fly 14 14
No Yes Drosophila erecta 1.3   22 21
No Yes Drosophila ananassae 1.3   20 20
No Yes Drosophila virilis 1.2   9 9
No Yes Drosophila mojavensis 1.3   10 10
No Yes Megaselia scalaris 22   22 16
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 6 6
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 69 64
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 2
No Yes Acyrthosiphon pisum Pea aphid 22 22
No Yes Rhodnius prolixus 22   34 34
No Yes Daphnia pulex Common water flea 56 52
No Yes Strigamia maritima 22   40 40
No Yes Sarcoptes scabiei   7 7
No Yes Tetranychus urticae Two-spotted spider mite 3 3
No Yes Ixodes scapularis (Preliminary) Black-legged tick 10 10
No Yes Pristionchus pacificus   60 58
No Yes Meloidogyne incognita Southern root-knot nematode 64 59
No Yes Meloidogyne hapla   45 45
No Yes Onchocerca volvulus 22   6 6
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 11 11
No Yes Caenorhabditis japonica   153 149
No Yes Caenorhabditis brenneri   82 80
No Yes Caenorhabditis remanei   167 161
No Yes Caenorhabditis elegans 76_235 Roundworm 35 34
No Yes Caenorhabditis briggsae 2   40 38
No Yes Trichinella spiralis 22   43 43
No Yes Hymenolepis microstoma   21 19
No Yes Echinococcus multilocularis   4 4
No Yes Echinococcus granulosus   3 3
No Yes Taenia solium Pork tapeworm 20 20
No Yes Schistosoma mansoni   17 17
No Yes Mnemiopsis leidyi Sea walnut 30 30
No Yes Thelohanellus kitauei   182 182
No Yes Acropora digitifera v1.0   51 51
No Yes Nematostella vectensis 1.0 Starlet sea anemone 17 17
No Yes Hydra vulgaris   36 36
No Yes Amphimedon queenslandica   72 72
No Yes Trichoplax adhaerens   13 13
No Yes Proterospongia sp. ATCC 50818   4 3
No Yes Monosiga brevicollis   5 4
No Yes Sphaeroforma arctica JP610   8 8
No Yes Capsaspora owczarzaki ATCC 30864   6 6
No Yes Conidiobolus coronatus NRRL28638 v1.0   4 4
No Yes Mortierella verticillata NRRL 6337   33 33
No Yes Phycomyces blakesleeanus   42 42
No Yes Rhizopus oryzae RA 99-880   205 203
No Yes Mucor circinelloides   28 28
No Yes Rhizomucor miehei CAU432   30 29
No Yes Malassezia globosa CBS 7966   38 38
No Yes Sporisorium reilianum 22   10 10
No Yes Ustilago maydis   11 11
No Yes Mixia osmundae IAM 14324 v1.0   54 50
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   35 35
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   154 154
No Yes Melampsora laricis-populina   35 34
No Yes Rhodotorula graminis WP1 v1.0   11 11
No Yes Sporobolomyces roseus IAM 13481   15 15
No Yes Microbotryum violaceum 22   21 21
No Yes Wallemia sebi v1.0   2 2
No Yes Sphaerobolus stellatus v1.0   194 194
No Yes Piloderma croceum F 1598 v1.0   56 56
No Yes Serpula lacrymans var. lacrymans S7.9   57 57
No Yes Coniophora puteana   55 55
No Yes Hydnomerulius pinastri v2.0   43 43
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   33 33
No Yes Pisolithus microcarpus 441 v1.0   32 32
No Yes Pisolithus tinctorius Marx 270 v1.0   67 67
No Yes Scleroderma citrinum Foug A v1.0   61 61
No Yes Coprinopsis cinerea okayama7 130 v3   18 18
No Yes Pleurotus ostreatus Oyster mushroom 44 44
No Yes Amanita thiersii Skay4041 v1.0   20 20
No Yes Amanita muscaria Koide v1.0 Fly agaric 47 47
No Yes Galerina marginata v1.0   46 46
No Yes Hebeloma cylindrosporum h7 v2.0   22 22
No Yes Laccaria bicolor S238N-H82   58 58
No Yes Agaricus bisporus var. bisporus   37 37
No Yes Schizophyllum commune   42 42
No Yes Stereum hirsutum FP-91666 SS1 v1.0   42 42
No Yes Heterobasidion annosum   39 39
No Yes Gloeophyllum trabeumv1.0   57 57
No Yes Punctularia strigosozonata v1.0   70 67
No Yes Sebacina vermifera MAFF 305830 v1.0   19 19
No Yes Fomitiporia mediterranea v1.0   47 46
No Yes Tulasnella calospora AL13/4D v1.0   46 46
No Yes Postia placenta   121 118
No Yes Wolfiporia cocos MD-104 SS10 v1.0   41 41
No Yes Fomitopsis pinicolav1.0   66 66
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   59 59
No Yes Phanerochaete chrysosporium RP-78 2.1   145 145
No Yes Dichomitus squalens   59 59
No Yes Trametes versicolor v1.0   86 85
No Yes Tremella mesenterica Witches' butter 22 22
No Yes Daldinia eschscholzii EC12 v1.0   20 20
No Yes Apiospora montagnei NRRL 25634 v1.0   33 33
No Yes Magnaporthe poae ATCC 64411 22   28 28
No Yes Magnaporthe grisea 70-15   25 25
No Yes Podospora anserina   31 31
No Yes Sporotrichum thermophile ATCC 42464   18 18
No Yes Thielavia terrestris NRRL 8126   30 30
No Yes Chaetomium globosum CBS 148.51   24 24
No Yes Neurospora tetrasperma   18 18
No Yes Neurospora discreta FGSC 8579   20 20
No Yes Neurospora crassa OR74A   20 20
No Yes Cryphonectria parasitica Chestnut blight fungus 34 33
No Yes Verticillium albo-atrum VaMs.102   19 19
No Yes Verticillium dahliae VdLs.17   18 18
No Yes Acremonium alcalophilumv 1.0   9 9
No Yes Glomerella graminicola 22   18 18
No Yes Fusarium graminearum   21 21
No Yes Nectria haematococca mpVI   23 23
No Yes Fusarium oxysporum f. sp. lycopersici 4286   25 25
No Yes Fusarium verticillioides 7600   25 25
No Yes Trichoderma asperellum CBS 433.97 v1.0   22 22
No Yes Trichoderma atroviride   22 22
No Yes Trichoderma citrinoviride v1.0   20 20
No Yes Trichoderma reesei 1.2   18 18
No Yes Trichoderma virens Gv29-8   26 25
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   17 17
No Yes Trichoderma harzianum CBS 226.95 v1.0   27 26
No Yes Amorphotheca resinae v1.0 Creosote fungus 13 13
No Yes Botrytis cinerea B05.10   35 35
No Yes Sclerotinia sclerotiorum   23 23
No Yes Blumeria graminis 22   6 6
No Yes Didymella exigua CBS 183.55 v1.0   21 21
No Yes Leptosphaeria maculans 22   14 14
No Yes Setosphaeria turcica v1.0   20 20
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   23 23
No Yes Cochliobolus victoriae FI3 v1.0   22 22
No Yes Cochliobolus carbonum 26-R-13 v1.0   24 24
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 21 21
No Yes Alternaria brassicicola   15 15
No Yes Cochliobolus lunatus m118 v2.0   20 20
No Yes Pyrenophora teres f. teres 22   22 22
No Yes Pyrenophora tritici-repentis   18 18
No Yes Stagonospora nodorum   24 24
No Yes Mycosphaerella graminicola IPO323   27 27
No Yes Zasmidium cellare ATCC 36951 v1.0   32 32
No Yes Dothistroma septosporum   16 16
No Yes Septoria musiva v1.0   13 13
No Yes Mycosphaerella fijiensis CIRAD86   19 19
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   18 18
No Yes Paracoccidioides brasiliensis Pb18   6 6
No Yes Coccidioides posadasii RMSCC 3488   7 7
No Yes Coccidioides immitis RS   8 8
No Yes Ajellomyces dermatitidis SLH14081   7 7
No Yes Histoplasma capsulatum class NAmI strain WU24   6 6
No Yes Microsporum canis CBS 113480   10 10
No Yes Trichophyton equinum CBS 127.97   10 10
No Yes Trichophyton verrucosum HKI 0517   10 10
No Yes Arthroderma benhamiae CBS 112371   10 10
No Yes Trichophyton tonsurans CBS 112818   10 10
No Yes Trichophyton rubrum CBS 118892   10 10
No Yes Uncinocarpus reesii 1704   7 7
No Yes Aspergillus zonatus v1.0   12 11
No Yes Penicillium chrysogenum Wisconsin 54-1255   11 11
No Yes Penicillium chrysogenum v1.0   10 10
No Yes Aspergillus acidus v1.0   12 12
No Yes Aspergillus fumigatus Af293   9 9
No Yes Aspergillus brasiliensis v1.0   16 16
No Yes Aspergillus nidulans FGSC A4   11 11
No Yes Aspergillus sydowii v1.0   13 13
No Yes Aspergillus versicolor v1.0   13 13
No Yes Aspergillus glaucus   7 7
No Yes Aspergillus carbonarius ITEM 5010   17 17
No Yes Neosartorya fischeri NRRL 181   10 10
No Yes Aspergillus terreus NIH2624   12 11
No Yes Aspergillus tubingensis v1.0   12 12
No Yes Aspergillus wentii v1.0   18 18
No Yes Aspergillus oryzae RIB40   15 15
No Yes Aspergillus niger 22   15 15
No Yes Aspergillus niger ATCC 1015   8 8
No Yes Aspergillus flavus NRRL3357   17 17
No Yes Aspergillus clavatus NRRL 1   10 10
No Yes Penicillium marneffei ATCC 18224   38 38
No Yes Tuber melanosporum Mel28 22   5 5
No Yes Tuber melanosporum Vittad Perigord truffle 171 171
No Yes Hansenula polymorpha v2.0   5 5
No Yes Dekkera bruxellensis CBS 2499 v2.0   5 5
No Yes Pichia membranifaciensv1.0   10 8
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   13 13
No Yes Candida dubliniensis CD36   15 15
No Yes Candida tropicalis MYA-3404   16 16
No Yes Candida parapsilosis   23 23
No Yes Candida albicans SC5314   16 16
No Yes Lodderomyces elongisporus NRRL YB-4239   13 12
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   13 13
No Yes Pichia stipitis CBS 6054   9 9
No Yes Candida guilliermondii ATCC 6260   16 16
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   10 10
No Yes Debaromyces hansenii   9 9
No Yes Wickerhamomyces anomalus   12 12
No Yes Pichia pastoris GS115   9 9
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   9 9
No Yes Yarrowia lipolytica CLIB122   42 42
No Yes Candida lusitaniae ATCC 42720   19 19
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   9 9
No Yes Vanderwaltozyma polyspora DSM 70294   7 7
No Yes Candida glabrata CBS138   15 15
No Yes Kluyveromyces thermotolerans CBS 6340   5 5
No Yes Lachancea kluyveri   9 9
No Yes Kluyveromyces waltii   6 6
No Yes Ashbya gossypii ATCC 10895   8 8
No Yes Zygosaccharomyces rouxii   11 11
No Yes Saccharomyces mikatae MIT   17 17
No Yes Saccharomyces paradoxus MIT   13 12
No Yes Saccharomyces cerevisiae 76 Baker's yeast 12 12
No Yes Saccharomyces bayanus MIT   21 21
No Yes Kluyveromyces lactis   6 6
No Yes Schizosaccharomyces cryophilus OY26 22   5 5
No Yes Schizosaccharomyces octosporus yFS286   5 5
No Yes Schizosaccharomyces japonicus yFS275   9 9
No Yes Schizosaccharomyces pombe Fission yeast 13 13
No Yes Catenaria anguillulae PL171 v1.0   13 13
No Yes Allomyces macrogynus ATCC 38327   7 7
No Yes Spizellomyces punctatus DAOM BR117   11 11
No Yes Dictyostelium discoideum   24 24
No Yes Dictyostelium purpureum   11 11
No Yes Entamoeba dispar 1.2   1 1
No Yes Entamoeba invadens 1.2   1 1
No Yes Entamoeba histolytica 1   2 2
No Yes Selaginella moellendorffii   77 76
No Yes Pinus taeda Loblolly pine 239 211
No Yes Picea abies Norway spruce 122 116
No Yes Eucalyptus grandis v201 Rose gum 134 134
No Yes Theobroma cacao B97-61/B2 v1 Cacao 509 507
No Yes Gossypium raimondii v221   161 161
No Yes Citrus clementina v165   120 120
No Yes Citrus sinensis v154 Sweet orange 163 163
No Yes Thellungiella halophila v173   85 85
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 115 114
No Yes Capsella rubella v183   77 77
No Yes Arabidopsis lyrata Lyrate rockcress 82 81
No Yes Arabidopsis thaliana 10 Thale cress 83 82
No Yes Carica papaya Papaya 50 50
No Yes Medicago truncatula Barrel medic 149 148
No Yes Phaseolus vulgaris v186 French bean 94 94
No Yes Glycine max v109 Soybean 234 234
No Yes Cucumis sativus v122 Cucumber 116 116
No Yes Fragaria vesca Wild strawberry 111 108
No Yes Malus domestica v196 Apple 98 95
No Yes Prunus persica v139 Peach 115 115
No Yes Linum usitatissimum v200 Flax 161 156
No Yes Manihot esculenta v147 Cassava 106 106
No Yes Populus trichocarpa v156 Black cottonwood 112 112
No Yes Vitis vinifera Wine grape 60 58
No Yes Mimulus guttatus v140 Spotted monkey flower 146 144
No Yes Solanum lycopersicum v.2.3 Tomato 106 104
No Yes Solanum tuberosum Potato 163 161
No Yes Actinidia chinensis Hongyang   106 99
No Yes Aquilegia coerulea v195   101 101
No Yes Triticum urartu 22   119 114
No Yes Triticum aestivum 22 Bread wheat 214 214
No Yes Aegilops tauschii 22   162 154
No Yes Brachypodium distachyon Stiff brome 98 97
No Yes Oryza barthii 22 African wild rice 147 120
No Yes Oryza meridionalis 22   128 117
No Yes Oryza glumaepatula 22   139 128
No Yes Oryza glaberrima African rice 113 113
No Yes Oryza punctata 22   138 124
No Yes Oryza nivara 22   164 142
No Yes Oryza brachyantha 22 Malo sina 104 103
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1476 1474
No Yes Oryza sativa v193 Rice 1476 1474
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 124 118
No Yes Panicum virgatum v202 Switchgrass 250 250
No Yes Setaria italica v164 Foxtail millet 133 133
No Yes Zea mays subsp. mays Maize 137 137
No Yes Zea mays v181 Maize 157 156
No Yes Sorghum bicolor Sorghum 153 136
No Yes Musa balbisiana Balbis banana 305 303
No Yes Musa acuminata 22 Wild Malaysian banana 83 81
No Yes Amborella trichopoda 22   93 89
No Yes Physcomitrella patens   71 71
No Yes Coccomyxa subellipsoidea sp. C-169 v2   10 10
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella variabilis sp. NC64A   4 4
No Yes Chlorella vulgaris   9 9
No Yes Volvox carteri f. nagariensis   20 20
No Yes Volvox carteri v199   6 6
No Yes Chlamydomonas reinhardtii 4.0   8 7
No Yes Ostreococcus sp. RCC809   6 6
No Yes Ostreococcus lucimarinus CCE9901   7 7
No Yes Ostreococcus tauri   6 6
No Yes Bathycoccus prasinos   6 6
No Yes Micromonas sp. RCC299   5 5
No Yes Micromonas pusilla CCMP1545 v3.0   5 5
No Yes Cyanidioschyzon merolae strain 10D 22   4 4
No Yes Cyanidioschyzon merolae   4 4
No Yes Porphyridium purpureum 02_2012   21 21
No Yes Thecamonas trahens ATCC 50062   13 12
No Yes Bigelowiella natans CCMP2755 22   29 28
No Yes Giardia lamblia 2.3   3 3
No Yes Cyanophora paradoxa   22 22
No Yes Leishmania mexicana 2.4   1 1
No Yes Leishmania major strain Friedlin   1 1
No Yes Leishmania infantum JPCM5 2.4   1 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Trypanosoma congolense 2.4   4 4
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Ectocarpus siliculosus   12 12
No Yes Aureococcus anophagefferens   7 7
No Yes Albugo laibachii 22   39 39
No Yes Pythium iwayamai DAOM BR242034 22   27 26
No Yes Pythium arrhenomanes ATCC 12531 22   40 37
No Yes Pythium ultimum v1.7-2   35 35
No Yes Pythium aphanidermatum DAOM BR444 22   33 33
No Yes Pythium irregulare DAOM BR486 22   27 23
No Yes Pythium vexans DAOM BR484 22   18 18
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 36 35
No Yes Phytophthora sojae 1.1   147 146
No Yes Phytophthora infestans T30-4   114 114
No Yes Phytophthora capsici   78 78
No Yes Hyaloperonospora arabidopsidis 22   10 10
No Yes Phaeodactylum tricornutumCCAP 1055/1   7 7
No Yes Fragilariopsis cylindrus   17 17
No Yes Thalassiosira pseudonana CCMP1335   12 12
No Yes Perkinsus marinus ATCC 50983   160 160
No Yes Paramecium tetraurelia   58 57
No Yes Tetrahymena thermophila SB210 1   106 104
No Yes Ichthyophthirius multifiliis strain G5   17 17
No Yes Cryptosporidium hominis   6 6
No Yes Cryptosporidium muris   9 9
No Yes Cryptosporidium parvum Iowa II   6 6
No Yes Neospora caninum   8 8
No Yes Toxoplasma gondii VEG   8 8
No Yes Toxoplasma gondii ME49   8 8
No Yes Toxoplasma gondii GT1   8 8
No Yes Babesia bovis T2Bo   16 16
No Yes Theileria parva   9 9
No Yes Theileria annulata   9 9
No Yes Plasmodium falciparum 3D7   13 13
No Yes Plasmodium vivax SaI-1 7.0   11 10
No Yes Plasmodium knowlesi strain H   11 10
No Yes Plasmodium yoelii ssp. yoelii 1   15 15
No Yes Plasmodium chabaudi   10 10
No Yes Plasmodium berghei ANKA   10 10
No Yes Symbiodinium minutum clade B1 v1.2   102 96
No Yes Naegleria gruberi   5 5
No Yes Trichomonas vaginalis   2 2
No Yes Guillardia theta CCMP2712 v1.0   47 29
No Yes Emiliania huxleyi CCMP1516   14 14
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Pseudanabaena sp. PCC 7367   2 2
No Yes Acaryochloris marina MBIC11017   5 3
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Synechococcus sp. PCC 7502   2 2
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Microcoleus sp. PCC 7113   3 3
No Yes Trichodesmium erythraeum IMS101   4 3
No Yes Geitlerinema sp. PCC 7407   3 3
No Yes Cyanothece sp. PCC 8802   4 4
No Yes Gloeocapsa sp. PCC 7428   2 2
No Yes Halothece sp. PCC 7418   2 2
No Yes Microcystis aeruginosa NIES-843   3 3
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Rivularia sp. PCC 7116   4 4
No Yes Calothrix sp. PCC 7507   1 1
No Yes Anabaena variabilis ATCC 29413   3 3
No Yes 'Nostoc azollae' 0708   1 1
No Yes Nostoc sp. PCC 7107   5 5
No Yes Nostoc punctiforme PCC 73102   4 4
No Yes Nostoc sp. PCC 7120   4 4
No Yes Nostoc sp. PCC 7524   3 3
No Yes Anabaena sp. 90   3 3
No Yes Mycoplasma mobile 163K   1 1
No Yes Ilumatobacter coccineus   1 1
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Actinoplanes sp. SE50/110   2 1
No Yes Leifsonia xyli subsp. xyli str. CTCB07   1 1
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Micrococcus luteus NCTC 2665   1 1
No Yes Roseiflexus sp. RS-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Chloroflexus sp. MS-G   1 1
No Yes Chloroflexus sp. Y-400-fl   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Chloroflexus aurantiacus J-10-fl   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Natranaerobius thermophilus JW/NM-WN-LF   2 2
No Yes Symbiobacterium thermophilum IAM 14863   1 1
No Yes Desulfotomaculum reducens MI-1   1 1
No Yes Desulfotomaculum acetoxidans DSM 771   1 1
No Yes Desulfotomaculum kuznetsovii DSM 6115   1 1
No Yes Alkaliphilus metalliredigens QYMF   1 1
No Yes Clostridium beijerinckii NCIMB 8052   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446   1 1
No Yes Paenibacillus terrae HPL-003   2 2
No Yes Paenibacillus polymyxa M1   1 1
No Yes Geobacillus thermoleovorans CCB_US3_UF5   1 1
No Yes Geobacillus kaustophilus HTA426   1 1
No Yes Geobacillus sp. GHH01   1 1
No Yes Geobacillus sp. WCH70   2 2
No Yes Bacillus cellulosilyticus DSM 2522   1 1
No Yes Pelodictyon phaeoclathratiforme BU-1   1 1
No Yes Chlorobium chlorochromatii CaD3   1 1
No Yes Chlorobium phaeobacteroides DSM 266   1 1
No Yes Chlorobium phaeovibrioides DSM 265   1 1
No Yes Chloroherpeton thalassium ATCC 35110   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   5 4
No Yes Niastella koreensis GR20-10   4 2
No Yes Chitinophaga pinensis DSM 2588   5 5
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Belliella baltica DSM 15883   2 2
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Marivirga tractuosa DSM 4126   3 3
No Yes Dyadobacter fermentans DSM 18053   2 2
No Yes Spirosoma linguale DSM 74   3 3
No Yes Runella slithyformis DSM 19594   1 1
No Yes Paludibacter propionicigenes WB4   2 2
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Bacteroides sp. CF50   2 1
No Yes Prevotella ruminicola 23   1 1
No Yes Alistipes finegoldii DSM 17242   2 2
No Yes Bacteroides salanitronis DSM 18170   2 2
No Yes Bacteroides helcogenes P 36-108   2 2
No Yes Bacteroides fragilis YCH46   2 2
No Yes Pedobacter saltans DSM 12145   2 2
No Yes Solitalea canadensis DSM 3403   2 2
No Yes Pedobacter heparinus DSM 2366   1 1
No Yes Sphingobacterium sp. 21   5 5
No Yes Fluviicola taffensis DSM 16823   4 3
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Zunongwangia profunda SM-A87   4 4
No Yes Krokinobacter sp. 4H-3-7-5   3 3
No Yes Gramella forsetii KT0803   3 3
No Yes Lacinutrix sp. 5H-3-7-4   3 3
No Yes Maribacter sp. HTCC2170   1 1
No Yes Robiginitalea biformata HTCC2501   2 2
No Yes Croceibacter atlanticus HTCC2559   3 3
No Yes Aequorivita sublithincola DSM 14238   3 3
No Yes Zobellia galactanivorans   3 3
No Yes Muricauda ruestringensis DSM 13258   2 2
No Yes Cellulophaga algicola DSM 14237   3 3
No Yes Cellulophaga lytica DSM 7489   4 4
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Polaribacter sp. MED152   4 4
No Yes Capnocytophaga canimorsus Cc5   1 1
No Yes Capnocytophaga ochracea DSM 7271   1 1
No Yes Flavobacterium indicum GPTSA100-9   2 2
No Yes Flavobacterium psychrophilum JIP02/86   1 1
No Yes Flavobacterium branchiophilum FL-15   1 1
No Yes Flavobacterium columnare ATCC 49512   1 1
No Yes Flavobacterium johnsoniae UW101   3 3
No Yes Phycisphaera mikurensis NBRC 102666   2 2
No Yes Isosphaera pallida ATCC 43644   1 1
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Rhodopirellula baltica SH 1   2 2
No Yes Methylacidiphilum infernorum V4   3 3
No Yes Coraliomargarita akajimensis DSM 45221   2 2
No Yes Opitutus terrae PB90-1   1 1
No Yes Akkermansia muciniphila ATCC BAA-835   1 1
No Yes Turneriella parva DSM 21527   5 4
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550   1 1
No Yes Leptospira interrogans serovar Lai str. IPAV   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Treponema primitia ZAS-2   4 4
No Yes Treponema brennaborense DSM 12168   2 1
No Yes Treponema denticola ATCC 35405   4 2
No Yes Desulfurispirillum indicum S5   1 1
No Yes Denitrovibrio acetiphilus DSM 12809   1 1
No Yes Hydrogenobaculum sp. SN   1 1
No Yes Hydrogenobaculum sp. HO   1 1
No Yes Hydrogenobaculum sp. Y04AAS1   3 2
No Yes Candidatus Chloracidobacterium thermophilum B   3 2
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Candidatus Koribacter versatilis Ellin345   3 2
No Yes Terriglobus roseus DSM 18391   2 1
No Yes Acidobacterium capsulatum ATCC 51196   2 1
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Candidatus Saccharibacteria bacterium RAAC3_TM7_1   1 1
No Yes Candidatus Saccharimonas aalborgensis   1 1
No Yes Bacteriovorax marinus SJ   1 1
No Yes Arcobacter sp. L   1 1
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Arcobacter butzleri RM4018   1 1
No Yes Sulfurimonas denitrificans DSM 1251   1 1
No Yes Syntrophus aciditrophicus SB   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Desulfurivibrio alkaliphilus AHT2   1 1
No Yes Desulfotalea psychrophila LSv54   3 3
No Yes Desulfatibacillum alkenivorans AK-01   2 2
No Yes Desulfobacterium autotrophicum HRM2   1 1
No Yes Desulfococcus oleovorans Hxd3   1 1
No Yes Desulfovibrio piezophilus   1 1
No Yes Desulfovibrio salexigens DSM 2638   2 2
No Yes Geobacter daltonii FRC-32   2 2
No Yes Geobacter sp. M21   3 3
No Yes Geobacter uraniireducens Rf4   2 2
No Yes Geobacter bemidjiensis Bem   2 2
No Yes Pelobacter carbinolicus DSM 2380   2 2
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Dechloromonas aromatica RCB   1 1
No Yes Thauera sp. MZ1T   2 2
No Yes Azoarcus sp. KH32C   1 1
No Yes Azoarcus sp. BH72   2 2
No Yes Aromatoleum aromaticum EbN1   2 2
No Yes Dechlorosoma suillum PS   1 1
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   1 1
No Yes Methylibium petroleiphilum PM1   2 2
No Yes Thiomonas arsenitoxydans   1 1
No Yes Thiomonas intermedia K12   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Burkholderia phymatum STM815   2 2
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Alicycliphilus denitrificans K601   3 3
No Yes Ramlibacter tataouinensis TTB310   1 1
No Yes Delftia sp. Cs1-4   2 2
No Yes Delftia acidovorans SPH-1   2 2
No Yes Polaromonas sp. JS666   1 1
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Variovorax paradoxus S110   2 2
No Yes Rhodoferax ferrireducens T118   1 1
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. KKS102   1 1
No Yes Acidovorax sp. JS42   2 2
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Comamonas testosteroni CNB-2   2 2
No Yes Herminiimonas arsenicoxydans   1 1
No Yes Collimonas fungivorans Ter331   1 1
No Yes Janthinobacterium sp. Marseille   1 1
No Yes Thiobacillus denitrificans ATCC 25259   2 2
No Yes Nitrosomonas sp. Is79A3   1 1
No Yes Nitrosomonas eutropha C91   1 1
No Yes Nitrosomonas europaea ATCC 19718   1 1
No Yes Sideroxydans lithotrophicus ES-1   2 2
No Yes Methylotenera versatilis 301   2 2
No Yes Methylotenera mobilis JLW8   2 2
No Yes Methylovorus sp. MP688   2 2
No Yes Methylovorus glucosetrophus SIP3-4   2 2
No Yes Methylobacillus flagellatus KT   2 2
No Yes Magnetococcus marinus MC-1   1 1
No Yes Parvularcula bermudensis HTCC2503   2 2
No Yes Asticcacaulis excentricus CB 48   5 4
No Yes Brevundimonas subvibrioides ATCC 15264   6 4
No Yes Caulobacter sp. K31   6 4
No Yes Caulobacter crescentus NA1000   2 2
No Yes Caulobacter segnis ATCC 21756   4 3
No Yes Phenylobacterium zucineum HLK1   5 3
No Yes Erythrobacter litoralis HTCC2594   4 3
No Yes Sphingopyxis alaskensis RB2256   4 3
No Yes Novosphingobium sp. PP1Y   4 3
No Yes Novosphingobium aromaticivorans DSM 12444   2 1
No Yes Sphingobium sp. SYK-6   5 4
No Yes Sphingobium japonicum UT26S   4 3
No Yes Sphingobium chlorophenolicum L-1   3 2
No Yes Sphingomonas sp. MM-1   5 4
No Yes Sphingomonas wittichii RW1   2 1
No Yes Maricaulis maris MCS10   4 3
No Yes Hirschia baltica ATCC 49814   4 3
No Yes Hyphomonas neptunium ATCC 15444   3 3
No Yes Dinoroseobacter shibae DFL 12   2 2
No Yes Phaeobacter gallaeciensis 2.10   2 2
No Yes Pseudovibrio sp. FO-BEG1   2 2
No Yes Jannaschia sp. CCS1   1 1
No Yes Ruegeria sp. TM1040   2 2
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Roseobacter litoralis Och 149   2 2
No Yes Roseobacter denitrificans OCh 114   2 2
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Gluconacetobacter xylinus NBRC 3288   3 2
No Yes Granulibacter bethesdensis CGDNIH1   4 3
No Yes Gluconacetobacter diazotrophicus PAl 5   2 1
No Yes Gluconobacter oxydans 621H   5 3
No Yes Acetobacter pasteurianus IFO 3283-01   2 1
No Yes Polymorphum gilvum SL003B-26A1   2 2
No Yes Neorickettsia sennetsu str. Miyayama   1 1
No Yes Neorickettsia risticii str. Illinois   1 1
No Yes Wolbachia endosymbiont of Culex quinquefasciatus Pel   1 1
No Yes Ehrlichia chaffeensis str. Arkansas   1 1
No Yes Ehrlichia canis str. Jake   1 1
No Yes Ehrlichia ruminantium str. Gardel   1 1
No Yes Anaplasma phagocytophilum HZ   1 1
No Yes Anaplasma marginale str. Florida   1 1
No Yes Anaplasma centrale str. Israel   1 1
No Yes Rickettsia bellii OSU 85-389   1 1
No Yes Rickettsia canadensis str. McKiel   1 1
No Yes Rickettsia typhi str. Wilmington   1 1
No Yes Rickettsia prowazekii str. BuV67-CWPP   1 1
No Yes Rickettsia philipii str. 364D   1 1
No Yes Rickettsia heilongjiangensis 054   1 1
No Yes Rickettsia peacockii str. Rustic   1 1
No Yes Rickettsia felis URRWXCal2   1 1
No Yes Rickettsia slovaca 13-B   1 1
No Yes Rickettsia parkeri str. Portsmouth   1 1
No Yes Rickettsia massiliae MTU5   1 1
No Yes Rickettsia japonica YH   1 1
No Yes Rickettsia africae ESF-5   1 1
No Yes Rickettsia rhipicephali str. 3-7-female6-CWPP   1 1
No Yes Rickettsia montanensis str. OSU 85-930   1 1
No Yes Candidatus Rickettsia amblyommii str. GAT-30V   1 1
No Yes Rickettsia australis str. Cutlack   1 1
No Yes Rickettsia akari str. Hartford   1 1
No Yes Rickettsia rickettsii str. 'Sheila Smith'   1 1
No Yes Rickettsia conorii str. Malish 7   1 1
No Yes Starkeya novella DSM 506   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Azorhizobium caulinodans ORS 571   3 3
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Methylobacterium extorquens AM1   1 1
No Yes Methylobacterium sp. 4-46   2 2
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium nodulans ORS 2060   3 3
No Yes Methylobacterium radiotolerans JCM 2831   2 2
No Yes Parvibaculum lavamentivorans DS-1   1 1
No Yes Ochrobactrum anthropi ATCC 49188   2 2
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Brucella ovis ATCC 25840   1 1
No Yes Brucella abortus S19   1 1
No Yes Sinorhizobium fredii NGR234   2 2
No Yes Sinorhizobium medicae WSM419   2 2
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   2 2
No Yes Rhizobium etli CIAT 652   2 2
No Yes Rhizobium leguminosarum bv. viciae 3841   2 2
No Yes Agrobacterium tumefaciens str. C58   2 2
No Yes Agrobacterium radiobacter K84   2 2
No Yes Agrobacterium sp. H13-3   2 2
No Yes Agrobacterium vitis S4   3 3
No Yes Mesorhizobium sp. BNC1   1 1
No Yes Mesorhizobium opportunistum WSM2075   2 2
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   2 2
No Yes Mesorhizobium loti MAFF303099   2 2
No Yes Methylocella silvestris BL2   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   3 3
No Yes Hyphomicrobium sp. MC1   2 2
No Yes Hyphomicrobium denitrificans ATCC 51888   2 2
No Yes Oligotropha carboxidovorans OM4   2 2
No Yes Rhodopseudomonas palustris BisA53   2 2
No Yes Nitrobacter winogradskyi Nb-255   2 2
No Yes Nitrobacter hamburgensis X14   2 2
No Yes Bradyrhizobium japonicum USDA 110   2 2
No Yes Bradyrhizobium sp. ORS 278   2 2
No Yes Methylocystis sp. SC2   2 1
No Yes Saccharophagus degradans 2-40   6 6
No Yes Teredinibacter turnerae T7901   5 5
No Yes Cellvibrio japonicus Ueda107   7 7
No Yes Oceanimonas sp. GK1   3 3
No Yes Tolumonas auensis DSM 9187   2 2
No Yes Aeromonas veronii B565   4 4
No Yes Aeromonas salmonicida subsp. salmonicida A449   4 4
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   3 3
No Yes Aliivibrio salmonicida LFI1238   5 5
No Yes Vibrio fischeri MJ11   5 5
No Yes Vibrio sp. Ex25   7 4
No Yes Vibrio harveyi ATCC BAA-1116   7 4
No Yes Vibrio parahaemolyticus RIMD 2210633   7 4
No Yes Vibrio splendidus LGP32   7 4
No Yes Vibrio anguillarum 775   3 3
No Yes Vibrio furnissii NCTC 11218   3 3
No Yes Vibrio vulnificus MO6-24/O   3 3
No Yes Vibrio cholerae O395   3 3
No Yes Photobacterium profundum SS9   7 4
No Yes Psychromonas ingrahamii 37   1 1
No Yes Psychromonas sp. CNPT3   1 1
No Yes Idiomarina loihiensis L2TR   2 2
No Yes Ferrimonas balearica DSM 9799   4 4
No Yes Shewanella piezotolerans WP3   3 2
No Yes Shewanella loihica PV-4   5 4
No Yes Shewanella halifaxensis HAW-EB4   4 3
No Yes Shewanella sediminis HAW-EB3   5 4
No Yes Shewanella denitrificans OS217   7 5
No Yes Shewanella pealeana ATCC 700345   4 3
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella woodyi ATCC 51908   4 3
No Yes Shewanella sp. MR-4   3 2
No Yes Shewanella amazonensis SB2B   4 3
No Yes Shewanella violacea DSS12   3 2
No Yes Shewanella frigidimarina NCIMB 400   4 3
No Yes Colwellia psychrerythraea 34H   2 2
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Pseudoalteromonas atlantica T6c   3 3
No Yes Pseudoalteromonas haloplanktis TAC125   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   3 3
No Yes Glaciecola nitratireducens FR1064   2 2
No Yes Marinobacter adhaerens HP15   3 3
No Yes Marinobacter sp. BSs20148   3 3
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   3 3
No Yes Marinobacter aquaeolei VT8   4 4
No Yes Alteromonas sp. SN2   4 4
No Yes Alteromonas macleodii str. 'Deep ecotype'   4 4
No Yes Kangiella koreensis DSM 16069   2 2
No Yes Hahella chejuensis KCTC 2396   3 3
No Yes Alcanivorax borkumensis SK2   3 3
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Marinomonas sp. MWYL1   2 2
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Chromohalobacter salexigens DSM 3043   2 2
No Yes Halomonas elongata DSM 2581   5 5
No Yes Methylomicrobium alcaliphilum   5 5
No Yes Methylomonas methanica MC09   2 2
No Yes Methylococcus capsulatus str. Bath   2 2
No Yes Dichelobacter nodosus VCS1703A   1 1
No Yes Rhodanobacter denitrificans   1 1
No Yes Frateuria aurantia DSM 6220   2 2
No Yes Stenotrophomonas maltophilia K279a   1 1
No Yes Alkalilimnicola ehrlichii MLHE-1   2 2
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   3 3
No Yes Thioalkalivibrio sp. K90mix   2 2
No Yes Halorhodospira halophila SL1   2 2
No Yes Allochromatium vinosum DSM 180   4 4
No Yes Thiocystis violascens DSM 198   5 5
No Yes Nitrosococcus watsonii C-113   4 4
No Yes Nitrosococcus halophilus Nc4   5 5
No Yes Nitrosococcus oceani ATCC 19707   4 4
No Yes Coxiella burnetii Dugway 5J108-111   2 2
No Yes Legionella longbeachae NSW150   1 1
No Yes Legionella pneumophila str. Corby   2 2
No Yes gamma proteobacterium HdN1   2 2
No Yes Photorhabdus asymbiotica   3 3
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Xenorhabdus nematophila ATCC 19061   1 1
No Yes Rahnella sp. Y9602   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Dickeya zeae Ech1591   1 1
No Yes Azotobacter vinelandii DJ   3 3
No Yes Pseudomonas sp. TKP   3 3
No Yes Pseudomonas sp. UW4   5 5
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   4 4
No Yes Pseudomonas entomophila L48   4 4
No Yes Pseudomonas syringae pv. tomato str. DC3000   4 4
No Yes Pseudomonas stutzeri A1501   6 6
No Yes Pseudomonas fulva 12-X   5 5
No Yes Pseudomonas putida F1   4 4
No Yes Pseudomonas protegens Pf-5   4 4
No Yes Pseudomonas fluorescens SBW25   3 3
No Yes Pseudomonas mendocina ymp   5 5
No Yes Pseudomonas aeruginosa UCBPP-PA14   6 6
No Yes Pseudomonas sp. VLB120   4 4
No Yes Methylophaga sp. JAM1   4 4
No Yes Cycloclasticus sp. P1   3 3
No Yes Thiomicrospira crunogena XCL-2   2 2
No Yes Thioalkalimicrobium cyclicum ALM1   1 1
No Yes Francisella sp. TX077308   2 1
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   2 1
No Yes Francisella tularensis subsp. tularensis WY96-3418   1 1
No Yes Francisella cf. novicida 3523   1 1
No Yes Francisella novicida U112   1 1
No Yes Candidatus Caldiarchaeum subterraneum   1 1
No Yes Ignisphaera aggregans DSM 17230   6 6
No Yes Desulfurococcus fermentans DSM 16532   1 1
No Yes Acidianus hospitalis W1   3 3
No Yes Sulfolobus tokodaii str. 7   1 1
No Yes Sulfolobus islandicus Y.N.15.51   1 1
No Yes Thermofilum sp. 1910b   2 2
No Yes Thermofilum pendens Hrk 5   3 3
No Yes Vulcanisaeta moutnovskia 768-28   4 4
No Yes Vulcanisaeta distributa DSM 14429   9 9
No Yes Caldivirga maquilingensis IC-167   3 3
No Yes Pyrobaculum sp. 1860   5 5
No Yes Pyrobaculum calidifontis JCM 11548   3 3
No Yes Pyrobaculum arsenaticum DSM 13514   3 3
No Yes Pyrobaculum oguniense TE7   4 4
No Yes Pyrobaculum aerophilum str. IM2   3 3
No Yes Pyrobaculum islandicum DSM 4184   1 1
No Yes Thermoproteus uzoniensis 768-20   4 4
No Yes halophilic archaeon DL31   1 1
No Yes Methanococcoides burtonii DSM 6242   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanohalophilus mahii DSM 5219   1 1
No Yes Methanopyrus kandleri AV19   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   2 2
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Haloterrigena turkmenica DSM 5511   1 1
No Yes Natrinema sp. J7-2   1 1
No Yes Natrialba magadii ATCC 43099   1 1
No Yes Halorubrum lacusprofundi ATCC 49239   2 2
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Haloferax volcanii DS2   1 1
No Yes Halomicrobium mukohataei DSM 12286   2 2
No Yes Natronomonas pharaonis DSM 2160   1 1
No Yes Haloarcula hispanica ATCC 33960   1 1
No Yes Haloarcula marismortui ATCC 43049   1 1
No Yes Halalkalicoccus jeotgali B3   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 71 71
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 14 14
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 4 4
No Yes Ascaris suum Victoria/Ghent Pig roundworm 12 12
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 27 26
No Yes Cryptococcus neoformans var. grubii H99   11 11
No Yes Cryptococcus neoformans B-3501A   18 18
No Yes Cryptococcus neoformans JEC21   9 9
No Yes Paracoccidioides brasiliensis Pb01   6 6
No Yes Paracoccidioides brasiliensis Pb03   5 5
No Yes Coccidioides posadasii str. Silveira   12 12
No Yes Coccidioides immitis RMSCC 3703   7 7
No Yes Coccidioides immitis RMSCC 2394   7 7
No Yes Coccidioides immitis H538.4   7 7
No Yes Ajellomyces dermatitidis ER-3   7 7
No Yes Histoplasma capsulatum H143   6 6
No Yes Histoplasma capsulatum H88   6 6
No Yes Histoplasma capsulatum G186AR   6 6
No Yes Aspergillus fumigatus A1163   9 9
No Yes Candida albicans WO-1   16 16
No Yes Saccharomyces cerevisiae UC5   7 7
No Yes Saccharomyces cerevisiae PW5   10 10
No Yes Saccharomyces cerevisiae FL100   7 7
No Yes Saccharomyces cerevisiae CLIB382   1 1
No Yes Saccharomyces cerevisiae CLIB324   5 5
No Yes Saccharomyces cerevisiae CBS7960   8 8
No Yes Saccharomyces cerevisiae YJM269   6 6
No Yes Saccharomyces cerevisiae T7   9 9
No Yes Saccharomyces cerevisiae FostersB   9 9
No Yes Saccharomyces cerevisiae FostersO   7 7
No Yes Saccharomyces cerevisiae VL3   8 8
No Yes Saccharomyces cerevisiae Vin13   9 9
No Yes Saccharomyces cerevisiae LalvinQA23   9 9
No Yes Saccharomyces cerevisiae AWRI796   9 9
No Yes Saccharomyces cerevisiae Sigma1278b   10 10
No Yes Saccharomyces cerevisiae W303   11 11
No Yes Saccharomyces cerevisiae JAY291   9 9
No Yes Saccharomyces cerevisiae AWRI1631   6 6
No Yes Saccharomyces cerevisiae YPS163   4 4
No Yes Saccharomyces cerevisiae M22   3 3
No Yes Saccharomyces cerevisiae T73   2 2
No Yes Saccharomyces cerevisiae CLIB215   7 7
No Yes Saccharomyces cerevisiae Y10   3 3
No Yes Saccharomyces cerevisiae YJM789   9 9
No Yes Saccharomyces cerevisiae YJM789   8 8
No Yes Saccharomyces cerevisiae RM11-1a   9 9
No Yes Saccharomyces cerevisiae RM11-1a   10 10
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 13 13
No Yes Schizosaccharomyces pombe 972h-   13 13
No Yes Batrachochytrium dendrobatidis JEL423   112 112
No Yes Batrachochytrium dendrobatidis JAM81   108 108
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 347 346
No Yes Hordeum vulgare 22 Domesticated barley 157 156
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 331 326
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Neospora caninum Nc-Liverpool 6.2   8 8
No Yes Plasmodium falciparum HB3   12 12
No Yes Plasmodium falciparum Dd2   8 8
No Yes Chroococcidiopsis thermalis PCC 7203   1 1
No Yes Chamaesiphon minutus PCC 6605   3 3
No Yes Cyanobium gracile PCC 6307   1 1
No Yes Dactylococcopsis salina PCC 8305   2 2
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Synechococcus sp. RCC307   2 1
No Yes Synechococcus sp. WH 8102   1 1
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Crinalium epipsammum PCC 9333   3 3
No Yes Oscillatoria nigro-viridis PCC 7112   6 6
No Yes Oscillatoria acuminata PCC 6304   4 4
No Yes Arthrospira platensis NIES-39   4 3
No Yes Cyanothece sp. PCC 7822   6 5
No Yes Cyanothece sp. PCC 7425   2 2
No Yes Cyanothece sp. PCC 7424   7 6
No Yes Cyanothece sp. ATCC 51142   3 3
No Yes Cyanothece sp. PCC 8801   4 4
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   9 6
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   2 2
No Yes Stanieria cyanosphaera PCC 7437   2 2
No Yes Calothrix parietina Calothrix sp. PCC 6303   5 4
No Yes Cylindrospermum stagnale PCC 7417   4 4
No Yes Anabaena cylindrica PCC 7122   3 3
No Yes Mycobacterium sp. JDM601   1 1
No Yes Mycobacterium canettii CIPT 140060008   1 1
No Yes Mycobacterium tuberculosis CCDC5180   1 1
No Yes Leifsonia xyli subsp. cynodontis DSM 46306   1 1
No Yes Chthonomonas calidirosea T49   2 2
No Yes Desulfotomaculum gibsoniae DSM 7213   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Clostridium pasteurianum BC1   1 1
No Yes Clostridium botulinum E3 str. Alaska E43   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1   1 1
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Geobacillus sp. C56-T3   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Alistipes shahii WAL 8301   1 1
No Yes Bacteroides fragilis 638R   3 3
No Yes Bacteroides fragilis NCTC 9343   2 2
No Yes Nonlabens dokdonensis DSW-6   3 3
No Yes Psychroflexus torquis ATCC 700755   2 2
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197   1 1
No Yes Leptospira interrogans serovar Lai str. 56601   1 1
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Treponema pedis str. T A4   4 3
No Yes Arcobacter butzleri 7h1h   1 1
No Yes Arcobacter butzleri ED-1   1 1
No Yes Desulfobacula toluolica Tol2   2 2
No Yes Desulfovibrio desulfuricans ND132   1 1
No Yes Geobacter sp. M18   2 2
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Burkholderia sp. YI23   3 2
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Alicycliphilus denitrificans BC   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Nitrosomonas sp. AL212   3 3
No Yes Sulfuricella denitrificans skB26   2 2
No Yes Caulobacter crescentus CB15   2 2
No Yes Zymomonas mobilis subsp. mobilis CP4   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Leisingera methylohalidivorans DSM 14336   2 2
No Yes Octadecabacter antarcticus 307   3 3
No Yes Octadecabacter arcticus 238   3 3
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Paracoccus aminophilus JCM 7686   2 2
No Yes Gluconacetobacter diazotrophicus PAl 5   2 1
No Yes Gluconobacter oxydans H24   6 3
No Yes Acetobacter pasteurianus 386B   2 1
No Yes Acetobacter pasteurianus IFO 3283-12   2 1
No Yes Acetobacter pasteurianus IFO 3283-01-42C   2 1
No Yes Acetobacter pasteurianus IFO 3283-32   2 1
No Yes Acetobacter pasteurianus IFO 3283-26   2 1
No Yes Acetobacter pasteurianus IFO 3283-22   2 1
No Yes Acetobacter pasteurianus IFO 3283-07   2 1
No Yes Acetobacter pasteurianus IFO 3283-03   2 1
No Yes Wolbachia endosymbiont of Drosophila melanogaster   1 1
No Yes Wolbachia endosymbiont strain TRS of Brugia malayi   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wHa   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wNo   1 1
No Yes Ehrlichia muris AS145   1 1
No Yes Ehrlichia ruminantium str. Welgevonden   1 1
No Yes Ehrlichia ruminantium str. Welgevonden   1 1
No Yes Anaplasma phagocytophilum str. Dog2   1 1
No Yes Anaplasma phagocytophilum str. HZ2   1 1
No Yes Anaplasma phagocytophilum str. JM   1 1
No Yes Anaplasma marginale str. Gypsy Plains   1 1
No Yes Anaplasma marginale str. St. Maries   1 1
No Yes Rickettsia bellii RML369-C   1 1
No Yes Rickettsia canadensis str. CA410   1 1
No Yes Rickettsia typhi str. B9991CWPP   1 1
No Yes Rickettsia typhi str. TH1527   1 1
No Yes Rickettsia prowazekii str. Breinl   1 1
No Yes Rickettsia prowazekii str. NMRC Madrid E   1 1
No Yes Rickettsia prowazekii str. RpGvF24   1 1
No Yes Rickettsia prowazekii str. GvV257   1 1
No Yes Rickettsia prowazekii str. Dachau   1 1
No Yes Rickettsia prowazekii str. Katsinyian   1 1
No Yes Rickettsia prowazekii str. Chernikova   1 1
No Yes Rickettsia prowazekii Rp22   1 1
No Yes Rickettsia prowazekii str. Madrid E   1 1
No Yes Rickettsia slovaca str. D-CWPP   1 1
No Yes Rickettsia massiliae str. AZT80   1 1
No Yes Rickettsia rickettsii str. Arizona   1 1
No Yes Rickettsia rickettsii str. Brazil   1 1
No Yes Rickettsia rickettsii str. Hauke   1 1
No Yes Rickettsia rickettsii str. Colombia   1 1
No Yes Rickettsia rickettsii str. Hlp#2   1 1
No Yes Rickettsia rickettsii str. Hino   1 1
No Yes Rickettsia rickettsii str. Iowa   1 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens PA1   1 1
No Yes Brucella ceti TE10759-12   1 1
No Yes Brucella ceti TE28753-12   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis NI   1 1
No Yes Brucella melitensis M5-90   1 1
No Yes Brucella melitensis M28   1 1
No Yes Brucella melitensis bv. 1 str. 16M   1 1
No Yes Brucella abortus A13334   1 1
No Yes Brucella melitensis biovar Abortus 2308   1 1
No Yes Brucella abortus bv. 1 str. 9-941   1 1
No Yes Sinorhizobium fredii USDA 257   2 2
No Yes Sinorhizobium fredii HH103   2 2
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Rhizobium etli CFN 42   2 2
No Yes Rhizobium etli bv. mimosae str. Mim1   2 2
No Yes Rhizobium tropici CIAT 899   3 3
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   2 2
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   2 2
No Yes Mesorhizobium australicum WSM2073   2 2
No Yes Hyphomicrobium nitrativorans NL23   3 3
No Yes Hyphomicrobium denitrificans 1NES1   2 2
No Yes Oligotropha carboxidovorans OM5   2 2
No Yes Oligotropha carboxidovorans OM5   2 2
No Yes Rhodopseudomonas palustris DX-1   2 2
No Yes Rhodopseudomonas palustris TIE-1   2 2
No Yes Rhodopseudomonas palustris HaA2   2 2
No Yes Rhodopseudomonas palustris BisB5   2 2
No Yes Rhodopseudomonas palustris BisB18   2 2
No Yes Rhodopseudomonas palustris CGA009   2 2
No Yes Bradyrhizobium sp. S23321   2 2
No Yes Bradyrhizobium sp. BTAi1   2 2
No Yes Bradyrhizobium oligotrophicum S58   3 3
No Yes Bradyrhizobium japonicum USDA 6   2 2
No Yes Simiduia agarivorans SA1 = DSM 21679   4 4
No Yes Aeromonas hydrophila ML09-119   3 3
No Yes Vibrio fischeri ES114   4 4
No Yes Vibrio sp. EJY3   7 4
No Yes Vibrio parahaemolyticus BB22OP   7 4
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   7 4
No Yes Vibrio anguillarum Listonella anguillarum M3   3 3
No Yes Vibrio nigripulchritudo VibrioScope   5 5
No Yes Vibrio vulnificus CMCP6   3 3
No Yes Vibrio vulnificus YJ016   3 3
No Yes Vibrio cholerae LMA3984-4   3 3
No Yes Vibrio cholerae M66-2   3 3
No Yes Vibrio cholerae O395   3 3
No Yes Vibrio cholerae IEC224   3 3
No Yes Vibrio cholerae O1 str. 2010EL-1786   3 3
No Yes Vibrio cholerae MJ-1236   3 3
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   3 3
No Yes Idiomarina loihiensis GSL 199   2 2
No Yes Shewanella sp. ANA-3   3 2
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS223   1 1
No Yes Shewanella baltica OS195   1 1
No Yes Shewanella baltica OS155   1 1
No Yes Shewanella sp. MR-7   3 2
No Yes Glaciecola psychrophila 170   3 3
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   4 4
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   4 4
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   4 4
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   4 4
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   4 4
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   4 4
No Yes Alteromonas macleodii str. 'English Channel 615'   4 4
No Yes Alteromonas macleodii AltDE1   4 4
No Yes Alteromonas macleodii str. 'English Channel 673'   7 6
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   7 6
No Yes Alteromonas macleodii str. 'Black Sea 11'   6 6
No Yes Alteromonas macleodii ATCC 27126   7 6
No Yes Alcanivorax dieselolei B5   3 3
No Yes Thalassolituus oleivorans MIL-1   2 2
No Yes Stenotrophomonas maltophilia D457   1 1
No Yes Stenotrophomonas maltophilia JV3   2 2
No Yes Stenotrophomonas maltophilia R551-3   2 2
No Yes Thioalkalivibrio nitratireducens DSM 14787   3 3
No Yes Thioflavicoccus mobilis 8321   4 4
No Yes Coxiella burnetii CbuK_Q154   1 1
No Yes Coxiella burnetii CbuG_Q212   1 1
No Yes Coxiella burnetii RSA 493   1 1
No Yes Legionella pneumophila str. Paris   2 2
No Yes Legionella pneumophila str. Lens   2 2
No Yes Legionella pneumophila subsp. pneumophila LPE509   2 2
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   2 2
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   2 2
No Yes Legionella pneumophila subsp. pneumophila   2 2
No Yes Legionella pneumophila subsp. pneumophila   2 2
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   2 2
No Yes Legionella pneumophila 2300/99 Alcoy   2 2
No Yes Rahnella aquatilis HX2   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Azotobacter vinelandii CA6   3 3
No Yes Azotobacter vinelandii CA   3 3
No Yes Pseudomonas denitrificans ATCC 13867   7 7
No Yes Pseudomonas syringae pv. phaseolicola 1448A   4 4
No Yes Pseudomonas syringae pv. syringae B728a   4 4
No Yes Pseudomonas stutzeri CCUG 29243   6 6
No Yes Pseudomonas stutzeri DSM 10701   6 6
No Yes Pseudomonas stutzeri DSM 4166   6 6
No Yes Pseudomonas stutzeri RCH2   6 6
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   6 6
No Yes Pseudomonas monteilii SB3101   4 4
No Yes Pseudomonas monteilii SB3078   4 4
No Yes Pseudomonas putida H8234   5 5
No Yes Pseudomonas putida HB3267   4 4
No Yes Pseudomonas putida NBRC 14164   4 4
No Yes Pseudomonas putida DOT-T1E   4 4
No Yes Pseudomonas putida S16   4 4
No Yes Pseudomonas putida BIRD-1   4 4
No Yes Pseudomonas putida W619   4 4
No Yes Pseudomonas putida ND6   4 4
No Yes Pseudomonas putida KT2440   5 5
No Yes Pseudomonas putida GB-1   4 4
No Yes Pseudomonas protegens CHA0   4 4
No Yes Pseudomonas poae RE*1-1-14   3 3
No Yes Pseudomonas fluorescens F113   4 4
No Yes Pseudomonas fluorescens A506   3 3
No Yes Pseudomonas fluorescens R124   4 4
No Yes Pseudomonas fluorescens Pf0-1   4 4
No Yes Pseudomonas resinovorans NBRC 106553   5 5
No Yes Pseudomonas mendocina NK-01   6 6
No Yes Pseudomonas aeruginosa SCV20265   6 6
No Yes Pseudomonas aeruginosa MTB-1   6 6
No Yes Pseudomonas aeruginosa LES431   6 6
No Yes Pseudomonas aeruginosa RP73   6 6
No Yes Pseudomonas aeruginosa B136-33   6 6
No Yes Pseudomonas aeruginosa PA1R   7 7
No Yes Pseudomonas aeruginosa PA1   7 7
No Yes Pseudomonas aeruginosa DK2   6 6
No Yes Pseudomonas aeruginosa NCGM2.S1   6 6
No Yes Pseudomonas aeruginosa M18   6 6
No Yes Pseudomonas aeruginosa LESB58   6 6
No Yes Pseudomonas aeruginosa PA7   6 6
No Yes Pseudomonas aeruginosa PAO1   6 6
No Yes Methylophaga sp. JAM7   5 5
No Yes Cycloclasticus zancles 7-ME   3 3
No Yes Francisella tularensis subsp. mediasiatica FSC147   1 1
No Yes Francisella cf. novicida Fx1   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   3 3
No Yes Aeropyrum camini SY1 = JCM 12091   1 1
No Yes Sulfolobus islandicus LAL14/1   2 2
No Yes Sulfolobus islandicus REY15A   1 1
No Yes Sulfolobus islandicus HVE10/4   2 2
No Yes Sulfolobus islandicus Y.G.57.14   2 2
No Yes Sulfolobus islandicus L.S.2.15   1 1
No Yes Sulfolobus islandicus M.16.27   2 2
No Yes Sulfolobus islandicus M.14.25   1 1
No Yes Sulfolobus islandicus M.16.4   1 1
No Yes Sulfolobus islandicus L.D.8.5   2 2
No Yes Sulfolobus solfataricus 98/2   1 1
No Yes Ferroplasma acidarmanus fer1   1 1
No Yes Halovivax ruber XH-70   1 1
No Yes Natrinema pellirubrum DSM 15624   1 1
No Yes Natronococcus occultus SP4   1 1
No Yes Natronomonas moolapensis 8.8.11   1 1
No Yes Haloarcula hispanica N601   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 52 52
No Yes Homo sapiens (NCBI version) Human 28 28
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 17 17
No Yes Loa loa v3.3 (Request) Eye worm 7 7
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 10 10
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 5 5
No Yes Moniliophthora perniciosa FA553 (Genome survey)   29 29
No Yes Picea sitchensis (Incomplete) Sitka spruce 6 6
No Yes Lotus japonicus (Early assembly)   107 107
No Yes Malus x domestica (Duplicate) Apple 98 95
No Yes Ricinus communis (Early assembly) Castor bean 77 75
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   163 157
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 107 105
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 106 104
No Yes Phoenix dactylifera (Early draft) Date palm 40 39
No Yes Wolbachia endosymbiont of Brugia malayi v1.0 (Broad Institute)   1 1
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   7 4
No Yes Homo sapiens 69_37 Human 20 20
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 15 15
No Yes Gorilla gorilla 69_3.1 Western gorilla 16 16
No Yes Pongo abelii 69_2 Sumatran orangutan 14 14
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 15 15
No Yes Macaca mulatta 69_1 Rhesus monkey 22 22
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 13 13
No Yes Otolemur garnettii 69_3 Small-eared galago 27 27
No Yes Microcebus murinus 69_1 Gray mouse lemur 12 11
No Yes Rattus norvegicus 69_3.4 Norway rat 13 13
No Yes Mus musculus 69_38 House mouse 17 17
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 9 9
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 19 19
No Yes Cavia porcellus 69_3 Domestic guinea pig 12 12
No Yes Oryctolagus cuniculus 69_2 Rabbit 28 27
No Yes Ochotona princeps 69 American pika 29 25
No Yes Tupaia belangeri 69 Northern tree shrew 16 11
No Yes Sus scrofa 69_10.2 Pig 28 28
No Yes Bos taurus 69_3.1 Cattle 66 66
No Yes Vicugna pacos 69_1 Alpaca 10 9
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 12 11
No Yes Mustela putorius furo 69_1.0 Domestic ferret 18 18
No Yes Ailuropoda melanoleuca 69_1 Giant panda 16 16
No Yes Canis familiaris 69_3.1 Dog 21 21
No Yes Felis catus 69 Domestic cat 14 13
No Yes Equus caballus 69_2 Horse 23 23
No Yes Myotis lucifugus 69_2.0 Little brown bat 18 18
No Yes Pteropus vampyrus 69_1 Large flying fox 13 12
No Yes Sorex araneus 69_1 European shrew 10 8
No Yes Erinaceus europaeus 69 Western European hedgehog 15 14
No Yes Procavia capensis 69_1 Cape rock hyrax 13 11
No Yes Loxodonta africana 69_3 African savanna elephant 17 17
No Yes Echinops telfairi 69 Small Madagascar hedgehog 13 12
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 11 10
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 7 5
No Yes Macropus eugenii 69_1.0 Tammar wallaby 13 13
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 38 38
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 92 92
No Yes Ornithorhynchus anatinus 69_5 Platypus 11 10
No Yes Petromyzon marinus 69_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 69_2 Turkey 12 12
No Yes Gallus gallus 69_2 Chicken 19 19
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 15 15
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 29 28
No Yes Anolis carolinensis 69_2.0 Green anole 14 14
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 28 28
No Yes Latimeria chalumnae 69_1 Coelacanth 57 57
No Yes Gadus morhua 69_1 Atlantic cod 11 11
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 8 8
No Yes Takifugu rubripes 69_4 Torafugu 11 11
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 11 11
No Yes Oryzias latipes 69_1 Japanese medaka 15 15
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 8 8
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 14 14
No Yes Danio rerio 69_9 Zebrafish 11 11
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 69 Vase tunicate 4 4
No Yes Drosophila melanogaster 69_5 Fruit fly 14 14
No Yes Caenorhabditis elegans 69_215 Roundworm 25 24
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 12 12
No Yes Arabidopsis thaliana 10 Thale cress 72 71
No Yes 1_050719N (meta-genome)   9 9
No Yes 2_050719S (meta-genome)   46 46
No Yes 3_050719R (meta-genome)   5 5
No Yes 4_050719Q (meta-genome)   18 17
No Yes 4_Deep_abyss (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   7 7
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   20 18
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   21 18
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   40 40
No Yes Bath Hot Springs, filamentous community (meta-genome)   4 4
No Yes Bath Hot Springs, planktonic community (meta-genome)   18 18
No Yes Combined (meta-genome)   27 27
No Yes Crater Hills (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   15 15
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   11 11
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   12 12
No Yes Dump bottom (Dump bottom) (meta-genome)   71 71
No Yes Dump top (Dump top) (meta-genome)   50 49
No Yes Endophytic microbiome from Rice (meta-genome)   165 165
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   15 15
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   11 11
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   16 13
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   4 4
No Yes Fungus garden combined (combined) (meta-genome)   6 6
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   12 12
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   14 14
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   8 8
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   38 38
No Yes Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   18 18
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   43 43
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   14 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   36 36
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   27 27
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   10 10
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   35 35
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   11 11
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   6 6
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   8 8
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   10 10
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   54 54
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   8 8
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   14 14
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   12 12
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   17 17
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   15 15
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   10 10
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   11 11
No Yes Mouse Gut Community lean2 (meta-genome)   3 3
No Yes NCBI 2017_08 genome   83051 78216
No Yes Nymph Lake Bulk Water (meta-genome)   2 2
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   48 47
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   5 5
No Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma1 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   3 3
No Yes Protozoadb 2010_08 (Protozoadb)   230 227
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   25 23
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   17 17
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   18 18
No Yes Single-cell genome from subgingival tooth surface TM7a (meta-genome)   3 3
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   3 3
No Yes Sludge/US, Jazz Assembly (meta-genome)   2 2
No Yes Sludge/US, Phrap Assembly (meta-genome)   4 4
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   32 28
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   45 45
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   45 45
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   13 13
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   31 31
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   33 33
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   40 40
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   4 3
No Yes STRING v9.0.5 (STRING)   5522 5409
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   3 3
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   57 57
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   7 7
No Yes Uniprot 2018_03 genome   338847 336430
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   4 3
No Yes Global Ocean Sampling Expedition (GOS)   713 711
No Yes NCBI plasmid sequences (Plasmids)   24 23
No Yes NCBI viral sequences (Viral)   82 82
No Yes PDB chains (SCOP 1.75) (PDB)   136 133
No Yes Protein Data Bank (all PDB sequenc)   3202 3177
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   10484 10459
No Yes TargetDB (Targets)   119 119
No Yes UniProt viral sequences (Viral)   95120 95115

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